Wall clock time and date at job start Tue Mar 31 2020 02:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21610 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.47107 * 119.99752 * 180.02562 * 15 14 13 18 18 C 1.32612 * 124.61941 * 180.02562 * 17 15 14 19 19 C 1.51112 * 110.76118 * 180.02562 * 18 17 15 20 20 C 1.54582 * 104.83930 * 16.59286 * 19 18 17 21 21 C 1.51104 * 124.62086 * 359.71928 * 17 15 14 22 22 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 23 23 H 1.09000 * 111.00609 * 277.39270 * 22 11 10 24 24 O 1.42894 * 111.00227 * 153.57846 * 22 11 10 25 25 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 26 26 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 28 28 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 29 29 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 30 30 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 31 31 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 32 32 H 1.08001 * 124.62211 * 0.02562 * 18 17 15 33 33 H 1.09000 * 110.36871 * 135.43656 * 19 18 17 34 34 H 1.09006 * 110.36109 * 257.75880 * 19 18 17 35 35 H 1.08996 * 110.98142 * 93.07394 * 20 19 18 36 36 H 1.08995 * 110.98109 * 216.83935 * 20 19 18 37 37 H 1.08999 * 110.36901 * 282.24539 * 21 17 15 38 38 H 1.09002 * 110.37005 * 44.56241 * 21 17 15 39 39 H 0.96701 * 113.99984 * 180.02562 * 24 22 11 40 40 H 1.08993 * 110.36934 * 85.24599 * 25 9 7 41 41 H 1.08996 * 110.36696 * 322.91899 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1778 1.8710 17 6 3.5731 -8.7003 -0.2126 18 6 4.2102 -9.8082 0.1415 19 6 4.9295 -10.4139 -1.0414 20 6 4.9880 -9.2811 -2.0916 21 6 3.7719 -8.4150 -1.6831 22 6 -0.1545 -3.9065 1.2840 23 1 0.2102 -3.8796 2.3109 24 8 -1.4893 -4.4137 1.2305 25 6 -0.0654 -2.5070 0.6256 26 1 -0.4850 0.8401 -0.0004 27 1 2.7569 -3.8625 0.6811 28 1 2.2077 -3.8652 -1.0180 29 1 2.0088 -5.5604 1.9553 30 1 0.5600 -6.5190 1.5675 31 1 2.2513 -6.5083 -0.6942 32 1 4.2143 -10.2214 1.1394 33 1 5.9363 -10.7200 -0.7571 34 1 4.3694 -11.2640 -1.4312 35 1 5.9184 -8.7195 -2.0084 36 1 4.8617 -9.6764 -3.0994 37 1 2.8872 -8.7064 -2.2491 38 1 3.9916 -7.3587 -1.8383 39 1 -2.1177 -3.9259 1.7802 40 1 -0.7305 -2.4503 -0.2360 41 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957964208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:23 Heat of formation + Delta-G solvation = -76.789318 kcal Electronic energy + Delta-G solvation = -21855.668100 eV Core-core repulsion = 18541.982534 eV Total energy + Delta-G solvation = -3313.685566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12295 -39.90497 -38.60276 -36.68274 -36.12661 -34.06586 -31.71954 -30.27133 -29.46824 -28.99418 -27.23215 -25.27092 -23.10710 -22.26204 -21.51872 -21.43447 -19.75471 -18.87848 -18.40092 -18.02608 -17.12955 -16.90788 -16.57875 -16.16993 -15.82769 -15.58108 -15.21919 -14.75270 -14.39517 -14.14428 -13.77613 -13.66480 -13.56476 -13.35089 -13.07275 -12.94653 -12.78104 -12.57875 -12.40815 -12.34150 -12.04610 -11.97401 -11.94933 -11.86569 -11.50334 -11.05565 -10.82677 -10.70334 -10.23418 -9.81558 -8.91715 -7.91307 -5.27526 0.38365 1.46446 1.47639 1.57437 2.16165 2.25931 2.46795 3.16108 3.28127 3.52227 3.59621 3.66464 3.71344 3.87688 4.06466 4.11397 4.23819 4.33243 4.38901 4.42998 4.55819 4.69714 4.82066 4.83726 4.86537 4.92431 4.94123 4.99761 5.19889 5.22834 5.31408 5.36488 5.38844 5.43850 5.46737 5.55995 5.63965 6.14360 6.51409 6.85736 7.03531 7.16849 7.70229 8.35648 9.20182 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021513 B = 0.003713 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.236472 B = 7538.637979 C = 8419.761141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.140 3.860 11 C -0.086 4.086 12 H 0.092 0.908 13 C 0.146 3.854 14 N -0.711 5.711 15 C 0.558 3.442 16 O -0.592 6.592 17 C -0.216 4.216 18 C -0.069 4.069 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.092 4.092 22 C 0.096 3.904 23 H 0.071 0.929 24 O -0.568 6.568 25 C 0.157 3.843 26 H 0.249 0.751 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.394 0.606 40 H 0.004 0.996 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 -18.831 -3.411 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.015 3.985 11 C -0.106 4.106 12 H 0.111 0.889 13 C 0.022 3.978 14 N -0.361 5.361 15 C 0.348 3.652 16 O -0.475 6.475 17 C -0.219 4.219 18 C -0.088 4.088 19 C -0.139 4.139 20 C -0.157 4.157 21 C -0.129 4.129 22 C 0.036 3.964 23 H 0.089 0.911 24 O -0.375 6.375 25 C 0.031 3.969 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.244 0.756 40 H 0.022 0.978 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.999 -19.239 -3.024 20.694 hybrid contribution -0.277 1.903 0.181 1.932 sum 6.722 -17.335 -2.844 18.809 Atomic orbital electron populations 1.70146 1.06393 1.25632 1.57344 1.25677 0.96521 1.01176 1.02133 0.85073 0.77840 0.79031 0.77407 1.21222 1.21929 1.19338 1.19416 0.91743 0.83885 1.42561 0.89990 1.44586 1.09745 1.01129 1.79516 1.21517 0.94644 0.83918 0.98389 1.22211 0.95439 0.93751 0.99162 0.88925 1.21155 0.94420 0.90266 0.92006 1.45841 1.51035 1.25146 1.14109 1.18542 0.78772 0.80638 0.87214 1.90750 1.64310 1.72951 1.19469 1.21895 1.03613 0.99046 0.97323 1.24360 0.91650 0.92801 1.00020 1.21553 1.01197 0.99022 0.92151 1.22495 0.97513 0.95942 0.99711 1.21355 1.00124 1.01587 0.89823 1.22969 0.82711 0.92909 0.97845 0.91126 1.86357 1.19031 1.59152 1.72949 1.21798 0.85632 0.93435 0.96009 0.94161 0.94850 0.94796 0.92099 0.91280 0.75050 0.85326 0.88718 0.88039 0.90576 0.88620 0.89274 0.90614 0.75584 0.97804 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.03 10.68 21.65 0.23 -55.79 16 2 C -0.06 -3.44 5.40 84.86 0.46 -2.98 16 3 Si 0.98 44.97 29.56 68.60 2.03 47.00 16 4 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.25 -13.68 10.24 84.03 0.86 -12.82 16 8 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 9 N -0.62 -31.51 3.39 -691.99 -2.35 -33.86 16 10 C 0.14 5.55 6.75 86.73 0.59 6.14 16 11 C -0.09 -2.91 2.70 -9.61 -0.03 -2.94 16 12 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 13 C 0.15 4.43 5.02 86.38 0.43 4.87 16 14 N -0.71 -18.97 5.46 -466.73 -2.55 -21.52 16 15 C 0.56 16.23 7.79 86.57 0.67 16.90 16 16 O -0.59 -21.89 16.77 -4.06 -0.07 -21.96 16 17 C -0.22 -4.65 6.09 -18.57 -0.11 -4.76 16 18 C -0.07 -1.26 10.43 24.66 0.26 -1.00 16 19 C -0.10 -1.12 6.80 30.52 0.21 -0.91 16 20 C -0.12 -1.28 7.17 31.74 0.23 -1.05 16 21 C -0.09 -1.38 6.04 30.58 0.18 -1.19 16 22 C 0.10 3.57 3.88 31.99 0.12 3.69 16 23 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 24 O -0.57 -18.80 13.47 -148.98 -2.01 -20.81 16 25 C 0.16 7.60 5.16 86.86 0.45 8.05 16 26 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 27 H 0.03 1.31 7.68 -2.39 -0.02 1.29 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 30 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.41 9.16 7.47 -92.71 -0.69 8.47 16 32 H 0.13 2.52 8.03 -2.91 -0.02 2.50 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.13 7.82 -2.39 -0.02 1.11 16 39 H 0.39 9.97 9.12 -74.06 -0.68 9.29 16 40 H 0.00 0.21 8.07 -2.39 -0.02 0.19 16 41 H 0.04 2.20 6.93 -2.39 -0.02 2.18 16 Total: -1.00 -72.24 336.52 -0.72 -72.96 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.33 Total: 22.00 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 4.32 Total: 11.97 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.67 Total: -111.18 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.07 Total: -42.76 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.24 -0.72 -72.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957964208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.828 kcal (2) G-P(sol) polarization free energy of solvation -72.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds