Wall clock time and date at job start Tue Mar 31 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36930 * 120.00235 * 2 1 4 4 H 1.08009 * 120.00303 * 201.71644 * 3 2 1 5 5 C 1.38813 * 119.99979 * 21.71675 * 3 2 1 6 6 N 1.31618 * 120.00311 * 13.66833 * 5 3 2 7 7 Si 1.86811 * 119.99901 * 193.66879 * 5 3 2 8 8 H 1.48502 * 109.47027 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46636 * 120.00019 * 7 5 3 10 10 H 1.48489 * 109.46988 * 239.99839 * 7 5 3 11 11 C 1.46503 * 120.00041 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.64601 * 176.85745 * 11 2 1 13 13 C 1.55156 * 110.87069 * 53.61061 * 11 2 1 14 14 C 1.55135 * 101.48542 * 205.90289 * 13 11 2 15 15 N 1.47420 * 104.72229 * 37.29466 * 14 13 11 16 16 C 1.34778 * 125.64564 * 155.82003 * 15 14 13 17 17 O 1.21285 * 119.99639 * 179.41139 * 16 15 14 18 18 C 1.50696 * 120.00249 * 359.69047 * 16 15 14 19 19 N 1.46501 * 109.47178 * 179.72218 * 18 16 15 20 20 N 1.28880 * 125.44688 * 90.00423 * 19 18 16 21 21 C 1.31035 * 107.91578 * 179.97438 * 20 19 18 22 22 N 1.33314 * 106.90221 * 359.97438 * 21 20 19 23 23 N 1.28780 * 125.44998 * 269.69216 * 19 18 16 24 24 C 1.47024 * 108.70600 * 335.55549 * 15 14 13 25 25 H 1.09003 * 109.47479 * 274.46006 * 1 2 3 26 26 H 1.09003 * 109.47252 * 34.45750 * 1 2 3 27 27 H 1.09002 * 109.47518 * 154.46218 * 1 2 3 28 28 H 0.96996 * 120.00213 * 180.02562 * 6 5 3 29 29 H 1.09007 * 111.00692 * 324.13496 * 13 11 2 30 30 H 1.08996 * 111.00630 * 87.95031 * 13 11 2 31 31 H 1.09001 * 110.49203 * 278.45062 * 14 13 11 32 32 H 1.09004 * 110.34272 * 156.05862 * 14 13 11 33 33 H 1.08996 * 109.46937 * 299.72924 * 18 16 15 34 34 H 1.09007 * 109.46865 * 59.72364 * 18 16 15 35 35 H 1.08005 * 126.54802 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.88555 * 120.70407 * 24 15 14 37 37 H 1.09004 * 109.88196 * 241.87476 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1723 1.2190 -0.3461 5 6 1.5295 2.3453 0.4448 6 7 0.3967 2.2719 1.1108 7 14 2.3029 4.0101 0.0981 8 1 3.5643 3.8212 -0.6624 9 1 1.3624 4.8359 -0.7013 10 1 2.5962 4.6966 1.3817 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0924 -0.0554 13 6 1.7290 -2.1780 -1.1661 14 6 2.0620 -3.5881 -0.6116 15 7 1.7542 -3.5069 0.8278 16 6 1.4459 -4.5490 1.6251 17 8 1.2201 -4.3656 2.8025 18 6 1.3880 -5.9427 1.0549 19 7 1.0416 -6.8908 2.1168 20 7 -0.1543 -7.2439 2.4426 21 6 -0.0666 -8.1019 3.4290 22 7 1.2309 -8.2589 3.6919 23 7 1.8836 -7.5089 2.8701 24 6 1.8453 -2.1019 1.2510 25 1 -0.3634 0.0799 1.0246 26 1 -0.3634 0.8474 -0.5815 27 1 -0.3634 -0.9273 -0.4430 28 1 -0.0368 3.0821 1.4213 29 1 0.6591 -2.0668 -1.3429 30 1 2.2963 -1.9724 -2.0738 31 1 3.1169 -3.8178 -0.7617 32 1 1.4368 -4.3413 -1.0913 33 1 0.6321 -5.9833 0.2707 34 1 2.3599 -6.2048 0.6367 35 1 -0.8884 -8.5895 3.9323 36 1 0.8885 -1.7742 1.6574 37 1 2.6271 -1.9911 2.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971544666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:02 Heat of formation + Delta-G solvation = 113.698108 kcal Electronic energy + Delta-G solvation = -21818.452809 eV Core-core repulsion = 18441.779806 eV Total energy + Delta-G solvation = -3376.673003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.36271 -41.26160 -39.09613 -36.62590 -36.01938 -34.13829 -33.56957 -31.56610 -30.56122 -29.04839 -28.07656 -25.56757 -24.98146 -24.18617 -23.69132 -21.06786 -20.70178 -19.09269 -18.94800 -18.65795 -17.65041 -17.46746 -16.89181 -16.41671 -16.23471 -15.69421 -15.11440 -15.03700 -14.87144 -14.50816 -14.22170 -13.73204 -13.68520 -13.35751 -13.14424 -12.99026 -12.80531 -12.53791 -12.40743 -12.28727 -12.18224 -12.07150 -12.05133 -11.80622 -11.72755 -11.40262 -11.05027 -10.66105 -9.80066 -8.85297 -7.85799 -5.34684 0.07518 0.80526 1.24912 1.28315 1.46556 1.48242 1.58378 1.83838 2.49784 3.13177 3.16458 3.28305 3.46964 3.55639 3.81005 3.87082 3.98638 4.02216 4.27780 4.36797 4.46829 4.64879 4.71386 4.77599 4.80232 4.87381 5.00978 5.03535 5.15024 5.21039 5.32458 5.45373 5.63585 5.69596 6.28962 6.34428 6.82562 7.11045 7.29511 7.82584 8.25779 9.17451 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.040517 B = 0.003429 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.894721 B = 8163.360061 C = 8396.819739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.082 0.918 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.260 1.260 9 H -0.292 1.292 10 H -0.298 1.298 11 C 0.163 3.837 12 H 0.086 0.914 13 C -0.141 4.141 14 C 0.096 3.904 15 N -0.600 5.600 16 C 0.509 3.491 17 O -0.591 6.591 18 C 0.117 3.883 19 N -0.125 5.125 20 N -0.318 5.318 21 C 0.148 3.852 22 N -0.312 5.312 23 N -0.071 5.071 24 C 0.098 3.902 25 H -0.009 1.009 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.247 0.753 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.276 0.724 36 H 0.033 0.967 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -19.450 -7.829 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.184 1.184 9 H -0.219 1.219 10 H -0.226 1.226 11 C 0.055 3.945 12 H 0.104 0.896 13 C -0.181 4.181 14 C -0.025 4.025 15 N -0.333 5.333 16 C 0.296 3.704 17 O -0.472 6.472 18 C -0.005 4.005 19 N -0.038 5.038 20 N -0.168 5.168 21 C -0.154 4.154 22 N -0.183 5.183 23 N -0.065 5.065 24 C -0.028 4.028 25 H 0.009 0.991 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.203 0.797 34 H 0.207 0.793 35 H 0.291 0.709 36 H 0.051 0.949 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.300 -19.090 -7.305 20.569 hybrid contribution -0.640 1.525 0.919 1.892 sum 1.660 -17.565 -6.386 18.764 Atomic orbital electron populations 1.20466 0.82937 0.96248 0.96941 1.44147 1.01955 1.01189 1.84960 1.19696 0.98230 0.86026 1.35449 0.90055 1.25840 0.98539 1.02108 0.98547 1.70273 1.20508 1.27361 1.40607 0.85158 0.78228 0.79872 0.76898 1.18371 1.21916 1.22577 1.21632 0.96509 0.84662 0.91741 0.89625 1.23274 1.02567 0.93378 0.98839 1.22917 1.03828 0.98846 0.76918 1.48475 1.66729 1.05929 1.12161 1.20635 0.77124 0.86900 0.85767 1.90800 1.51916 1.85835 1.18617 1.22437 1.10630 0.81526 0.85954 1.49809 1.01042 1.28244 1.24694 1.74701 1.06955 1.16519 1.18621 1.28188 0.96282 0.96571 0.94393 1.75831 1.05576 1.18501 1.18380 1.78916 1.20897 1.05351 1.01338 1.22584 0.99621 0.80592 0.99972 0.99105 0.96186 0.94488 0.94399 0.91227 0.87689 0.87330 0.86041 0.79709 0.79269 0.70889 0.94860 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.54 7.82 127.77 1.00 9.54 16 2 N -0.60 -28.00 2.93 -696.14 -2.04 -30.04 16 3 C -0.26 -13.71 9.63 84.03 0.81 -12.90 16 4 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 5 C -0.06 -3.03 5.08 84.86 0.43 -2.60 16 6 N -0.94 -55.58 10.68 21.65 0.23 -55.35 16 7 Si 0.97 43.98 29.58 68.60 2.03 46.01 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 9 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 10 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 11 C 0.16 5.66 3.43 46.18 0.16 5.82 16 12 H 0.09 2.87 7.92 -2.39 -0.02 2.85 16 13 C -0.14 -3.22 6.61 32.06 0.21 -3.01 16 14 C 0.10 1.38 6.70 86.94 0.58 1.96 16 15 N -0.60 -15.35 3.32 -811.33 -2.70 -18.05 16 16 C 0.51 13.86 7.92 87.66 0.69 14.55 16 17 O -0.59 -23.80 16.76 -3.04 -0.05 -23.85 16 18 C 0.12 1.78 6.08 85.63 0.52 2.31 16 19 N -0.13 -2.97 3.49 -190.99 -0.67 -3.63 16 20 N -0.32 -7.68 12.13 -61.10 -0.74 -8.42 16 21 C 0.15 3.13 13.26 180.69 2.40 5.52 16 22 N -0.31 -8.34 12.50 -61.11 -0.76 -9.11 16 23 N -0.07 -1.95 13.25 37.02 0.49 -1.46 16 24 C 0.10 3.57 6.51 86.73 0.56 4.13 16 25 H -0.01 -0.52 7.33 -2.39 -0.02 -0.54 16 26 H 0.02 1.02 7.23 -2.39 -0.02 1.01 16 27 H 0.04 1.47 6.04 -2.39 -0.01 1.45 16 28 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.07 1.77 6.07 -2.38 -0.01 1.76 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 0.70 7.49 -2.39 -0.02 0.68 16 33 H 0.19 1.29 7.86 -2.39 -0.02 1.27 16 34 H 0.19 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.28 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.03 1.49 7.11 -2.39 -0.02 1.47 16 37 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -82.80 312.80 4.25 -78.55 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.09 Total: 0.02 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 7.37 Total: 25.33 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -6.19 Total: -126.06 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -82.80 4.25 -78.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971544666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.252 kcal (2) G-P(sol) polarization free energy of solvation -82.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds