Wall clock time and date at job start Tue Mar 31 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47223 * 240.00101 * 3 2 1 5 5 H 1.48511 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 119.99821 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 13 13 O 1.42901 * 111.00253 * 81.06291 * 11 10 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 15 15 H 1.08993 * 110.71917 * 277.13865 * 14 11 10 16 16 C 1.52997 * 110.71789 * 153.86302 * 14 11 10 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 14 11 18 18 C 1.34779 * 120.00047 * 180.02562 * 17 16 14 19 19 O 1.21610 * 119.99497 * 0.02562 * 18 17 16 20 20 C 1.47094 * 119.99849 * 180.02562 * 18 17 16 21 21 C 1.32609 * 124.62021 * 179.69921 * 20 18 17 22 22 C 1.51120 * 110.76093 * 179.84305 * 21 20 18 23 23 C 1.54574 * 104.89613 * 343.80464 * 22 21 20 24 24 C 1.51111 * 124.62202 * 359.97438 * 20 18 17 25 25 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 26 26 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 27 27 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 28 28 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 29 29 H 0.96700 * 113.99672 * 67.80895 * 13 11 10 30 30 H 1.08993 * 109.47505 * 300.02434 * 16 14 11 31 31 H 1.09004 * 109.46953 * 60.02320 * 16 14 11 32 32 H 0.97001 * 119.99639 * 359.97438 * 17 16 14 33 33 H 1.08003 * 124.62077 * 0.02562 * 21 20 18 34 34 H 1.08996 * 110.52177 * 224.85293 * 22 21 20 35 35 H 1.09000 * 110.24486 * 102.61759 * 22 21 20 36 36 H 1.09001 * 110.98622 * 266.70438 * 23 22 21 37 37 H 1.09008 * 111.01273 * 142.92784 * 23 22 21 38 38 H 1.08999 * 110.36952 * 315.44399 * 24 20 18 39 39 H 1.09007 * 110.36749 * 77.76124 * 24 20 18 40 40 H 1.08997 * 109.88723 * 59.48965 * 25 9 7 41 41 H 1.08998 * 109.88661 * 298.31946 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -1.3585 -4.3328 0.2808 13 8 -0.3344 -3.8871 2.0401 14 6 0.7787 -4.7525 0.0273 15 1 0.5453 -5.0982 -0.9796 16 6 1.1244 -5.9311 0.9396 17 7 2.2398 -6.6851 0.3618 18 6 2.7180 -7.7735 0.9967 19 8 2.2233 -8.1299 2.0489 20 6 3.8383 -8.5302 0.4168 21 6 4.3831 -9.6080 0.9646 22 6 5.5076 -10.1360 0.1041 23 6 5.3071 -9.4592 -1.2710 24 6 4.5290 -8.1819 -0.8813 25 6 1.9320 -3.7274 -0.0005 26 1 -0.4850 0.8400 0.0004 27 1 -0.5987 -1.7588 0.6167 28 1 -0.5283 -2.4851 -1.0170 29 1 -1.0513 -3.3852 2.4515 30 1 1.4091 -5.5579 1.9232 31 1 0.2561 -6.5830 1.0356 32 1 2.6335 -6.4013 -0.4781 33 1 4.0645 -10.0500 1.8971 34 1 5.4382 -11.2194 0.0073 35 1 6.4713 -9.8546 0.5285 36 1 4.7146 -10.0898 -1.9338 37 1 6.2651 -9.2091 -1.7270 38 1 3.7942 -7.9363 -1.6480 39 1 5.2168 -7.3492 -0.7335 40 1 2.5590 -3.8505 0.8825 41 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957964205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:15 Heat of formation + Delta-G solvation = -72.399802 kcal Electronic energy + Delta-G solvation = -22017.938315 eV Core-core repulsion = 18704.443092 eV Total energy + Delta-G solvation = -3313.495222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11454 -39.90921 -38.60204 -36.34747 -36.10528 -33.97781 -31.66129 -30.29912 -29.54291 -29.00288 -27.20717 -25.31357 -23.11312 -22.14370 -21.50429 -21.21904 -19.72275 -19.10926 -18.27547 -17.87852 -16.99953 -16.82484 -16.60272 -16.08558 -15.76012 -15.62015 -15.40519 -14.70232 -14.43257 -13.97299 -13.80714 -13.64686 -13.57117 -13.17930 -13.04157 -12.93115 -12.62907 -12.57884 -12.37033 -12.06493 -12.04842 -11.96977 -11.87104 -11.83327 -11.64995 -10.98554 -10.80377 -10.66795 -10.21013 -9.81019 -8.86397 -7.78867 -5.21422 0.38436 1.46118 1.49059 1.55194 2.19248 2.27771 2.49002 3.27485 3.35081 3.54604 3.59875 3.66666 3.88509 3.96076 3.98172 4.12439 4.23392 4.33310 4.42044 4.58282 4.62663 4.78154 4.82968 4.84305 4.89412 4.93592 4.99589 5.00376 5.20091 5.30754 5.34338 5.38483 5.39438 5.44290 5.50625 5.55591 5.76849 6.28475 6.53545 6.95505 7.10690 7.19300 7.77513 8.40490 9.23109 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.003755 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.221318 B = 7454.927365 C = 8247.963832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.092 3.908 12 H 0.090 0.910 13 O -0.570 6.570 14 C -0.091 4.091 15 H 0.115 0.885 16 C 0.154 3.846 17 N -0.712 5.712 18 C 0.556 3.444 19 O -0.594 6.594 20 C -0.215 4.215 21 C -0.070 4.070 22 C -0.103 4.103 23 C -0.117 4.117 24 C -0.092 4.092 25 C 0.143 3.857 26 H 0.247 0.753 27 H 0.080 0.920 28 H 0.003 0.997 29 H 0.388 0.612 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.011 0.989 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -18.782 -4.086 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.002 3.998 11 C 0.032 3.968 12 H 0.108 0.892 13 O -0.378 6.378 14 C -0.110 4.110 15 H 0.133 0.867 16 C 0.030 3.970 17 N -0.362 5.362 18 C 0.346 3.654 19 O -0.477 6.477 20 C -0.218 4.218 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.129 4.129 25 C 0.018 3.982 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.021 0.979 29 H 0.237 0.763 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.029 0.971 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.132 -19.137 -3.485 20.718 hybrid contribution -0.262 1.827 0.031 1.846 sum 6.870 -17.311 -3.454 18.942 Atomic orbital electron populations 1.69979 1.06019 1.25092 1.58627 1.25567 0.96694 1.00762 1.02673 0.85144 0.77178 0.78871 0.78076 1.20294 1.21777 1.20747 1.19393 0.90939 0.83918 1.42645 0.90544 1.44643 1.02604 1.00719 1.86689 1.22447 0.84727 0.95217 0.97428 1.23116 0.97306 0.95279 0.81108 0.89222 1.86386 1.55467 1.76816 1.19096 1.22456 0.95322 0.93421 0.99810 0.86712 1.20914 0.88851 0.91165 0.96064 1.45901 1.35676 1.27992 1.26657 1.18575 0.83025 0.80271 0.83519 1.90752 1.62099 1.70029 1.24793 1.21909 0.98674 0.99643 1.01603 1.24358 0.93629 0.93042 0.97949 1.21549 0.96610 1.01810 0.93992 1.22450 1.01263 0.95186 0.96574 1.21317 0.98892 0.99958 0.92709 1.21415 0.94567 0.84715 0.97498 0.94281 0.90257 0.97911 0.76293 0.93268 0.91246 0.75108 0.85444 0.88474 0.88412 0.90116 0.88754 0.90064 0.89914 0.97074 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.47 10.09 21.65 0.22 -55.26 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.56 10.27 84.03 0.86 -12.70 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -31.91 3.39 -691.99 -2.35 -34.26 16 10 C 0.13 6.04 5.62 86.86 0.49 6.53 16 11 C 0.09 3.34 4.17 31.99 0.13 3.47 16 12 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 13 O -0.57 -21.28 12.22 -148.98 -1.82 -23.10 16 14 C -0.09 -3.00 2.95 -9.60 -0.03 -3.03 16 15 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 16 C 0.15 4.95 4.59 86.38 0.40 5.35 16 17 N -0.71 -19.75 5.39 -466.72 -2.52 -22.27 16 18 C 0.56 16.90 7.79 86.57 0.67 17.58 16 19 O -0.59 -23.06 16.77 -4.06 -0.07 -23.13 16 20 C -0.22 -4.82 6.09 -18.57 -0.11 -4.93 16 21 C -0.07 -1.34 10.43 24.66 0.26 -1.08 16 22 C -0.10 -1.18 6.80 30.52 0.21 -0.97 16 23 C -0.12 -1.25 7.16 31.66 0.23 -1.02 16 24 C -0.09 -1.41 6.02 30.51 0.18 -1.23 16 25 C 0.14 5.89 6.52 86.73 0.57 6.46 16 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.39 11.84 9.12 -74.06 -0.68 11.17 16 30 H 0.05 1.92 7.44 -2.39 -0.02 1.90 16 31 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.41 9.33 7.33 -92.71 -0.68 8.65 16 33 H 0.13 2.63 8.03 -2.91 -0.02 2.60 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.08 1.12 7.83 -2.39 -0.02 1.10 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.01 0.50 7.76 -2.39 -0.02 0.48 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.92 333.59 -0.50 -74.43 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.31 Total: 24.67 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 4.32 Total: 11.25 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.65 Total: -111.78 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.89 Total: -46.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.92 -0.50 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.026 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds