Wall clock time and date at job start Tue Mar 31 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48502 * 109.47348 * 239.99644 * 3 2 1 5 5 H 1.48492 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46964 * 119.99954 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.08989 * 111.04037 * 279.00643 * 11 10 9 13 13 O 1.42904 * 111.00107 * 155.16655 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21619 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.47096 * 120.00040 * 179.97438 * 18 17 16 21 21 C 1.32611 * 124.62362 * 180.02562 * 20 18 17 22 22 C 1.51110 * 110.76365 * 180.02562 * 21 20 18 23 23 C 1.54574 * 104.83594 * 16.60184 * 22 21 20 24 24 C 1.51114 * 124.62043 * 359.72184 * 20 18 17 25 25 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 26 26 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 28 28 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 29 29 H 0.96704 * 113.99765 * 67.80908 * 13 11 10 30 30 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 31 31 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 32 32 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 33 33 H 1.08007 * 124.61762 * 0.02562 * 21 20 18 34 34 H 1.09007 * 110.36707 * 135.43915 * 22 21 20 35 35 H 1.08998 * 110.36290 * 257.64892 * 22 21 20 36 36 H 1.08999 * 110.98856 * 93.07642 * 23 22 21 37 37 H 1.09007 * 110.98095 * 216.83216 * 23 22 21 38 38 H 1.09000 * 110.36321 * 282.24283 * 24 20 18 39 39 H 1.09003 * 110.36252 * 44.56033 * 24 20 18 40 40 H 1.09002 * 109.88367 * 61.61048 * 25 9 7 41 41 H 1.09000 * 109.88319 * 300.59666 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -0.3530 -3.9010 -1.7006 13 8 -1.6553 -4.4652 -0.1754 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2309 -8.1254 -2.0588 20 6 3.8484 -8.5250 -0.4291 21 6 4.3920 -9.6033 -0.9771 22 6 5.5218 -10.1274 -0.1213 23 6 5.3201 -9.4548 1.2558 24 6 4.5437 -8.1739 0.8658 25 6 1.9316 -3.7276 -0.0005 26 1 -0.4849 0.8401 0.0004 27 1 -0.6042 -1.7636 -0.6122 28 1 -0.5315 -2.4935 1.0198 29 1 -2.4238 -3.9860 -0.5144 30 1 0.2606 -6.5853 -1.0394 31 1 1.4100 -5.5564 -1.9273 32 1 2.6402 -6.4002 0.4708 33 1 4.0710 -10.0465 -1.9082 34 1 5.4552 -11.2114 -0.0274 35 1 6.4838 -9.8426 -0.5472 36 1 4.7294 -10.0887 1.9171 37 1 6.2779 -9.2042 1.7118 38 1 5.2305 -7.3413 0.7139 39 1 3.8115 -7.9273 1.6348 40 1 2.5285 -3.8644 0.9012 41 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957964207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:21 Heat of formation + Delta-G solvation = -50.353685 kcal Electronic energy + Delta-G solvation = -21877.414447 eV Core-core repulsion = 18564.875216 eV Total energy + Delta-G solvation = -3312.539231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02025 -38.42915 -37.64512 -35.16756 -34.61391 -32.27135 -30.22075 -29.28372 -28.51602 -27.46639 -25.54256 -23.68938 -22.01706 -20.95341 -20.37247 -19.87852 -18.64886 -17.32750 -17.03712 -16.64986 -15.98802 -15.64377 -15.21364 -14.87787 -14.41600 -14.06239 -13.73995 -13.11086 -13.00388 -12.92165 -12.81266 -12.42704 -12.18354 -11.97431 -11.88222 -11.59071 -11.47150 -11.40857 -11.25332 -10.96532 -10.80916 -10.65901 -10.09929 -10.03166 -9.83791 -9.66089 -9.19260 -9.16744 -8.86207 -8.72717 -6.92992 -5.73259 -3.15674 1.28442 3.28821 3.32669 3.36729 3.40906 3.42236 4.27152 4.33392 4.40771 4.70207 4.72135 4.85187 5.02424 5.07408 5.23970 5.38202 5.42532 5.43400 5.49526 5.52984 5.54880 5.65855 5.69319 5.89839 5.93640 6.03016 6.04063 6.14727 6.21348 6.35770 6.38535 6.48253 6.60970 6.80262 7.33183 7.51846 7.61046 7.72118 8.14472 8.26916 8.29590 9.12399 9.73602 10.37274 11.31077 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.003757 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.453391 B = 7451.435814 C = 8363.341578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.128 3.872 11 C 0.082 3.918 12 H 0.061 0.939 13 O -0.569 6.569 14 C -0.105 4.105 15 H 0.086 0.914 16 C 0.133 3.867 17 N -0.718 5.718 18 C 0.562 3.438 19 O -0.548 6.548 20 C -0.190 4.190 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.094 4.094 25 C 0.141 3.859 26 H 0.254 0.746 27 H 0.109 0.891 28 H 0.023 0.977 29 H 0.377 0.623 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -16.780 1.553 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.021 3.979 12 H 0.079 0.921 13 O -0.374 6.374 14 C -0.124 4.124 15 H 0.104 0.896 16 C 0.009 3.991 17 N -0.368 5.368 18 C 0.350 3.650 19 O -0.427 6.427 20 C -0.193 4.193 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.131 4.131 25 C 0.015 3.985 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.041 0.959 29 H 0.224 0.776 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.236 0.764 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.790 -17.189 1.122 18.515 hybrid contribution 0.275 1.456 0.171 1.491 sum 7.065 -15.733 1.294 17.295 Atomic orbital electron populations 1.69751 1.04958 1.25072 1.57367 1.24803 0.95762 0.97836 1.02159 0.86114 0.78405 0.82798 0.77948 1.21065 1.21511 1.21142 1.19047 0.90512 0.82257 1.43538 0.90314 1.44378 1.01562 0.99792 1.87084 1.22584 0.85328 0.92561 0.99258 1.23303 0.82166 0.95444 0.96974 0.92104 1.86372 1.15736 1.58867 1.76416 1.22404 0.96204 0.94193 0.99603 0.89600 1.21434 0.88434 0.92313 0.96882 1.45950 1.35833 1.28607 1.26446 1.17980 0.82629 0.80278 0.84117 1.90783 1.60499 1.68665 1.22778 1.21886 0.98683 0.98997 0.99700 1.24021 0.93602 0.94012 0.98296 1.21475 0.97519 1.00821 0.94542 1.22459 1.00630 0.96261 0.96667 1.21317 0.98766 0.98787 0.94216 1.21359 0.93338 0.85529 0.98280 0.93559 0.87358 0.95942 0.77628 0.91155 0.91250 0.76364 0.84530 0.90349 0.89694 0.90793 0.90515 0.89940 0.90687 0.95828 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 10.11 55.49 0.56 -25.82 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.18 10.28 -15.05 -0.15 -6.34 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.12 3.41 -169.81 -0.58 -15.69 16 10 C 0.13 3.05 5.65 -2.35 -0.01 3.03 16 11 C 0.08 1.56 3.88 -24.58 -0.10 1.46 16 12 H 0.06 1.14 8.05 -51.94 -0.42 0.73 16 13 O -0.57 -9.88 13.47 -35.23 -0.47 -10.36 16 14 C -0.10 -1.84 2.75 -88.78 -0.24 -2.08 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.13 2.12 4.99 -4.04 -0.02 2.10 16 17 N -0.72 -10.09 5.39 -61.49 -0.33 -10.43 16 18 C 0.56 8.42 7.79 -12.67 -0.10 8.32 16 19 O -0.55 -10.18 16.77 5.26 0.09 -10.09 16 20 C -0.19 -2.19 6.09 -102.73 -0.63 -2.82 16 21 C -0.08 -0.80 10.43 -36.01 -0.38 -1.18 16 22 C -0.11 -0.76 6.80 -26.86 -0.18 -0.94 16 23 C -0.12 -0.85 7.17 -24.97 -0.18 -1.03 16 24 C -0.09 -0.82 6.04 -26.74 -0.16 -0.98 16 25 C 0.14 2.85 6.52 -3.06 -0.02 2.83 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.38 5.08 9.12 45.56 0.42 5.50 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.40 4.84 7.33 -40.82 -0.30 4.54 16 33 H 0.14 1.40 8.03 -52.48 -0.42 0.98 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -32.74 335.36 -8.58 -41.32 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.61 Total: 7.32 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.27 Total: 2.00 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.35 Total: -51.94 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.39 Total: -20.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.74 -8.58 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.036 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds