Wall clock time and date at job start Tue Mar 31 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36930 * 120.00235 * 2 1 4 4 H 1.08009 * 120.00303 * 201.71644 * 3 2 1 5 5 C 1.38813 * 119.99979 * 21.71675 * 3 2 1 6 6 N 1.31618 * 120.00311 * 13.66833 * 5 3 2 7 7 Si 1.86811 * 119.99901 * 193.66879 * 5 3 2 8 8 H 1.48502 * 109.47027 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46636 * 120.00019 * 7 5 3 10 10 H 1.48489 * 109.46988 * 239.99839 * 7 5 3 11 11 C 1.46503 * 120.00041 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.64601 * 176.85745 * 11 2 1 13 13 C 1.55156 * 110.87069 * 53.61061 * 11 2 1 14 14 C 1.55135 * 101.48542 * 205.90289 * 13 11 2 15 15 N 1.47420 * 104.72229 * 37.29466 * 14 13 11 16 16 C 1.34778 * 125.64564 * 155.82003 * 15 14 13 17 17 O 1.21285 * 119.99639 * 179.41139 * 16 15 14 18 18 C 1.50696 * 120.00249 * 359.69047 * 16 15 14 19 19 N 1.46501 * 109.47178 * 179.72218 * 18 16 15 20 20 N 1.28880 * 125.44688 * 90.00423 * 19 18 16 21 21 C 1.31035 * 107.91578 * 179.97438 * 20 19 18 22 22 N 1.33314 * 106.90221 * 359.97438 * 21 20 19 23 23 N 1.28780 * 125.44998 * 269.69216 * 19 18 16 24 24 C 1.47024 * 108.70600 * 335.55549 * 15 14 13 25 25 H 1.09003 * 109.47479 * 274.46006 * 1 2 3 26 26 H 1.09003 * 109.47252 * 34.45750 * 1 2 3 27 27 H 1.09002 * 109.47518 * 154.46218 * 1 2 3 28 28 H 0.96996 * 120.00213 * 180.02562 * 6 5 3 29 29 H 1.09007 * 111.00692 * 324.13496 * 13 11 2 30 30 H 1.08996 * 111.00630 * 87.95031 * 13 11 2 31 31 H 1.09001 * 110.49203 * 278.45062 * 14 13 11 32 32 H 1.09004 * 110.34272 * 156.05862 * 14 13 11 33 33 H 1.08996 * 109.46937 * 299.72924 * 18 16 15 34 34 H 1.09007 * 109.46865 * 59.72364 * 18 16 15 35 35 H 1.08005 * 126.54802 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.88555 * 120.70407 * 24 15 14 37 37 H 1.09004 * 109.88196 * 241.87476 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1723 1.2190 -0.3461 5 6 1.5295 2.3453 0.4448 6 7 0.3967 2.2719 1.1108 7 14 2.3029 4.0101 0.0981 8 1 3.5643 3.8212 -0.6624 9 1 1.3624 4.8359 -0.7013 10 1 2.5962 4.6966 1.3817 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0924 -0.0554 13 6 1.7290 -2.1780 -1.1661 14 6 2.0620 -3.5881 -0.6116 15 7 1.7542 -3.5069 0.8278 16 6 1.4459 -4.5490 1.6251 17 8 1.2201 -4.3656 2.8025 18 6 1.3880 -5.9427 1.0549 19 7 1.0416 -6.8908 2.1168 20 7 -0.1543 -7.2439 2.4426 21 6 -0.0666 -8.1019 3.4290 22 7 1.2309 -8.2589 3.6919 23 7 1.8836 -7.5089 2.8701 24 6 1.8453 -2.1019 1.2510 25 1 -0.3634 0.0799 1.0246 26 1 -0.3634 0.8474 -0.5815 27 1 -0.3634 -0.9273 -0.4430 28 1 -0.0368 3.0821 1.4213 29 1 0.6591 -2.0668 -1.3429 30 1 2.2963 -1.9724 -2.0738 31 1 3.1169 -3.8178 -0.7617 32 1 1.4368 -4.3413 -1.0913 33 1 0.6321 -5.9833 0.2707 34 1 2.3599 -6.2048 0.6367 35 1 -0.8884 -8.5895 3.9323 36 1 0.8885 -1.7742 1.6574 37 1 2.6271 -1.9911 2.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971544666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:03 Heat of formation + Delta-G solvation = 139.276378 kcal Electronic energy + Delta-G solvation = -21817.343652 eV Core-core repulsion = 18441.779806 eV Total energy + Delta-G solvation = -3375.563846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.43242 -40.07727 -37.75131 -35.05878 -34.97624 -33.18680 -31.90942 -30.14350 -29.53915 -27.75503 -26.13878 -24.21579 -24.05930 -22.83228 -22.55119 -19.85962 -19.34746 -18.12938 -17.65199 -17.17394 -16.47007 -16.29767 -15.57351 -15.28345 -14.88446 -14.38450 -13.94329 -13.57216 -13.48332 -13.21517 -12.70866 -12.63674 -12.28641 -12.11267 -12.03498 -11.69223 -11.24725 -11.08879 -11.03318 -10.89880 -10.74638 -10.67187 -10.55441 -10.37384 -10.01120 -9.92961 -9.87229 -8.66642 -8.59905 -6.93665 -5.84904 -3.32134 1.05655 1.61843 2.14938 2.35984 2.90414 3.31424 3.38815 3.40795 3.90679 4.07706 4.24243 4.38461 4.45363 4.73826 4.77613 5.07302 5.13773 5.32461 5.44218 5.56033 5.58071 5.63458 5.74072 5.83143 5.91044 6.17949 6.19803 6.28613 6.49171 6.70008 6.72561 7.24613 7.43779 7.61768 7.70308 7.93613 8.24177 8.25172 9.09123 9.71428 10.19072 11.19646 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.040517 B = 0.003429 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.894721 B = 8163.360061 C = 8396.819739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.073 0.927 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.093 3.907 15 N -0.604 5.604 16 C 0.513 3.487 17 O -0.526 6.526 18 C 0.114 3.886 19 N -0.124 5.124 20 N -0.301 5.301 21 C 0.143 3.857 22 N -0.287 5.287 23 N -0.050 5.050 24 C 0.087 3.913 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.002 0.998 28 H 0.254 0.746 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -17.094 -5.255 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.090 0.910 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.193 4.193 14 C -0.030 4.030 15 N -0.338 5.338 16 C 0.297 3.703 17 O -0.402 6.402 18 C -0.011 4.011 19 N -0.036 5.036 20 N -0.150 5.150 21 C -0.160 4.160 22 N -0.158 5.158 23 N -0.044 5.044 24 C -0.037 4.037 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.220 -16.678 -4.667 17.361 hybrid contribution -0.337 0.858 0.103 0.928 sum 0.883 -15.819 -4.564 16.488 Atomic orbital electron populations 1.20828 0.82324 0.95819 0.99577 1.43955 1.01955 0.99875 1.84648 1.19273 0.97962 0.84873 1.37282 0.90970 1.25056 0.97745 0.98710 0.97860 1.70088 1.18771 1.27232 1.38559 0.86149 0.78563 0.83974 0.77606 1.20204 1.21520 1.21633 1.21370 0.96610 0.85974 0.89841 0.90101 1.23395 1.03081 0.92732 1.00096 1.22551 1.00562 0.99850 0.80047 1.48489 1.67201 1.07853 1.10259 1.19764 0.78849 0.85125 0.86586 1.90823 1.49165 1.84606 1.15587 1.22030 1.06702 0.85721 0.86610 1.49516 1.01250 1.28269 1.24522 1.74711 1.06649 1.15875 1.17767 1.27336 0.96040 0.97472 0.95153 1.75863 1.04373 1.17753 1.17856 1.78983 1.20168 1.04622 1.00672 1.23112 1.02727 0.77412 1.00494 0.95130 0.93479 0.97919 0.93560 0.90135 0.90026 0.90768 0.91042 0.83844 0.83699 0.74805 0.90591 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 7.82 59.84 0.47 4.14 16 2 N -0.58 -13.46 2.93 -171.38 -0.50 -13.96 16 3 C -0.26 -6.82 9.63 -15.06 -0.14 -6.97 16 4 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -25.50 10.68 55.49 0.59 -24.90 16 7 Si 0.91 21.02 29.58 -169.99 -5.03 15.99 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.09 3.43 -66.09 -0.23 2.87 16 12 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 13 C -0.15 -2.03 6.61 -24.46 -0.16 -2.20 16 14 C 0.09 0.92 6.70 -2.41 -0.02 0.91 16 15 N -0.60 -8.43 3.32 -170.37 -0.57 -9.00 16 16 C 0.51 7.48 7.92 -10.99 -0.09 7.39 16 17 O -0.53 -10.45 16.76 5.55 0.09 -10.36 16 18 C 0.11 1.11 6.08 -5.19 -0.03 1.07 16 19 N -0.12 -1.62 3.49 -11.72 -0.04 -1.66 16 20 N -0.30 -3.95 12.13 29.34 0.36 -3.59 16 21 C 0.14 1.64 13.26 -91.59 -1.21 0.43 16 22 N -0.29 -4.01 12.50 29.33 0.37 -3.65 16 23 N -0.05 -0.73 13.25 60.35 0.80 0.07 16 24 C 0.09 1.55 6.51 -3.06 -0.02 1.53 16 25 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 26 H 0.05 1.18 7.23 -51.93 -0.38 0.80 16 27 H 0.00 0.05 6.04 -51.93 -0.31 -0.27 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.08 1.16 6.07 -51.93 -0.32 0.85 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.48 7.49 -51.93 -0.39 0.09 16 33 H 0.14 0.93 7.86 -51.93 -0.41 0.52 16 34 H 0.15 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.24 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.08 1.61 7.11 -51.93 -0.37 1.24 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -34.60 312.80 -5.36 -39.96 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.62 Total: -2.84 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.52 Total: 9.23 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 1.00 Total: -56.70 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.60 -5.36 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971544666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.237 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds