Wall clock time and date at job start Tue Mar 31 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 119.99758 * 2 1 4 4 H 1.08001 * 119.99448 * 203.48844 * 3 2 1 5 5 C 1.38813 * 120.00080 * 23.48904 * 3 2 1 6 6 N 1.31614 * 119.99711 * 15.10140 * 5 3 2 7 7 Si 1.86800 * 119.99763 * 195.10137 * 5 3 2 8 8 H 1.48501 * 109.46910 * 90.00262 * 7 5 3 9 9 H 1.48502 * 109.46808 * 210.00097 * 7 5 3 10 10 H 1.48497 * 109.47044 * 329.99881 * 7 5 3 11 11 C 1.46503 * 119.99988 * 180.02562 * 2 1 3 12 12 H 1.09008 * 110.63883 * 178.31452 * 11 2 1 13 13 C 1.55160 * 110.71629 * 301.45016 * 11 2 1 14 14 C 1.54917 * 101.57718 * 154.04779 * 13 11 2 15 15 N 1.47421 * 104.83227 * 322.98745 * 14 13 11 16 16 C 1.34778 * 125.65059 * 204.09282 * 15 14 13 17 17 O 1.21277 * 119.99780 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99594 * 0.03108 * 16 15 14 19 19 N 1.46506 * 109.47026 * 179.97438 * 18 16 15 20 20 C 1.34602 * 126.43829 * 124.99403 * 19 18 16 21 21 N 1.31071 * 106.67462 * 179.97438 * 20 19 18 22 22 N 1.28839 * 107.99533 * 0.02562 * 21 20 19 23 23 N 1.28742 * 109.39338 * 359.97438 * 22 21 20 24 24 C 1.47025 * 108.70064 * 24.36072 * 15 14 13 25 25 H 1.09003 * 109.47025 * 275.20756 * 1 2 3 26 26 H 1.08996 * 109.47420 * 35.21285 * 1 2 3 27 27 H 1.09002 * 109.47086 * 155.21310 * 1 2 3 28 28 H 0.97008 * 119.99869 * 179.97438 * 6 5 3 29 29 H 1.08990 * 111.00469 * 35.97029 * 13 11 2 30 30 H 1.09004 * 111.03780 * 272.13015 * 13 11 2 31 31 H 1.09002 * 110.35852 * 204.15064 * 14 13 11 32 32 H 1.08992 * 110.46056 * 81.87793 * 14 13 11 33 33 H 1.09000 * 109.47881 * 59.99803 * 18 16 15 34 34 H 1.09007 * 109.47282 * 299.99481 * 18 16 15 35 35 H 1.07996 * 126.65597 * 0.24532 * 20 19 18 36 36 H 1.09003 * 109.88413 * 118.13434 * 24 15 14 37 37 H 1.09002 * 109.88166 * 239.29242 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1625 1.2246 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4426 2.2523 1.1979 7 14 2.2839 4.0109 0.1037 8 1 1.7111 4.5335 -1.1628 9 1 1.9741 4.9498 1.2117 10 1 3.7564 3.8790 -0.0362 11 6 2.1975 -1.2688 -0.0006 12 1 3.2727 -1.0917 -0.0305 13 6 1.8162 -2.1232 1.2371 14 6 2.1054 -3.5569 0.7262 15 7 1.6993 -3.5416 -0.6909 16 6 1.3360 -4.6183 -1.4156 17 8 1.0201 -4.4875 -2.5792 18 6 1.3222 -5.9845 -0.7799 19 7 0.8945 -6.9784 -1.7677 20 6 1.5635 -8.0907 -2.1241 21 7 0.8338 -8.6945 -3.0301 22 7 -0.2277 -7.9896 -3.2207 23 7 -0.1943 -6.9520 -2.4592 24 6 1.7626 -2.1581 -1.1845 25 1 -0.3633 0.0933 1.0235 26 1 -0.3634 0.8396 -0.5925 27 1 -0.3633 -0.9330 -0.4308 28 1 0.0181 3.0575 1.5331 29 1 0.7619 -2.0022 1.4856 30 1 2.4474 -1.8782 2.0914 31 1 1.5140 -4.2842 1.2825 32 1 3.1674 -3.7857 0.8142 33 1 0.6289 -5.9871 0.0612 34 1 2.3235 -6.2309 -0.4263 35 1 2.5146 -8.4233 -1.7354 36 1 2.4909 -2.0856 -1.9923 37 1 0.7804 -1.8457 -1.5391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971043633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:00 Heat of formation + Delta-G solvation = 102.520108 kcal Electronic energy + Delta-G solvation = -21788.216669 eV Core-core repulsion = 18411.058952 eV Total energy + Delta-G solvation = -3377.157718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.15602 -41.20995 -39.06922 -36.61505 -36.39952 -33.61939 -33.39014 -31.56536 -30.47169 -28.92890 -28.07721 -25.55813 -24.81417 -24.22408 -23.67336 -21.05453 -20.56259 -18.99190 -18.80755 -18.46284 -17.58670 -17.55569 -16.93363 -16.59000 -16.15071 -15.78209 -15.12601 -14.99790 -14.58132 -14.39045 -14.13998 -13.79929 -13.50823 -13.21546 -13.12249 -12.97265 -12.87180 -12.58706 -12.38620 -12.29250 -12.18303 -12.11345 -12.04850 -11.83202 -11.47887 -11.44759 -11.01943 -10.65666 -9.73104 -8.82073 -7.85803 -5.34600 0.27922 0.97033 1.27029 1.38215 1.46413 1.49531 1.56520 1.87373 2.49965 3.10525 3.28171 3.47212 3.52405 3.57632 3.83580 3.97733 4.01470 4.04280 4.29034 4.37029 4.40040 4.49074 4.67393 4.72357 4.76680 4.92054 5.01881 5.08085 5.21754 5.27447 5.34287 5.43145 5.63944 5.66177 6.29889 6.41790 6.93062 7.11365 7.59077 7.82476 8.26935 9.17390 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.046873 B = 0.003305 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.212716 B = 8470.738261 C = 8605.786221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.075 0.925 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.293 1.293 9 H -0.295 1.295 10 H -0.264 1.264 11 C 0.164 3.836 12 H 0.086 0.914 13 C -0.146 4.146 14 C 0.101 3.899 15 N -0.603 5.603 16 C 0.506 3.494 17 O -0.582 6.582 18 C 0.104 3.896 19 N -0.300 5.300 20 C 0.187 3.813 21 N -0.348 5.348 22 N -0.120 5.120 23 N -0.102 5.102 24 C 0.099 3.901 25 H 0.013 0.987 26 H 0.006 0.994 27 H 0.023 0.977 28 H 0.248 0.752 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.210 0.790 35 H 0.300 0.700 36 H 0.055 0.945 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -18.956 4.780 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.093 0.907 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.794 3.206 8 H -0.220 1.220 9 H -0.222 1.222 10 H -0.189 1.189 11 C 0.055 3.945 12 H 0.104 0.896 13 C -0.186 4.186 14 C -0.020 4.020 15 N -0.337 5.337 16 C 0.293 3.707 17 O -0.461 6.461 18 C -0.019 4.019 19 N -0.102 5.102 20 C -0.111 4.111 21 N -0.195 5.195 22 N -0.114 5.114 23 N -0.089 5.089 24 C -0.026 4.026 25 H 0.032 0.968 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.185 0.815 34 H 0.227 0.773 35 H 0.315 0.685 36 H 0.074 0.926 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.114 -18.951 3.363 20.519 hybrid contribution 0.435 1.924 0.127 1.977 sum 7.549 -17.026 3.490 18.949 Atomic orbital electron populations 1.20437 0.83263 0.95168 0.97754 1.44011 1.01710 1.01293 1.85370 1.19550 0.99044 0.86578 1.34598 0.90703 1.25729 0.98770 1.01726 0.98120 1.70210 1.22453 1.27743 1.37503 0.85301 0.78661 0.80077 0.76604 1.22021 1.22185 1.18876 1.21519 0.96171 0.84572 0.92192 0.89633 1.23236 1.01912 0.94535 0.98890 1.22773 1.02995 0.97896 0.78303 1.48447 1.65224 1.06058 1.13924 1.20670 0.77337 0.86605 0.86057 1.90839 1.49828 1.86265 1.19160 1.22512 1.09426 0.81529 0.88400 1.48444 1.13573 1.19234 1.28971 1.28852 1.02727 0.84629 0.94843 1.74862 1.01960 1.26121 1.16563 1.78645 1.16239 0.99182 1.17326 1.78975 1.07147 1.17706 1.05051 1.22385 1.00377 0.81391 0.98495 0.96842 0.97514 0.95895 0.94264 0.92681 0.89135 0.86472 0.86980 0.81535 0.77348 0.68526 0.92633 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.58 7.70 127.77 0.98 9.56 16 2 N -0.60 -27.94 2.93 -696.12 -2.04 -29.98 16 3 C -0.27 -13.85 9.59 84.03 0.81 -13.04 16 4 H 0.08 3.71 7.85 -2.91 -0.02 3.69 16 5 C -0.05 -2.56 5.06 84.86 0.43 -2.13 16 6 N -0.93 -53.31 10.86 21.65 0.24 -53.08 16 7 Si 0.96 43.57 29.58 68.60 2.03 45.60 16 8 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 11 C 0.16 5.57 3.42 46.18 0.16 5.73 16 12 H 0.09 2.80 7.93 -2.38 -0.02 2.78 16 13 C -0.15 -3.67 6.65 31.99 0.21 -3.45 16 14 C 0.10 1.34 6.69 86.86 0.58 1.92 16 15 N -0.60 -13.35 3.33 -811.79 -2.70 -16.05 16 16 C 0.51 11.44 7.87 87.66 0.69 12.13 16 17 O -0.58 -20.88 16.03 -3.02 -0.05 -20.93 16 18 C 0.10 0.90 5.97 85.63 0.51 1.41 16 19 N -0.30 -5.31 3.19 -355.55 -1.14 -6.44 16 20 C 0.19 2.46 12.79 180.27 2.31 4.77 16 21 N -0.35 -8.61 12.36 -60.29 -0.74 -9.35 16 22 N -0.12 -3.79 13.43 37.01 0.50 -3.29 16 23 N -0.10 -3.00 12.29 37.02 0.45 -2.54 16 24 C 0.10 3.18 6.41 86.73 0.56 3.74 16 25 H 0.01 0.69 7.32 -2.39 -0.02 0.68 16 26 H 0.01 0.33 7.43 -2.39 -0.02 0.31 16 27 H 0.02 0.98 6.30 -2.39 -0.02 0.96 16 28 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 29 H 0.05 1.66 7.28 -2.39 -0.02 1.64 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.12 0.59 7.48 -2.39 -0.02 0.57 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.17 0.49 7.85 -2.39 -0.02 0.47 16 34 H 0.21 -1.00 8.08 -2.38 -0.02 -1.02 16 35 H 0.30 -0.73 8.06 -2.91 -0.02 -0.75 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.60 6.15 -2.39 -0.01 1.58 16 Total: -1.00 -87.51 311.93 4.87 -82.65 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: 1.09 Total: -7.20 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.23 Total: 20.62 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -5.44 Total: -120.75 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -87.51 4.87 -82.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971043633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.167 kcal (2) G-P(sol) polarization free energy of solvation -87.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds