Wall clock time and date at job start Tue Mar 31 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48498 * 109.47312 * 274.98929 * 3 2 1 5 5 H 1.48507 * 109.46941 * 34.98495 * 3 2 1 6 6 H 1.48502 * 109.47557 * 154.98319 * 3 2 1 7 7 C 1.38819 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 186.83346 * 7 2 1 9 9 N 1.36935 * 119.99636 * 6.82279 * 7 2 1 10 10 C 1.47024 * 125.65064 * 353.94932 * 9 7 2 11 11 C 1.54325 * 107.26660 * 181.02021 * 10 9 7 12 12 H 1.09004 * 110.87068 * 263.75552 * 11 10 9 13 13 O 1.42902 * 110.71646 * 140.55873 * 11 10 9 14 14 C 1.55151 * 102.94677 * 22.19261 * 11 10 9 15 15 H 1.09009 * 110.99911 * 82.60678 * 14 11 10 16 16 C 1.52995 * 111.00717 * 206.42093 * 14 11 10 17 17 N 1.46494 * 109.47302 * 185.00294 * 16 14 11 18 18 C 1.34779 * 120.00159 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99821 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00038 * 179.97438 * 18 17 16 21 21 C 1.54628 * 111.03776 * 295.33285 * 20 18 17 22 22 C 1.51168 * 104.69325 * 217.36186 * 21 20 18 23 23 C 1.30522 * 111.11983 * 16.38264 * 22 21 20 24 24 C 1.51094 * 111.10758 * 0.03481 * 23 22 21 25 25 C 1.47425 * 125.64448 * 173.90221 * 9 7 2 26 26 H 0.97000 * 120.00054 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.87864 * 61.60505 * 10 9 7 28 28 H 1.08992 * 109.88157 * 300.43816 * 10 9 7 29 29 H 0.96703 * 114.00364 * 66.47539 * 13 11 10 30 30 H 1.09009 * 109.46964 * 305.00300 * 16 14 11 31 31 H 1.09001 * 109.47120 * 64.99855 * 16 14 11 32 32 H 0.96997 * 120.00268 * 359.97438 * 17 16 14 33 33 H 1.09000 * 110.91236 * 59.30151 * 20 18 17 34 34 H 1.09000 * 110.39112 * 336.14489 * 21 20 18 35 35 H 1.09000 * 110.38651 * 98.52299 * 21 20 18 36 36 H 1.08010 * 124.43149 * 196.42997 * 22 21 20 37 37 H 1.08001 * 124.44357 * 180.02562 * 23 22 21 38 38 H 1.09001 * 110.39332 * 224.75361 * 24 23 22 39 39 H 1.09001 * 110.48764 * 102.41673 * 24 23 22 40 40 H 1.09002 * 110.36800 * 37.07704 * 25 9 7 41 41 H 1.09000 * 110.37091 * 274.74809 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2055 0.1107 9 7 1.3328 -2.3838 -0.1420 10 6 -0.1293 -2.5346 -0.1757 11 6 -0.4312 -4.0408 -0.3232 12 1 -0.6024 -4.3021 -1.3675 13 8 -1.5535 -4.4124 0.4796 14 6 0.8661 -4.7086 0.2042 15 1 0.8581 -4.7724 1.2924 16 6 1.0653 -6.0903 -0.4218 17 7 2.2302 -6.7384 0.1858 18 6 2.5993 -7.9719 -0.2128 19 8 1.9668 -8.5454 -1.0742 20 6 3.7980 -8.6383 0.4118 21 6 5.0961 -7.8636 0.0866 22 6 6.1421 -8.9360 -0.1158 23 6 5.5890 -10.1037 -0.3002 24 6 4.0820 -10.0055 -0.2527 25 6 1.9488 -3.7153 -0.2866 26 1 -0.4850 0.8400 0.0004 27 1 -0.5386 -1.9894 -1.0262 28 1 -0.5622 -2.1587 0.7513 29 1 -2.3898 -4.0212 0.1918 30 1 0.1783 -6.6996 -0.2473 31 1 1.2273 -5.9833 -1.4944 32 1 2.7362 -6.2796 0.8744 33 1 3.6661 -8.7464 1.4884 34 1 4.9711 -7.2786 -0.8246 35 1 5.3709 -7.2165 0.9196 36 1 7.2076 -8.7591 -0.1079 37 1 6.1366 -11.0198 -0.4653 38 1 3.6675 -10.8138 0.3498 39 1 3.6660 -10.0319 -1.2598 40 1 2.8415 -3.7898 0.3346 41 1 2.1951 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957944488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:10 Heat of formation + Delta-G solvation = -71.725546 kcal Electronic energy + Delta-G solvation = -21959.910073 eV Core-core repulsion = 18646.444089 eV Total energy + Delta-G solvation = -3313.465984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27561 -39.93212 -38.48703 -36.65379 -36.07892 -34.04086 -31.77648 -30.36016 -29.25309 -28.99469 -27.18690 -25.27570 -23.17173 -22.16721 -21.58701 -20.62828 -19.65026 -18.95742 -18.42681 -18.04649 -17.23976 -17.06268 -16.68154 -16.08125 -15.92065 -15.67208 -15.08888 -14.62631 -14.41146 -14.07129 -13.78998 -13.73797 -13.37933 -13.23533 -13.10316 -13.01072 -12.75254 -12.64108 -12.48895 -12.27295 -12.14265 -12.02941 -11.91818 -11.78531 -11.48853 -10.95806 -10.75843 -10.71126 -10.10767 -9.77477 -8.93703 -7.88142 -5.23660 1.39256 1.46747 1.48432 1.57136 1.61134 2.15487 2.47779 3.21838 3.34429 3.49261 3.57714 3.63517 3.70978 3.89072 3.96930 4.14579 4.27133 4.38974 4.39474 4.46407 4.59710 4.63761 4.75645 4.80928 4.85041 4.88134 4.94934 4.96284 5.09782 5.20566 5.27480 5.41782 5.44475 5.47197 5.64454 5.69449 6.01692 6.15657 6.54008 6.86927 7.06179 7.22236 7.73192 8.37169 9.22574 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.003794 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.945478 B = 7378.893868 C = 8512.022263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.244 4.244 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.096 3.904 12 H 0.073 0.927 13 O -0.570 6.570 14 C -0.089 4.089 15 H 0.088 0.912 16 C 0.146 3.854 17 N -0.714 5.714 18 C 0.520 3.480 19 O -0.585 6.585 20 C -0.112 4.112 21 C -0.092 4.092 22 C -0.169 4.169 23 C -0.169 4.169 24 C -0.091 4.091 25 C 0.140 3.860 26 H 0.247 0.753 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.393 0.607 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -17.311 1.857 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.106 0.894 9 N -0.352 5.352 10 C 0.035 3.965 11 C 0.035 3.965 12 H 0.091 0.909 13 O -0.377 6.377 14 C -0.108 4.108 15 H 0.106 0.894 16 C 0.022 3.978 17 N -0.365 5.365 18 C 0.308 3.692 19 O -0.465 6.465 20 C -0.133 4.133 21 C -0.129 4.129 22 C -0.187 4.187 23 C -0.187 4.187 24 C -0.128 4.128 25 C 0.016 3.984 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.242 0.758 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.538 -17.824 1.590 19.828 hybrid contribution -0.315 1.860 -0.173 1.894 sum 8.223 -15.965 1.417 18.014 Atomic orbital electron populations 1.70168 1.06395 1.25356 1.57956 1.25684 0.96599 1.01131 1.02427 0.85066 0.77983 0.79128 0.77201 1.21549 1.22327 1.18904 1.19503 0.91791 0.83591 1.42398 0.89416 1.44617 1.02028 1.02565 1.86028 1.21594 0.84845 0.91740 0.98355 1.22895 0.86200 0.93614 0.93742 0.90898 1.86387 1.19146 1.73949 1.58205 1.22408 0.94191 0.93083 1.01133 0.89370 1.21082 0.88547 0.91202 0.97018 1.45941 1.31059 1.17252 1.42283 1.20922 0.85626 0.80938 0.81715 1.90670 1.56727 1.65170 1.33928 1.22229 0.92128 0.96519 1.02474 1.21390 0.91078 0.97705 1.02758 1.23424 0.99845 0.94346 1.01058 1.23420 0.95009 0.99249 1.01021 1.21281 0.94680 0.95553 1.01301 1.21782 0.95071 0.83572 0.98021 0.94378 0.96669 0.96549 0.75757 0.91555 0.91918 0.74938 0.85312 0.91335 0.88256 0.83791 0.83979 0.90016 0.91292 0.92315 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 10.36 21.65 0.22 -56.11 16 2 C -0.07 -3.65 5.48 84.87 0.47 -3.18 16 3 Si 0.98 44.85 29.56 68.60 2.03 46.88 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.24 -13.30 10.26 84.04 0.86 -12.44 16 8 H 0.09 4.50 7.84 -2.91 -0.02 4.48 16 9 N -0.63 -31.10 3.39 -691.98 -2.35 -33.45 16 10 C 0.16 7.74 5.15 86.73 0.45 8.19 16 11 C 0.10 3.48 3.80 31.78 0.12 3.60 16 12 H 0.07 2.44 8.04 -2.38 -0.02 2.42 16 13 O -0.57 -19.07 13.39 -148.98 -1.99 -21.07 16 14 C -0.09 -2.87 2.77 -9.40 -0.03 -2.90 16 15 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 16 C 0.15 4.11 5.13 86.38 0.44 4.55 16 17 N -0.71 -16.75 5.49 -463.06 -2.54 -19.29 16 18 C 0.52 13.11 7.06 87.66 0.62 13.73 16 19 O -0.58 -19.65 15.53 -3.05 -0.05 -19.69 16 20 C -0.11 -2.01 3.54 -10.43 -0.04 -2.05 16 21 C -0.09 -1.44 6.37 30.55 0.19 -1.24 16 22 C -0.17 -2.42 10.78 26.29 0.28 -2.14 16 23 C -0.17 -2.55 10.77 26.26 0.28 -2.26 16 24 C -0.09 -1.69 6.16 30.53 0.19 -1.51 16 25 C 0.14 5.29 6.65 86.86 0.58 5.87 16 26 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.02 0.82 7.37 -2.39 -0.02 0.80 16 28 H 0.02 0.90 7.46 -2.39 -0.02 0.88 16 29 H 0.39 10.19 9.12 -74.06 -0.68 9.51 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 31 H 0.06 1.87 7.96 -2.39 -0.02 1.85 16 32 H 0.41 7.80 8.47 -92.71 -0.79 7.01 16 33 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.27 7.88 -2.39 -0.02 1.25 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.65 7.00 -2.39 -0.02 1.63 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.03 1.06 7.91 -2.39 -0.02 1.04 16 Total: -1.00 -71.39 335.31 -0.69 -72.08 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.42 Total: 22.45 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 4.42 Total: 8.21 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -4.67 Total: -108.85 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -2.04 Total: -40.76 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.39 -0.69 -72.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957944488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.355 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds