Wall clock time and date at job start Tue Mar 31 2020 02:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48511 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 119.99821 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 13 13 O 1.42901 * 111.00253 * 81.06291 * 11 10 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 15 15 H 1.08993 * 110.71917 * 277.13865 * 14 11 10 16 16 C 1.52997 * 110.71789 * 153.86302 * 14 11 10 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 14 11 18 18 C 1.34779 * 120.00047 * 180.02562 * 17 16 14 19 19 O 1.21610 * 119.99497 * 0.02562 * 18 17 16 20 20 C 1.47094 * 119.99849 * 180.02562 * 18 17 16 21 21 C 1.32609 * 124.62021 * 179.69921 * 20 18 17 22 22 C 1.51120 * 110.76093 * 179.84305 * 21 20 18 23 23 C 1.54574 * 104.89613 * 343.80464 * 22 21 20 24 24 C 1.51111 * 124.62202 * 359.97438 * 20 18 17 25 25 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 26 26 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 28 28 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 29 29 H 0.96700 * 113.99672 * 67.80895 * 13 11 10 30 30 H 1.08993 * 109.47505 * 300.02434 * 16 14 11 31 31 H 1.09004 * 109.46953 * 60.02320 * 16 14 11 32 32 H 0.97001 * 119.99639 * 359.97438 * 17 16 14 33 33 H 1.08003 * 124.62077 * 0.02562 * 21 20 18 34 34 H 1.08996 * 110.52177 * 224.85293 * 22 21 20 35 35 H 1.09000 * 110.24486 * 102.61759 * 22 21 20 36 36 H 1.09001 * 110.98622 * 266.70438 * 23 22 21 37 37 H 1.09008 * 111.01273 * 142.92784 * 23 22 21 38 38 H 1.08999 * 110.36952 * 315.44399 * 24 20 18 39 39 H 1.09007 * 110.36749 * 77.76124 * 24 20 18 40 40 H 1.08997 * 109.88723 * 59.48965 * 25 9 7 41 41 H 1.08998 * 109.88661 * 298.31946 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -1.3585 -4.3328 0.2808 13 8 -0.3344 -3.8871 2.0401 14 6 0.7787 -4.7525 0.0273 15 1 0.5453 -5.0982 -0.9796 16 6 1.1244 -5.9311 0.9396 17 7 2.2398 -6.6851 0.3618 18 6 2.7180 -7.7735 0.9967 19 8 2.2233 -8.1299 2.0489 20 6 3.8383 -8.5302 0.4168 21 6 4.3831 -9.6080 0.9646 22 6 5.5076 -10.1360 0.1041 23 6 5.3071 -9.4592 -1.2710 24 6 4.5290 -8.1819 -0.8813 25 6 1.9320 -3.7274 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 -0.5987 -1.7588 0.6167 28 1 -0.5283 -2.4851 -1.0170 29 1 -1.0513 -3.3852 2.4515 30 1 1.4091 -5.5579 1.9232 31 1 0.2561 -6.5830 1.0356 32 1 2.6335 -6.4013 -0.4781 33 1 4.0645 -10.0500 1.8971 34 1 5.4382 -11.2194 0.0073 35 1 6.4713 -9.8546 0.5285 36 1 4.7146 -10.0898 -1.9338 37 1 6.2651 -9.2091 -1.7270 38 1 3.7942 -7.9363 -1.6480 39 1 5.2168 -7.3492 -0.7335 40 1 2.5590 -3.8505 0.8825 41 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957964205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:16 Heat of formation + Delta-G solvation = -47.650414 kcal Electronic energy + Delta-G solvation = -22016.865101 eV Core-core repulsion = 18704.443092 eV Total energy + Delta-G solvation = -3312.422008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98285 -38.45450 -37.63148 -34.85254 -34.48975 -32.17937 -30.17596 -29.27158 -28.52721 -27.59019 -25.47407 -23.70861 -21.98866 -20.92328 -20.29875 -19.72725 -18.58149 -17.30577 -17.25992 -16.30907 -15.97315 -15.57234 -14.91043 -14.83102 -14.35406 -14.16282 -13.79455 -13.25418 -13.05173 -12.86267 -12.66221 -12.33581 -12.18328 -11.93529 -11.85844 -11.49823 -11.42096 -11.33226 -11.23857 -10.79148 -10.65407 -10.36810 -10.20781 -10.03212 -9.82855 -9.70072 -9.15583 -9.09490 -8.79653 -8.67701 -6.84328 -5.68797 -3.08855 1.31373 3.33696 3.38458 3.39574 3.43668 3.44830 4.28907 4.36070 4.46917 4.72512 4.75300 4.88717 5.06804 5.16794 5.33126 5.37529 5.43574 5.44665 5.51835 5.54337 5.55945 5.63618 5.70385 5.90848 5.92147 6.06966 6.11991 6.17753 6.37600 6.38477 6.45068 6.54906 6.68288 6.87191 7.28544 7.57266 7.66183 7.75460 8.24229 8.34563 8.38679 9.18707 9.80158 10.44313 11.36047 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.003755 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.221318 B = 7454.927365 C = 8247.963832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.054 0.946 13 O -0.557 6.557 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.139 3.861 17 N -0.720 5.720 18 C 0.561 3.439 19 O -0.547 6.547 20 C -0.189 4.189 21 C -0.081 4.081 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.093 4.093 25 C 0.145 3.855 26 H 0.252 0.748 27 H 0.112 0.888 28 H 0.019 0.981 29 H 0.375 0.625 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -17.326 -2.809 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.021 3.979 12 H 0.072 0.928 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.103 0.897 16 C 0.016 3.984 17 N -0.371 5.371 18 C 0.349 3.651 19 O -0.426 6.426 20 C -0.192 4.192 21 C -0.100 4.100 22 C -0.143 4.143 23 C -0.160 4.160 24 C -0.131 4.131 25 C 0.019 3.981 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.037 0.963 29 H 0.222 0.778 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 5.871 -17.668 -2.182 18.745 hybrid contribution 0.104 1.413 -0.423 1.479 sum 5.974 -16.255 -2.605 17.513 Atomic orbital electron populations 1.69733 1.04916 1.24891 1.57968 1.24759 0.95747 0.97709 1.02484 0.86129 0.78398 0.82936 0.77904 1.21240 1.21571 1.21140 1.19044 0.90503 0.82451 1.42769 0.90536 1.44336 1.01535 0.99753 1.86710 1.22587 0.85724 0.92991 0.98608 1.23197 0.95137 0.98110 0.81408 0.92786 1.86398 1.54309 1.76639 1.18906 1.22508 0.97417 0.94417 0.98239 0.89668 1.21243 0.88047 0.91347 0.97731 1.46026 1.36251 1.28429 1.26355 1.17964 0.82628 0.80376 0.84148 1.90784 1.60367 1.68761 1.22703 1.21904 0.98741 0.98972 0.99596 1.24012 0.93615 0.94081 0.98341 1.21469 0.97604 1.00762 0.94495 1.22421 1.00600 0.96307 0.96700 1.21273 0.98763 0.98825 0.94204 1.21304 0.93393 0.85637 0.97785 0.93698 0.87076 0.96309 0.77839 0.90080 0.91829 0.76568 0.84530 0.90345 0.89742 0.90864 0.90503 0.90711 0.89988 0.95379 0.96364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.59 10.09 55.49 0.56 -26.03 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 10 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 11 C 0.08 1.53 4.17 -24.57 -0.10 1.43 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 13 O -0.56 -10.50 12.22 -35.23 -0.43 -10.93 16 14 C -0.11 -1.84 2.95 -88.78 -0.26 -2.10 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.14 2.30 4.59 -4.04 -0.02 2.28 16 17 N -0.72 -10.33 5.39 -61.49 -0.33 -10.66 16 18 C 0.56 8.61 7.79 -12.67 -0.10 8.51 16 19 O -0.55 -10.44 16.77 5.27 0.09 -10.35 16 20 C -0.19 -2.23 6.09 -102.73 -0.63 -2.86 16 21 C -0.08 -0.83 10.43 -36.00 -0.38 -1.21 16 22 C -0.11 -0.77 6.80 -26.85 -0.18 -0.96 16 23 C -0.12 -0.86 7.16 -25.09 -0.18 -1.04 16 24 C -0.09 -0.83 6.02 -26.86 -0.16 -0.99 16 25 C 0.14 3.01 6.52 -3.06 -0.02 2.99 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.37 5.76 9.12 45.56 0.42 6.17 16 30 H 0.08 1.57 7.44 -51.93 -0.39 1.18 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 4.86 7.33 -40.82 -0.30 4.56 16 33 H 0.14 1.44 8.03 -52.48 -0.42 1.02 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 333.59 15.07 5.03 5.03 Total: -1.00 -33.43 333.59 -8.56 -41.99 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.58 Total: 7.45 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.29 Total: 2.30 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.35 Total: -52.52 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.34 Total: -21.28 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.43 -8.56 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.659 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds