Wall clock time and date at job start Tue Mar 31 2020 02:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21610 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.47107 * 119.99752 * 180.02562 * 15 14 13 18 18 C 1.32612 * 124.61941 * 180.02562 * 17 15 14 19 19 C 1.51112 * 110.76118 * 180.02562 * 18 17 15 20 20 C 1.54582 * 104.83930 * 16.59286 * 19 18 17 21 21 C 1.51104 * 124.62086 * 359.71928 * 17 15 14 22 22 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 23 23 H 1.09000 * 111.00609 * 277.39270 * 22 11 10 24 24 O 1.42894 * 111.00227 * 153.57846 * 22 11 10 25 25 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 26 26 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 28 28 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 29 29 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 30 30 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 31 31 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 32 32 H 1.08001 * 124.62211 * 0.02562 * 18 17 15 33 33 H 1.09000 * 110.36871 * 135.43656 * 19 18 17 34 34 H 1.09006 * 110.36109 * 257.75880 * 19 18 17 35 35 H 1.08996 * 110.98142 * 93.07394 * 20 19 18 36 36 H 1.08995 * 110.98109 * 216.83935 * 20 19 18 37 37 H 1.08999 * 110.36901 * 282.24539 * 21 17 15 38 38 H 1.09002 * 110.37005 * 44.56241 * 21 17 15 39 39 H 0.96701 * 113.99984 * 180.02562 * 24 22 11 40 40 H 1.08993 * 110.36934 * 85.24599 * 25 9 7 41 41 H 1.08996 * 110.36696 * 322.91899 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1778 1.8710 17 6 3.5731 -8.7003 -0.2126 18 6 4.2102 -9.8082 0.1415 19 6 4.9295 -10.4139 -1.0414 20 6 4.9880 -9.2811 -2.0916 21 6 3.7719 -8.4150 -1.6831 22 6 -0.1545 -3.9065 1.2840 23 1 0.2102 -3.8796 2.3109 24 8 -1.4893 -4.4137 1.2305 25 6 -0.0654 -2.5070 0.6256 26 1 -0.4850 0.8401 -0.0004 27 1 2.7569 -3.8625 0.6811 28 1 2.2077 -3.8652 -1.0180 29 1 2.0088 -5.5604 1.9553 30 1 0.5600 -6.5190 1.5675 31 1 2.2513 -6.5083 -0.6942 32 1 4.2143 -10.2214 1.1394 33 1 5.9363 -10.7200 -0.7571 34 1 4.3694 -11.2640 -1.4312 35 1 5.9184 -8.7195 -2.0084 36 1 4.8617 -9.6764 -3.0994 37 1 2.8872 -8.7064 -2.2491 38 1 3.9916 -7.3587 -1.8383 39 1 -2.1177 -3.9259 1.7802 40 1 -0.7305 -2.4503 -0.2360 41 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957964208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:24 Heat of formation + Delta-G solvation = -52.361144 kcal Electronic energy + Delta-G solvation = -21854.608815 eV Core-core repulsion = 18541.982534 eV Total energy + Delta-G solvation = -3312.626281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.02541 -38.45304 -37.65992 -35.18444 -34.62755 -32.27221 -30.23860 -29.29038 -28.51613 -27.49618 -25.54733 -23.67838 -22.00961 -20.95094 -20.41453 -19.94245 -18.63938 -17.32673 -17.02850 -16.64961 -16.00959 -15.60157 -15.21943 -14.89765 -14.43146 -14.03133 -13.80600 -13.08611 -13.03734 -12.92952 -12.82475 -12.45967 -12.19804 -11.94456 -11.88565 -11.66327 -11.49679 -11.41000 -11.18857 -10.99905 -10.81456 -10.64122 -10.12466 -10.02092 -9.85310 -9.72815 -9.22213 -9.18982 -8.87055 -8.65929 -6.89292 -5.81650 -3.15582 1.27930 3.28299 3.31786 3.35725 3.41760 3.43828 4.27227 4.33217 4.41259 4.67415 4.72558 4.84797 5.01659 5.06692 5.21061 5.37652 5.41383 5.42397 5.48217 5.53863 5.55213 5.65423 5.69566 5.88848 5.90851 6.01005 6.02368 6.13530 6.20808 6.34304 6.36050 6.49433 6.60326 6.80325 7.29744 7.47171 7.60308 7.68577 8.10934 8.20011 8.28887 9.10761 9.72737 10.38677 11.31076 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.003713 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.236472 B = 7538.637979 C = 8419.761141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.104 4.104 12 H 0.087 0.913 13 C 0.133 3.867 14 N -0.718 5.718 15 C 0.562 3.438 16 O -0.548 6.548 17 C -0.190 4.190 18 C -0.080 4.080 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.094 4.094 22 C 0.080 3.920 23 H 0.061 0.939 24 O -0.568 6.568 25 C 0.149 3.851 26 H 0.254 0.746 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.402 0.598 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.377 0.623 40 H 0.037 0.963 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -17.355 -2.501 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.015 3.985 11 C -0.123 4.123 12 H 0.105 0.895 13 C 0.009 3.991 14 N -0.368 5.368 15 C 0.350 3.650 16 O -0.427 6.427 17 C -0.193 4.193 18 C -0.099 4.099 19 C -0.144 4.144 20 C -0.160 4.160 21 C -0.131 4.131 22 C 0.019 3.981 23 H 0.079 0.921 24 O -0.372 6.372 25 C 0.024 3.976 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.223 0.777 40 H 0.055 0.945 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.631 -17.745 -2.089 18.734 hybrid contribution 0.152 1.506 -0.119 1.518 sum 5.782 -16.239 -2.208 17.378 Atomic orbital electron populations 1.69953 1.05011 1.25322 1.56167 1.24846 0.95660 0.97936 1.01856 0.86106 0.78775 0.83317 0.77570 1.21531 1.21555 1.20522 1.19030 0.91195 0.82614 1.43201 0.90433 1.44299 1.09194 0.99887 1.79349 1.21389 0.93801 0.85476 0.97833 1.22386 0.96682 0.94118 0.99108 0.89478 1.21438 0.94487 0.90885 0.92278 1.45946 1.51546 1.25517 1.13818 1.17977 0.79104 0.80632 0.87274 1.90780 1.62594 1.71872 1.17483 1.21887 1.02635 0.98557 0.96189 1.24022 0.93059 0.93616 0.99223 1.21479 1.00595 0.98695 0.93588 1.22463 0.98365 0.96407 0.98808 1.21314 0.98860 1.01139 0.91790 1.23279 0.81430 0.95690 0.97655 0.92140 1.86384 1.19437 1.59172 1.72242 1.22012 0.86593 0.91231 0.97782 0.93613 0.95306 0.95695 0.91207 0.91150 0.76356 0.84534 0.90307 0.89750 0.90702 0.90544 0.90110 0.90518 0.77657 0.94529 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.68 55.49 0.59 -25.89 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 N -0.60 -15.06 3.39 -170.07 -0.58 -15.64 16 10 C 0.14 2.84 6.75 -3.06 -0.02 2.82 16 11 C -0.10 -1.80 2.70 -88.79 -0.24 -2.04 16 12 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 13 C 0.13 2.09 5.02 -4.05 -0.02 2.07 16 14 N -0.72 -9.97 5.46 -61.50 -0.34 -10.31 16 15 C 0.56 8.34 7.79 -12.66 -0.10 8.24 16 16 O -0.55 -10.09 16.77 5.27 0.09 -10.01 16 17 C -0.19 -2.17 6.09 -102.73 -0.63 -2.80 16 18 C -0.08 -0.80 10.43 -36.01 -0.38 -1.17 16 19 C -0.11 -0.75 6.80 -26.85 -0.18 -0.93 16 20 C -0.12 -0.86 7.17 -24.96 -0.18 -1.04 16 21 C -0.09 -0.81 6.04 -26.75 -0.16 -0.97 16 22 C 0.08 1.50 3.88 -24.58 -0.10 1.40 16 23 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 24 O -0.57 -9.72 13.47 -35.23 -0.47 -10.20 16 25 C 0.15 3.53 5.16 -2.52 -0.01 3.52 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.40 4.77 7.47 -40.82 -0.30 4.46 16 32 H 0.14 1.39 8.03 -52.49 -0.42 0.97 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.65 7.82 -51.93 -0.41 0.24 16 39 H 0.38 4.97 9.12 45.56 0.42 5.38 16 40 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.07 1.85 6.93 -51.93 -0.36 1.49 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -33.07 336.52 -8.58 -41.65 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.65 Total: 6.33 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.26 Total: 2.29 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.32 Total: -51.84 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.39 Total: -20.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.07 -8.58 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.712 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds