Wall clock time and date at job start Tue Mar 31 2020 01:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99758 * 2 1 4 4 H 1.08001 * 119.99448 * 203.48844 * 3 2 1 5 5 C 1.38813 * 120.00080 * 23.48904 * 3 2 1 6 6 N 1.31614 * 119.99711 * 15.10140 * 5 3 2 7 7 Si 1.86800 * 119.99763 * 195.10137 * 5 3 2 8 8 H 1.48501 * 109.46910 * 90.00262 * 7 5 3 9 9 H 1.48502 * 109.46808 * 210.00097 * 7 5 3 10 10 H 1.48497 * 109.47044 * 329.99881 * 7 5 3 11 11 C 1.46503 * 119.99988 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.63883 * 178.31452 * 11 2 1 13 13 C 1.55160 * 110.71629 * 301.45016 * 11 2 1 14 14 C 1.54917 * 101.57718 * 154.04779 * 13 11 2 15 15 N 1.47421 * 104.83227 * 322.98745 * 14 13 11 16 16 C 1.34778 * 125.65059 * 204.09282 * 15 14 13 17 17 O 1.21277 * 119.99780 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99594 * 0.03108 * 16 15 14 19 19 N 1.46506 * 109.47026 * 179.97438 * 18 16 15 20 20 C 1.34602 * 126.43829 * 124.99403 * 19 18 16 21 21 N 1.31071 * 106.67462 * 179.97438 * 20 19 18 22 22 N 1.28839 * 107.99533 * 0.02562 * 21 20 19 23 23 N 1.28742 * 109.39338 * 359.97438 * 22 21 20 24 24 C 1.47025 * 108.70064 * 24.36072 * 15 14 13 25 25 H 1.09003 * 109.47025 * 275.20756 * 1 2 3 26 26 H 1.08996 * 109.47420 * 35.21285 * 1 2 3 27 27 H 1.09002 * 109.47086 * 155.21310 * 1 2 3 28 28 H 0.97008 * 119.99869 * 179.97438 * 6 5 3 29 29 H 1.08990 * 111.00469 * 35.97029 * 13 11 2 30 30 H 1.09004 * 111.03780 * 272.13015 * 13 11 2 31 31 H 1.09002 * 110.35852 * 204.15064 * 14 13 11 32 32 H 1.08992 * 110.46056 * 81.87793 * 14 13 11 33 33 H 1.09000 * 109.47881 * 59.99803 * 18 16 15 34 34 H 1.09007 * 109.47282 * 299.99481 * 18 16 15 35 35 H 1.07996 * 126.65597 * 0.24532 * 20 19 18 36 36 H 1.09003 * 109.88413 * 118.13434 * 24 15 14 37 37 H 1.09002 * 109.88166 * 239.29242 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1625 1.2246 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4426 2.2523 1.1979 7 14 2.2839 4.0109 0.1037 8 1 1.7111 4.5335 -1.1628 9 1 1.9741 4.9498 1.2117 10 1 3.7564 3.8790 -0.0362 11 6 2.1975 -1.2688 -0.0006 12 1 3.2727 -1.0917 -0.0305 13 6 1.8162 -2.1232 1.2371 14 6 2.1054 -3.5569 0.7262 15 7 1.6993 -3.5416 -0.6909 16 6 1.3360 -4.6183 -1.4156 17 8 1.0201 -4.4875 -2.5792 18 6 1.3222 -5.9845 -0.7799 19 7 0.8945 -6.9784 -1.7677 20 6 1.5635 -8.0907 -2.1241 21 7 0.8338 -8.6945 -3.0301 22 7 -0.2277 -7.9896 -3.2207 23 7 -0.1943 -6.9520 -2.4592 24 6 1.7626 -2.1581 -1.1845 25 1 -0.3633 0.0933 1.0235 26 1 -0.3634 0.8396 -0.5925 27 1 -0.3633 -0.9330 -0.4308 28 1 0.0181 3.0575 1.5331 29 1 0.7619 -2.0022 1.4856 30 1 2.4474 -1.8782 2.0914 31 1 1.5140 -4.2842 1.2825 32 1 3.1674 -3.7857 0.8142 33 1 0.6289 -5.9871 0.0612 34 1 2.3235 -6.2309 -0.4263 35 1 2.5146 -8.4233 -1.7354 36 1 2.4909 -2.0856 -1.9923 37 1 0.7804 -1.8457 -1.5391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971043633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:01 Heat of formation + Delta-G solvation = 129.078819 kcal Electronic energy + Delta-G solvation = -21787.064997 eV Core-core repulsion = 18411.058952 eV Total energy + Delta-G solvation = -3376.006046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.31522 -40.15616 -37.82234 -35.56858 -34.98986 -32.61519 -31.90773 -30.19700 -29.55992 -27.74194 -26.14676 -24.29540 -23.97584 -23.03807 -22.49807 -19.86347 -19.35210 -18.07791 -17.60211 -17.17597 -16.64885 -16.32622 -16.06023 -15.29131 -14.97137 -14.44216 -13.73810 -13.58097 -13.49364 -13.10936 -12.70127 -12.59860 -12.51202 -12.25959 -11.95409 -11.57806 -11.34350 -11.28589 -11.09855 -10.89083 -10.72829 -10.58257 -10.56197 -10.37175 -10.06870 -9.99949 -9.92635 -8.69697 -8.64170 -6.93012 -5.86640 -3.34774 1.06487 1.60987 2.13308 2.29047 2.79332 3.31289 3.38406 3.39016 3.82560 3.98450 4.08081 4.37273 4.38411 4.58525 4.78177 5.06346 5.13081 5.22279 5.30572 5.38521 5.49684 5.54419 5.71999 5.80862 5.84037 6.08935 6.18696 6.29925 6.46488 6.66829 6.70663 7.22148 7.36462 7.59000 7.68486 7.88349 8.24679 8.46746 9.07507 9.70058 10.18282 11.17933 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.046873 B = 0.003305 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.212716 B = 8470.738261 C = 8605.786221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.266 4.266 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.901 5.901 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.092 3.908 15 N -0.605 5.605 16 C 0.511 3.489 17 O -0.517 6.517 18 C 0.099 3.901 19 N -0.299 5.299 20 C 0.157 3.843 21 N -0.309 5.309 22 N -0.081 5.081 23 N -0.060 5.060 24 C 0.087 3.913 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.003 0.997 28 H 0.254 0.746 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.235 0.765 36 H 0.064 0.936 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -16.504 2.934 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.304 5.304 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.545 5.545 7 Si 0.736 3.264 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.031 4.031 15 N -0.339 5.339 16 C 0.295 3.705 17 O -0.392 6.392 18 C -0.026 4.026 19 N -0.101 5.101 20 C -0.141 4.141 21 N -0.156 5.156 22 N -0.075 5.075 23 N -0.046 5.046 24 C -0.037 4.037 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.082 0.918 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.324 -16.452 1.484 17.075 hybrid contribution 1.195 1.203 0.708 1.838 sum 5.519 -15.248 2.192 16.364 Atomic orbital electron populations 1.20820 0.82456 0.95769 0.99727 1.43855 1.01838 0.99845 1.84888 1.19200 0.98941 0.85282 1.36113 0.91182 1.25023 0.98001 0.98656 0.97484 1.70067 1.20972 1.27587 1.35863 0.86236 0.78712 0.83864 0.77582 1.21347 1.21696 1.20380 1.21292 0.96495 0.86042 0.89898 0.90155 1.23408 1.03207 0.91993 1.00517 1.22533 0.99695 1.00253 0.80647 1.48426 1.65287 1.07655 1.12547 1.19659 0.79243 0.84790 0.86771 1.90849 1.47256 1.85065 1.16047 1.22019 1.04873 0.86138 0.89598 1.48196 1.14525 1.18268 1.29086 1.27714 1.02328 0.86512 0.97559 1.74968 1.01522 1.24879 1.14259 1.78680 1.14489 0.98323 1.16035 1.79055 1.04582 1.17282 1.03692 1.22876 1.02804 0.78740 0.99262 0.94668 0.94057 0.97817 0.93557 0.90399 0.90009 0.91158 0.90966 0.84765 0.84043 0.74904 0.91757 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.60 7.70 59.85 0.46 4.07 16 2 N -0.58 -13.32 2.93 -171.38 -0.50 -13.83 16 3 C -0.27 -6.81 9.59 -15.06 -0.14 -6.95 16 4 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 5 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 6 N -0.90 -24.94 10.86 55.49 0.60 -24.34 16 7 Si 0.91 20.88 29.58 -169.99 -5.03 15.85 16 8 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.17 3.03 3.42 -66.09 -0.23 2.81 16 12 H 0.08 1.38 7.93 -51.92 -0.41 0.97 16 13 C -0.15 -2.10 6.65 -24.58 -0.16 -2.27 16 14 C 0.09 0.86 6.69 -2.53 -0.02 0.85 16 15 N -0.60 -7.67 3.33 -170.52 -0.57 -8.24 16 16 C 0.51 6.56 7.87 -10.99 -0.09 6.47 16 17 O -0.52 -9.38 16.03 5.56 0.09 -9.29 16 18 C 0.10 0.72 5.97 -5.19 -0.03 0.69 16 19 N -0.30 -3.19 3.19 -63.73 -0.20 -3.39 16 20 C 0.16 1.38 12.79 -90.39 -1.16 0.22 16 21 N -0.31 -4.08 12.36 29.59 0.37 -3.71 16 22 N -0.08 -1.28 13.43 60.35 0.81 -0.47 16 23 N -0.06 -0.90 12.29 60.35 0.74 -0.16 16 24 C 0.09 1.42 6.41 -3.06 -0.02 1.40 16 25 H 0.04 0.87 7.32 -51.93 -0.38 0.49 16 26 H 0.04 1.04 7.43 -51.93 -0.39 0.66 16 27 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 28 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 29 H 0.08 1.23 7.28 -51.93 -0.38 0.85 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.45 7.48 -51.93 -0.39 0.06 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.13 0.66 7.85 -51.93 -0.41 0.25 16 34 H 0.14 0.31 8.08 -51.92 -0.42 -0.11 16 35 H 0.23 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.46 6.15 -51.93 -0.32 1.14 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -35.36 311.93 -5.12 -40.48 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.66 Total: -5.01 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.47 Total: 7.40 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 1.25 Total: -54.14 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.36 -5.12 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971043633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.560 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds