Wall clock time and date at job start Tue Mar 31 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 H 1.09003 * 110.90391 * 155.27343 * 11 10 9 13 13 O 1.42903 * 111.22479 * 279.17527 * 11 10 9 14 14 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 15 15 H 1.09003 * 110.71834 * 82.69257 * 14 11 10 16 16 C 1.52998 * 110.87269 * 205.89774 * 14 11 10 17 17 N 1.46495 * 109.47101 * 180.02562 * 16 14 11 18 18 C 1.34778 * 120.00075 * 180.02562 * 17 16 14 19 19 O 1.21615 * 120.00008 * 359.97438 * 18 17 16 20 20 C 1.47104 * 120.00249 * 180.02562 * 18 17 16 21 21 C 1.32610 * 124.62396 * 179.70161 * 20 18 17 22 22 C 1.51110 * 110.75964 * 179.84145 * 21 20 18 23 23 C 1.54572 * 104.90304 * 343.80334 * 22 21 20 24 24 C 1.51113 * 124.61879 * 359.97438 * 20 18 17 25 25 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 26 26 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 27 27 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 28 28 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 29 29 H 0.96696 * 113.99732 * 292.20397 * 13 11 10 30 30 H 1.08998 * 109.47073 * 300.06479 * 16 14 11 31 31 H 1.08993 * 109.47175 * 60.06183 * 16 14 11 32 32 H 0.97009 * 120.00648 * 0.02562 * 17 16 14 33 33 H 1.07998 * 124.61855 * 359.97438 * 21 20 18 34 34 H 1.08996 * 110.51843 * 224.84659 * 22 21 20 35 35 H 1.09004 * 110.24414 * 102.62241 * 22 21 20 36 36 H 1.09002 * 110.98377 * 266.71161 * 23 22 21 37 37 H 1.08999 * 110.98229 * 142.91372 * 23 22 21 38 38 H 1.09003 * 110.36387 * 315.44338 * 24 20 18 39 39 H 1.08999 * 110.36242 * 77.75879 * 24 20 18 40 40 H 1.08999 * 109.88184 * 300.44569 * 25 9 7 41 41 H 1.09000 * 109.87675 * 61.44592 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 1 -0.6099 -4.0043 -2.5516 13 8 1.2459 -3.4743 -3.3367 14 6 0.9848 -4.6199 -1.1784 15 1 0.2095 -5.0425 -0.5393 16 6 1.7809 -5.7305 -1.8668 17 7 2.3478 -6.6245 -0.8542 18 6 3.0935 -7.6822 -1.2307 19 8 3.2953 -7.8947 -2.4110 20 6 3.6624 -8.5803 -0.2139 21 6 4.4026 -9.6478 -0.4808 22 6 4.8242 -10.3397 0.7947 23 6 4.5744 -9.3009 1.9117 24 6 3.4780 -8.4156 1.2768 25 6 1.9207 -3.7004 -0.3661 26 1 -0.4850 -0.8356 0.0856 27 1 -0.6627 -2.3720 -0.7823 28 1 0.2237 -1.4797 -2.0563 29 1 0.9031 -2.8776 -4.0160 30 1 1.1208 -6.2969 -2.5238 31 1 2.5866 -5.2896 -2.4536 32 1 2.1866 -6.4553 0.0873 33 1 4.6695 -9.9765 -1.4743 34 1 5.8803 -10.6061 0.7536 35 1 4.2157 -11.2288 0.9604 36 1 5.4751 -8.7212 2.1142 37 1 4.2103 -9.7832 2.8189 38 1 3.6187 -7.3733 1.5635 39 1 2.4894 -8.7624 1.5774 40 1 2.9412 -3.7874 -0.7390 41 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957964206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:19 Heat of formation + Delta-G solvation = -51.330271 kcal Electronic energy + Delta-G solvation = -22045.434958 eV Core-core repulsion = 18732.853380 eV Total energy + Delta-G solvation = -3312.581579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04200 -38.65273 -37.71371 -35.02492 -34.73468 -32.32528 -30.17756 -29.26468 -28.54660 -27.86758 -25.30768 -23.77408 -22.03817 -20.95464 -20.39746 -19.88522 -18.66067 -17.72219 -17.32751 -16.77522 -16.00256 -15.63256 -15.02327 -14.65081 -14.37846 -14.30882 -13.72588 -13.42067 -13.25598 -13.02195 -12.91739 -12.50326 -12.30302 -12.12140 -11.89542 -11.59228 -11.48688 -11.42566 -11.00557 -10.74578 -10.67151 -10.54604 -10.37251 -10.05699 -9.82435 -9.67905 -9.31520 -9.19436 -8.86725 -8.43568 -6.96086 -6.11853 -3.13545 1.27357 3.27562 3.32358 3.51285 3.54328 3.68079 4.26559 4.32805 4.50679 4.60497 4.71384 4.84202 4.99329 5.04625 5.16973 5.21173 5.29563 5.36827 5.40688 5.52370 5.53760 5.55770 5.68589 5.71114 5.86427 5.89503 5.92374 6.11019 6.23231 6.26390 6.34794 6.47249 6.56259 6.71532 6.82787 6.88366 7.59374 7.74230 8.08229 8.29127 8.45977 8.99749 9.79498 10.33178 11.21684 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.003777 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.912470 B = 7411.083297 C = 8130.659579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.028 4.028 3 Si 1.069 2.931 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.118 3.882 11 C 0.092 3.908 12 H 0.060 0.940 13 O -0.553 6.553 14 C -0.107 4.107 15 H 0.087 0.913 16 C 0.140 3.860 17 N -0.721 5.721 18 C 0.562 3.438 19 O -0.547 6.547 20 C -0.190 4.190 21 C -0.079 4.079 22 C -0.106 4.106 23 C -0.123 4.123 24 C -0.094 4.094 25 C 0.146 3.854 26 H 0.268 0.732 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.375 0.625 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -18.206 1.306 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.228 4.228 3 Si 0.899 3.101 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.458 4.458 8 H 0.084 0.916 9 N -0.325 5.325 10 C -0.008 4.008 11 C 0.032 3.968 12 H 0.078 0.922 13 O -0.359 6.359 14 C -0.126 4.126 15 H 0.105 0.895 16 C 0.017 3.983 17 N -0.371 5.371 18 C 0.350 3.650 19 O -0.426 6.426 20 C -0.193 4.193 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.131 4.131 25 C 0.020 3.980 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.380 -17.000 0.791 17.573 hybrid contribution -0.357 -1.095 0.313 1.193 sum 4.022 -18.095 1.104 18.569 Atomic orbital electron populations 1.70749 1.06593 1.30129 1.49104 1.25707 0.96463 1.00909 0.99747 0.83479 0.74406 0.75577 0.76659 1.21860 1.22208 1.21672 1.19817 0.99372 0.87781 1.38860 0.91572 1.44407 1.30750 1.01196 1.56123 1.22272 0.90815 0.94938 0.92793 1.23011 0.91177 0.96189 0.86448 0.92198 1.86443 1.47598 1.69587 1.32238 1.22506 0.98623 0.94607 0.96867 0.89457 1.21201 0.97852 0.89292 0.89971 1.45997 1.52523 1.27717 1.10879 1.17968 0.78304 0.80679 0.88064 1.90785 1.60160 1.73456 1.18173 1.21894 1.03364 0.98550 0.95488 1.24020 0.93090 0.93316 0.99486 1.21470 1.02005 0.98686 0.92169 1.22424 0.98974 0.96905 0.97754 1.21274 0.99849 1.01211 0.90765 1.21311 0.95688 0.85355 0.95626 0.92052 0.95007 0.92389 0.77788 0.91717 0.90062 0.76515 0.84515 0.90266 0.89787 0.90716 0.90507 0.90530 0.90199 0.95152 0.96192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 12.82 55.49 0.71 -26.97 16 2 C -0.03 -0.79 5.09 -17.43 -0.09 -0.88 16 3 Si 1.07 25.66 30.00 -169.99 -5.10 20.56 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.33 -9.43 10.05 -15.06 -0.15 -9.58 16 8 H 0.07 1.90 7.96 -52.49 -0.42 1.48 16 9 N -0.60 -15.18 3.33 -169.94 -0.57 -15.74 16 10 C 0.12 2.67 4.97 -2.41 -0.01 2.65 16 11 C 0.09 1.63 4.17 -24.47 -0.10 1.53 16 12 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 13 O -0.55 -9.79 12.25 -35.23 -0.43 -10.22 16 14 C -0.11 -1.79 2.93 -88.79 -0.26 -2.05 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 16 C 0.14 2.24 4.60 -4.05 -0.02 2.22 16 17 N -0.72 -10.18 5.39 -61.50 -0.33 -10.51 16 18 C 0.56 8.50 7.79 -12.66 -0.10 8.41 16 19 O -0.55 -10.27 16.77 5.26 0.09 -10.19 16 20 C -0.19 -2.22 6.09 -102.73 -0.63 -2.85 16 21 C -0.08 -0.81 10.43 -36.01 -0.38 -1.19 16 22 C -0.11 -0.77 6.80 -26.86 -0.18 -0.95 16 23 C -0.12 -0.89 7.16 -25.08 -0.18 -1.07 16 24 C -0.09 -0.83 6.02 -26.86 -0.16 -0.99 16 25 C 0.15 3.04 6.52 -3.07 -0.02 3.02 16 26 H 0.27 7.96 5.83 -40.82 -0.24 7.72 16 27 H 0.03 0.75 6.84 -51.93 -0.36 0.40 16 28 H 0.06 1.44 7.73 -51.93 -0.40 1.04 16 29 H 0.38 5.20 9.12 45.56 0.42 5.62 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.53 7.45 -51.93 -0.39 1.14 16 32 H 0.40 4.84 7.33 -40.82 -0.30 4.54 16 33 H 0.14 1.42 8.03 -52.49 -0.42 1.00 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.67 7.77 -51.93 -0.40 0.27 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -34.88 333.67 -8.39 -43.27 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.52 Total: 6.50 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.28 Total: -1.73 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.19 Total: -53.23 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.34 Total: -20.41 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.88 -8.39 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.059 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds