Wall clock time and date at job start Tue Mar 31 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 H 1.09003 * 110.90391 * 155.27343 * 11 10 9 13 13 O 1.42903 * 111.22479 * 279.17527 * 11 10 9 14 14 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 15 15 H 1.09003 * 110.71834 * 82.69257 * 14 11 10 16 16 C 1.52998 * 110.87269 * 205.89774 * 14 11 10 17 17 N 1.46495 * 109.47101 * 180.02562 * 16 14 11 18 18 C 1.34778 * 120.00075 * 180.02562 * 17 16 14 19 19 O 1.21615 * 120.00008 * 359.97438 * 18 17 16 20 20 C 1.47104 * 120.00249 * 180.02562 * 18 17 16 21 21 C 1.32610 * 124.62396 * 179.70161 * 20 18 17 22 22 C 1.51110 * 110.75964 * 179.84145 * 21 20 18 23 23 C 1.54572 * 104.90304 * 343.80334 * 22 21 20 24 24 C 1.51113 * 124.61879 * 359.97438 * 20 18 17 25 25 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 26 26 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 27 27 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 28 28 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 29 29 H 0.96696 * 113.99732 * 292.20397 * 13 11 10 30 30 H 1.08998 * 109.47073 * 300.06479 * 16 14 11 31 31 H 1.08993 * 109.47175 * 60.06183 * 16 14 11 32 32 H 0.97009 * 120.00648 * 0.02562 * 17 16 14 33 33 H 1.07998 * 124.61855 * 359.97438 * 21 20 18 34 34 H 1.08996 * 110.51843 * 224.84659 * 22 21 20 35 35 H 1.09004 * 110.24414 * 102.62241 * 22 21 20 36 36 H 1.09002 * 110.98377 * 266.71161 * 23 22 21 37 37 H 1.08999 * 110.98229 * 142.91372 * 23 22 21 38 38 H 1.09003 * 110.36387 * 315.44338 * 24 20 18 39 39 H 1.08999 * 110.36242 * 77.75879 * 24 20 18 40 40 H 1.08999 * 109.88184 * 300.44569 * 25 9 7 41 41 H 1.09000 * 109.87675 * 61.44592 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 1 -0.6099 -4.0043 -2.5516 13 8 1.2459 -3.4743 -3.3367 14 6 0.9848 -4.6199 -1.1784 15 1 0.2095 -5.0425 -0.5393 16 6 1.7809 -5.7305 -1.8668 17 7 2.3478 -6.6245 -0.8542 18 6 3.0935 -7.6822 -1.2307 19 8 3.2953 -7.8947 -2.4110 20 6 3.6624 -8.5803 -0.2139 21 6 4.4026 -9.6478 -0.4808 22 6 4.8242 -10.3397 0.7947 23 6 4.5744 -9.3009 1.9117 24 6 3.4780 -8.4156 1.2768 25 6 1.9207 -3.7004 -0.3661 26 1 -0.4850 -0.8356 0.0856 27 1 -0.6627 -2.3720 -0.7823 28 1 0.2237 -1.4797 -2.0563 29 1 0.9031 -2.8776 -4.0160 30 1 1.1208 -6.2969 -2.5238 31 1 2.5866 -5.2896 -2.4536 32 1 2.1866 -6.4553 0.0873 33 1 4.6695 -9.9765 -1.4743 34 1 5.8803 -10.6061 0.7536 35 1 4.2157 -11.2288 0.9604 36 1 5.4751 -8.7212 2.1142 37 1 4.2103 -9.7832 2.8189 38 1 3.6187 -7.3733 1.5635 39 1 2.4894 -8.7624 1.5774 40 1 2.9412 -3.7874 -0.7390 41 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957964206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:18 Heat of formation + Delta-G solvation = -77.475144 kcal Electronic energy + Delta-G solvation = -22046.568685 eV Core-core repulsion = 18732.853380 eV Total energy + Delta-G solvation = -3313.715305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17265 -40.10342 -38.64721 -36.58442 -36.24084 -34.10293 -31.63211 -30.31825 -29.70197 -29.12392 -27.01629 -25.42444 -23.15627 -22.21378 -21.55044 -21.36785 -19.86256 -19.58932 -18.45011 -18.07967 -17.05366 -16.63287 -16.45310 -16.19117 -15.84804 -15.69446 -15.44011 -15.15688 -14.75067 -14.10941 -13.92067 -13.79999 -13.58800 -13.22451 -12.98581 -12.74183 -12.60809 -12.58685 -12.40310 -12.23353 -12.08494 -12.01093 -11.91543 -11.82189 -11.65298 -11.04230 -10.90907 -10.55919 -10.25231 -9.84172 -9.03415 -8.35300 -5.33553 0.35421 1.55809 1.63417 1.80347 2.14293 2.23632 2.60515 3.12979 3.19542 3.41112 3.50670 3.63166 3.74516 3.75011 3.83812 4.07587 4.20124 4.26690 4.30318 4.37100 4.50418 4.65700 4.74437 4.80550 4.82559 4.85094 4.90546 4.97011 4.99671 5.06751 5.16993 5.20703 5.31162 5.35452 5.41452 5.52880 5.61207 6.29246 6.48122 6.81685 6.90240 7.14527 7.67423 8.24384 8.98024 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023194 B = 0.003777 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.912470 B = 7411.083297 C = 8130.659579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.076 4.076 3 Si 1.118 2.882 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.345 4.345 8 H 0.055 0.945 9 N -0.622 5.622 10 C 0.119 3.881 11 C 0.105 3.895 12 H 0.101 0.899 13 O -0.567 6.567 14 C -0.091 4.091 15 H 0.116 0.884 16 C 0.154 3.846 17 N -0.713 5.713 18 C 0.557 3.443 19 O -0.592 6.592 20 C -0.217 4.217 21 C -0.068 4.068 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.091 4.091 25 C 0.145 3.855 26 H 0.258 0.742 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.391 0.609 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.412 0.588 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.013 0.987 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -19.838 2.145 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.271 4.271 3 Si 0.942 3.058 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.474 4.474 8 H 0.073 0.927 9 N -0.349 5.349 10 C -0.007 4.007 11 C 0.045 3.955 12 H 0.119 0.881 13 O -0.374 6.374 14 C -0.110 4.110 15 H 0.134 0.866 16 C 0.030 3.970 17 N -0.364 5.364 18 C 0.347 3.653 19 O -0.475 6.475 20 C -0.220 4.220 21 C -0.088 4.088 22 C -0.138 4.138 23 C -0.157 4.157 24 C -0.128 4.128 25 C 0.020 3.980 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.240 0.760 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.584 -18.651 1.649 19.277 hybrid contribution -0.372 -0.647 0.027 0.747 sum 4.212 -19.299 1.676 19.824 Atomic orbital electron populations 1.70848 1.07344 1.29667 1.51184 1.27018 0.96633 1.04034 0.99451 0.82824 0.74000 0.72097 0.76848 1.20387 1.21443 1.21275 1.20032 0.99096 0.89474 1.38751 0.92705 1.44678 1.31504 1.02201 1.56527 1.22277 0.89417 0.96554 0.92413 1.22974 0.93137 0.93384 0.86054 0.88118 1.86426 1.48388 1.70043 1.32564 1.22453 0.98353 0.93815 0.96383 0.86589 1.20904 0.96819 0.89176 0.90096 1.45900 1.52182 1.27171 1.11135 1.18560 0.77669 0.80838 0.88215 1.90753 1.61885 1.74649 1.20209 1.21902 1.04919 0.98886 0.96285 1.24364 0.91146 0.92568 1.00693 1.21544 1.03208 0.98927 0.90170 1.22460 0.98350 0.96546 0.98354 1.21311 1.01244 1.01538 0.88741 1.21392 0.95702 0.84317 0.96629 0.93077 0.96065 0.95457 0.75958 0.90840 0.93106 0.75201 0.85308 0.88706 0.87868 0.90807 0.88432 0.90985 0.89048 0.96874 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 12.82 21.65 0.28 -57.37 16 2 C -0.08 -4.38 5.09 84.86 0.43 -3.95 16 3 Si 1.12 52.10 30.00 68.60 2.06 54.16 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.35 -20.04 10.05 84.03 0.84 -19.19 16 8 H 0.06 3.22 7.96 -2.91 -0.02 3.19 16 9 N -0.62 -32.00 3.33 -691.57 -2.30 -34.30 16 10 C 0.12 5.43 4.97 86.93 0.43 5.86 16 11 C 0.10 3.55 4.17 32.06 0.13 3.69 16 12 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 13 O -0.57 -19.56 12.25 -148.98 -1.82 -21.39 16 14 C -0.09 -2.92 2.93 -9.61 -0.03 -2.95 16 15 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 16 C 0.15 4.79 4.60 86.38 0.40 5.19 16 17 N -0.71 -19.59 5.39 -466.73 -2.52 -22.11 16 18 C 0.56 16.73 7.79 86.57 0.67 17.41 16 19 O -0.59 -22.60 16.77 -4.08 -0.07 -22.67 16 20 C -0.22 -4.83 6.09 -18.56 -0.11 -4.95 16 21 C -0.07 -1.29 10.43 24.66 0.26 -1.03 16 22 C -0.10 -1.15 6.80 30.51 0.21 -0.95 16 23 C -0.12 -1.36 7.16 31.66 0.23 -1.14 16 24 C -0.09 -1.43 6.02 30.51 0.18 -1.25 16 25 C 0.14 6.01 6.52 86.73 0.57 6.58 16 26 H 0.26 15.73 5.83 -92.71 -0.54 15.19 16 27 H 0.02 1.03 6.84 -2.39 -0.02 1.01 16 28 H 0.03 1.38 7.73 -2.38 -0.02 1.36 16 29 H 0.39 10.49 9.12 -74.06 -0.68 9.82 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 32 H 0.41 9.41 7.33 -92.70 -0.68 8.73 16 33 H 0.13 2.60 8.03 -2.91 -0.02 2.57 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.17 7.83 -2.39 -0.02 1.15 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.01 0.59 7.77 -2.39 -0.02 0.57 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.38 333.67 -0.25 -77.63 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.09 Total: 22.71 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 4.21 Total: 3.33 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.54 Total: -113.78 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.89 Total: -44.05 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.06 Total: 54.16 kcal Total: -77.38 -0.25 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.154 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds