Wall clock time and date at job start Tue Mar 31 2020 02:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48502 * 109.47348 * 239.99644 * 3 2 1 5 5 H 1.48492 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46964 * 119.99954 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.08989 * 111.04037 * 279.00643 * 11 10 9 13 13 O 1.42904 * 111.00107 * 155.16655 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21619 * 119.99891 * 359.97438 * 18 17 16 20 20 C 1.47096 * 120.00040 * 179.97438 * 18 17 16 21 21 C 1.32611 * 124.62362 * 180.02562 * 20 18 17 22 22 C 1.51110 * 110.76365 * 180.02562 * 21 20 18 23 23 C 1.54574 * 104.83594 * 16.60184 * 22 21 20 24 24 C 1.51114 * 124.62043 * 359.72184 * 20 18 17 25 25 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 26 26 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 28 28 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 29 29 H 0.96704 * 113.99765 * 67.80908 * 13 11 10 30 30 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 31 31 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 32 32 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 33 33 H 1.08007 * 124.61762 * 0.02562 * 21 20 18 34 34 H 1.09007 * 110.36707 * 135.43915 * 22 21 20 35 35 H 1.08998 * 110.36290 * 257.64892 * 22 21 20 36 36 H 1.08999 * 110.98856 * 93.07642 * 23 22 21 37 37 H 1.09007 * 110.98095 * 216.83216 * 23 22 21 38 38 H 1.09000 * 110.36321 * 282.24283 * 24 20 18 39 39 H 1.09003 * 110.36252 * 44.56033 * 24 20 18 40 40 H 1.09002 * 109.88367 * 61.61048 * 25 9 7 41 41 H 1.09000 * 109.88319 * 300.59666 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -0.3530 -3.9010 -1.7006 13 8 -1.6553 -4.4652 -0.1754 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2309 -8.1254 -2.0588 20 6 3.8484 -8.5250 -0.4291 21 6 4.3920 -9.6033 -0.9771 22 6 5.5218 -10.1274 -0.1213 23 6 5.3201 -9.4548 1.2558 24 6 4.5437 -8.1739 0.8658 25 6 1.9316 -3.7276 -0.0005 26 1 -0.4849 0.8401 0.0004 27 1 -0.6042 -1.7636 -0.6122 28 1 -0.5315 -2.4935 1.0198 29 1 -2.4238 -3.9860 -0.5144 30 1 0.2606 -6.5853 -1.0394 31 1 1.4100 -5.5564 -1.9273 32 1 2.6402 -6.4002 0.4708 33 1 4.0710 -10.0465 -1.9082 34 1 5.4552 -11.2114 -0.0274 35 1 6.4838 -9.8426 -0.5472 36 1 4.7294 -10.0887 1.9171 37 1 6.2779 -9.2042 1.7118 38 1 5.2305 -7.3413 0.7139 39 1 3.8115 -7.9273 1.6348 40 1 2.5285 -3.8644 0.9012 41 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957964207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:21 Heat of formation + Delta-G solvation = -74.361372 kcal Electronic energy + Delta-G solvation = -21878.455499 eV Core-core repulsion = 18564.875216 eV Total energy + Delta-G solvation = -3313.580282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12888 -39.88145 -38.60334 -36.67378 -36.13225 -34.05387 -31.69844 -30.27544 -29.46889 -28.96808 -27.23203 -25.28250 -23.12845 -22.22261 -21.52259 -21.38283 -19.77597 -18.91222 -18.39387 -18.02662 -17.08651 -16.97429 -16.64546 -16.08081 -15.76908 -15.61503 -15.21728 -14.75992 -14.37243 -14.09677 -13.77603 -13.69333 -13.57616 -13.27023 -13.11632 -12.95623 -12.72258 -12.58207 -12.40010 -12.37401 -12.05230 -11.97826 -11.90108 -11.89002 -11.42798 -11.06919 -10.80645 -10.74561 -10.24230 -9.82090 -8.94057 -7.80821 -5.26107 0.37826 1.47374 1.50231 1.56603 2.15356 2.25472 2.47424 3.17981 3.29913 3.51629 3.58970 3.66533 3.73080 3.88800 4.07249 4.11193 4.23692 4.32956 4.39541 4.43516 4.57503 4.68573 4.81371 4.84148 4.85991 4.92195 4.94277 4.99675 5.19786 5.23096 5.32219 5.37999 5.40674 5.43011 5.46606 5.55531 5.71691 6.22855 6.50828 6.86519 7.05734 7.16245 7.72050 8.35494 9.21369 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.003757 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.453391 B = 7451.435814 C = 8363.341578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.133 3.867 11 C 0.097 3.903 12 H 0.067 0.933 13 O -0.569 6.569 14 C -0.088 4.088 15 H 0.093 0.907 16 C 0.146 3.854 17 N -0.710 5.710 18 C 0.558 3.442 19 O -0.592 6.592 20 C -0.216 4.216 21 C -0.068 4.068 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.092 4.092 25 C 0.140 3.860 26 H 0.248 0.752 27 H 0.079 0.921 28 H -0.006 1.006 29 H 0.394 0.606 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -18.121 2.275 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.008 3.992 11 C 0.036 3.964 12 H 0.084 0.916 13 O -0.376 6.376 14 C -0.107 4.107 15 H 0.111 0.889 16 C 0.022 3.978 17 N -0.361 5.361 18 C 0.348 3.652 19 O -0.475 6.475 20 C -0.219 4.219 21 C -0.088 4.088 22 C -0.140 4.140 23 C -0.155 4.155 24 C -0.129 4.129 25 C 0.015 3.985 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.012 0.988 29 H 0.244 0.756 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.250 0.750 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.567 -18.548 1.870 20.516 hybrid contribution -0.285 1.816 -0.076 1.839 sum 8.281 -16.732 1.794 18.756 Atomic orbital electron populations 1.69995 1.06243 1.25279 1.58325 1.25650 0.96665 1.01065 1.02415 0.85095 0.77116 0.78536 0.78235 1.20247 1.21983 1.20327 1.19446 0.91137 0.83480 1.43034 0.89736 1.44660 1.02300 1.01029 1.87091 1.22362 0.84842 0.94704 0.97317 1.22981 0.83551 0.92961 0.96901 0.91556 1.86345 1.15805 1.58815 1.76602 1.22232 0.94451 0.93777 1.00211 0.88882 1.21147 0.89089 0.91664 0.95936 1.45838 1.35235 1.28287 1.26754 1.18557 0.83013 0.80116 0.83511 1.90752 1.62154 1.69841 1.24763 1.21893 0.98647 0.99705 1.01639 1.24362 0.93603 0.92944 0.97908 1.21553 0.96614 1.01812 0.93999 1.22489 1.01274 0.95173 0.96593 1.21359 0.98865 0.99955 0.92735 1.21490 0.94219 0.84000 0.98756 0.94194 0.90310 0.98784 0.75609 0.91294 0.92344 0.75042 0.85343 0.88568 0.88262 0.90235 0.88756 0.89663 0.90324 0.94509 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.53 10.11 21.65 0.22 -55.31 16 2 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.98 44.82 29.55 68.60 2.03 46.85 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.24 -13.35 10.28 84.03 0.86 -12.49 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -31.58 3.41 -691.17 -2.35 -33.93 16 10 C 0.13 6.49 5.65 86.79 0.49 6.98 16 11 C 0.10 3.66 3.88 31.99 0.12 3.78 16 12 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 13 O -0.57 -19.15 13.47 -148.98 -2.01 -21.15 16 14 C -0.09 -2.98 2.75 -9.60 -0.03 -3.01 16 15 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 16 C 0.15 4.52 4.99 86.38 0.43 4.96 16 17 N -0.71 -19.24 5.39 -466.70 -2.52 -21.76 16 18 C 0.56 16.42 7.79 86.57 0.67 17.09 16 19 O -0.59 -22.15 16.77 -4.09 -0.07 -22.22 16 20 C -0.22 -4.70 6.09 -18.57 -0.11 -4.81 16 21 C -0.07 -1.27 10.43 24.66 0.26 -1.01 16 22 C -0.10 -1.14 6.80 30.51 0.21 -0.93 16 23 C -0.12 -1.24 7.17 31.74 0.23 -1.01 16 24 C -0.09 -1.40 6.04 30.59 0.18 -1.21 16 25 C 0.14 5.56 6.52 86.73 0.57 6.12 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.08 4.31 5.88 -2.39 -0.01 4.29 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.39 10.24 9.12 -74.05 -0.68 9.57 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.41 9.29 7.33 -92.71 -0.68 8.61 16 33 H 0.13 2.55 8.03 -2.91 -0.02 2.52 16 34 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.11 7.82 -2.39 -0.02 1.09 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 Total: -1.00 -71.37 335.36 -0.66 -72.03 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.32 Total: 24.23 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 4.35 Total: 11.27 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.65 Total: -111.00 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -2.08 Total: -43.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.37 -0.66 -72.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.333 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds