Wall clock time and date at job start Tue Mar 31 2020 01:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00505 * 2 1 4 4 H 1.07993 * 120.00392 * 160.70849 * 3 2 1 5 5 C 1.38811 * 119.99616 * 340.42500 * 3 2 1 6 6 N 1.31622 * 120.00228 * 347.09957 * 5 3 2 7 7 Si 1.86798 * 119.99953 * 167.10240 * 5 3 2 8 8 H 1.48505 * 109.47387 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47182 * 120.00080 * 7 5 3 10 10 H 1.48504 * 109.47333 * 240.00011 * 7 5 3 11 11 C 1.46499 * 119.99607 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88919 * 180.70058 * 11 2 1 13 13 C 1.55156 * 111.01006 * 304.58587 * 11 2 1 14 14 C 1.54319 * 102.94346 * 153.57303 * 13 11 2 15 15 N 1.47023 * 107.27195 * 337.80970 * 14 13 11 16 16 C 1.34784 * 125.64395 * 178.99319 * 15 14 13 17 17 O 1.21285 * 119.99231 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00222 * 359.97438 * 16 15 14 19 19 N 1.46501 * 109.46591 * 179.97438 * 18 16 15 20 20 N 1.28882 * 125.44458 * 90.00585 * 19 18 16 21 21 C 1.31046 * 107.91206 * 179.97438 * 20 19 18 22 22 N 1.33314 * 106.90086 * 359.97438 * 21 20 19 23 23 N 1.28781 * 125.45005 * 269.68993 * 19 18 16 24 24 C 1.47458 * 108.72341 * 358.97222 * 15 14 13 25 25 H 1.09004 * 109.46255 * 84.82571 * 1 2 3 26 26 H 1.08993 * 109.47283 * 204.83314 * 1 2 3 27 27 H 1.09004 * 109.47024 * 324.83277 * 1 2 3 28 28 H 0.96997 * 120.00228 * 179.97438 * 6 5 3 29 29 H 1.08999 * 110.72213 * 271.94004 * 13 11 2 30 30 H 1.09004 * 110.71725 * 35.21338 * 13 11 2 31 31 H 1.08999 * 109.88032 * 97.22683 * 14 13 11 32 32 H 1.09008 * 109.88261 * 218.23640 * 14 13 11 33 33 H 1.08998 * 109.46743 * 299.99741 * 18 16 15 34 34 H 1.08998 * 109.47362 * 60.00085 * 18 16 15 35 35 H 1.08000 * 126.54840 * 179.97438 * 21 20 19 36 36 H 1.09004 * 110.35640 * 265.25195 * 24 15 14 37 37 H 1.09002 * 110.40635 * 142.91617 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1842 1.2120 0.3090 5 6 1.5159 2.3532 -0.4028 6 7 0.3548 2.2925 -1.0196 7 14 2.3109 4.0104 -0.0694 8 1 3.6041 3.8071 0.6317 9 1 2.5509 4.7120 -1.3560 10 1 1.4099 4.8297 0.7805 11 6 2.1974 -1.2688 0.0006 12 1 3.2737 -1.0963 0.0129 13 6 1.7635 -2.1611 1.1934 14 6 2.0555 -3.5875 0.6822 15 7 2.0774 -3.5289 -0.7867 16 6 2.3199 -4.5675 -1.6107 17 8 2.3123 -4.4028 -2.8123 18 6 2.6006 -5.9334 -1.0391 19 7 2.8294 -6.8823 -2.1315 20 7 3.9724 -7.1458 -2.6655 21 6 3.7818 -8.0385 -3.6058 22 7 2.4766 -8.3097 -3.6239 23 7 1.9215 -7.5906 -2.7080 24 6 1.7897 -2.1458 -1.2095 25 1 -0.3632 0.0927 -1.0236 26 1 -0.3633 -0.9326 0.4316 27 1 -0.3633 0.8401 0.5919 28 1 -0.0883 3.1083 -1.3008 29 1 2.3599 -1.9388 2.0783 30 1 0.7009 -2.0361 1.4019 31 1 3.0233 -3.9237 1.0543 32 1 1.2729 -4.2687 1.0167 33 1 3.4866 -5.8871 -0.4059 34 1 1.7469 -6.2615 -0.4461 35 1 4.5376 -8.4718 -4.2440 36 1 0.7272 -2.0278 -1.4227 37 1 2.3843 -1.8845 -2.0849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971544667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:05 Heat of formation + Delta-G solvation = 139.178792 kcal Electronic energy + Delta-G solvation = -21754.919918 eV Core-core repulsion = 18379.351840 eV Total energy + Delta-G solvation = -3375.568078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.44440 -40.09471 -37.76267 -35.07311 -35.00549 -33.19913 -31.92806 -30.16105 -29.54470 -27.75443 -26.16409 -24.23013 -24.07298 -22.85092 -22.50738 -19.78085 -19.47626 -18.13129 -17.67047 -17.18427 -16.49554 -16.23060 -15.81912 -15.06508 -14.91867 -14.36083 -13.96712 -13.58875 -13.43004 -13.17074 -12.86640 -12.55526 -12.46240 -12.15219 -12.07992 -11.65808 -11.26515 -11.10359 -11.00397 -10.91529 -10.75862 -10.61544 -10.54799 -10.36057 -10.03119 -9.92748 -9.87895 -8.73303 -8.58170 -6.95960 -5.84773 -3.30412 1.04345 1.60478 2.13623 2.33371 2.88266 3.31493 3.38887 3.40776 3.89311 4.06677 4.22932 4.38218 4.45087 4.72593 4.78524 5.07427 5.13884 5.30454 5.46435 5.55524 5.58049 5.62031 5.73225 5.83057 5.89711 6.13221 6.20410 6.26758 6.45906 6.66178 6.72208 7.27940 7.41576 7.60900 7.71114 7.90709 8.22953 8.24161 9.09400 9.71477 10.17791 11.19813 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.003367 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.493266 B = 8314.925868 C = 8484.371462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.288 1.288 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.095 3.905 15 N -0.604 5.604 16 C 0.514 3.486 17 O -0.526 6.526 18 C 0.114 3.886 19 N -0.124 5.124 20 N -0.301 5.301 21 C 0.143 3.857 22 N -0.287 5.287 23 N -0.050 5.050 24 C 0.087 3.913 25 H 0.030 0.970 26 H 0.002 0.998 27 H 0.049 0.951 28 H 0.254 0.746 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.072 0.928 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -16.891 4.834 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.028 4.028 15 N -0.339 5.339 16 C 0.298 3.702 17 O -0.402 6.402 18 C -0.011 4.011 19 N -0.036 5.036 20 N -0.151 5.151 21 C -0.160 4.160 22 N -0.158 5.158 23 N -0.044 5.044 24 C -0.037 4.037 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.252 0.748 36 H 0.090 0.910 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.183 -16.535 4.353 17.603 hybrid contribution 0.846 0.870 -0.169 1.225 sum 5.029 -15.665 4.183 16.977 Atomic orbital electron populations 1.20864 0.82126 0.95775 0.99723 1.43918 1.02062 0.99801 1.84683 1.19296 0.96635 0.84527 1.38710 0.90903 1.25016 0.97527 0.98600 0.98345 1.70099 1.16869 1.26867 1.41090 0.86129 0.78591 0.83879 0.77574 1.20249 1.21651 1.21510 1.21451 0.96548 0.85802 0.89973 0.90213 1.23219 1.03237 0.92368 1.00529 1.22211 1.01113 1.00102 0.79394 1.48461 1.68406 1.09709 1.07317 1.19752 0.78745 0.84842 0.86846 1.90822 1.51404 1.83805 1.14213 1.22027 1.07673 0.86013 0.85343 1.49519 1.01910 1.27114 1.25027 1.74708 1.10119 1.17716 1.12520 1.27337 0.94667 0.96101 0.97901 1.75867 1.06886 1.19408 1.13663 1.78994 1.18158 1.02938 1.04294 1.23300 1.01631 0.77802 1.00985 0.95121 0.97997 0.93204 0.93579 0.90189 0.90107 0.91304 0.91435 0.83795 0.83706 0.74810 0.90960 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.63 7.71 59.85 0.46 4.09 16 2 N -0.58 -13.42 2.97 -171.03 -0.51 -13.93 16 3 C -0.26 -6.77 9.66 -15.06 -0.15 -6.92 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 6 N -0.90 -25.39 10.50 55.49 0.58 -24.81 16 7 Si 0.91 21.04 29.57 -169.99 -5.03 16.01 16 8 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.12 3.54 -65.78 -0.23 2.89 16 12 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 13 C -0.15 -2.05 6.48 -24.90 -0.16 -2.21 16 14 C 0.09 0.95 6.49 -3.07 -0.02 0.93 16 15 N -0.60 -8.35 3.33 -170.48 -0.57 -8.91 16 16 C 0.51 7.36 7.92 -10.98 -0.09 7.27 16 17 O -0.53 -10.27 16.69 5.55 0.09 -10.18 16 18 C 0.11 1.09 6.28 -5.19 -0.03 1.05 16 19 N -0.12 -1.60 3.49 -11.72 -0.04 -1.64 16 20 N -0.30 -3.86 12.13 29.34 0.36 -3.51 16 21 C 0.14 1.61 13.26 -91.58 -1.21 0.40 16 22 N -0.29 -3.98 12.50 29.33 0.37 -3.61 16 23 N -0.05 -0.72 13.25 60.35 0.80 0.08 16 24 C 0.09 1.54 6.49 -2.51 -0.02 1.52 16 25 H 0.03 0.77 7.43 -51.93 -0.39 0.39 16 26 H 0.00 0.03 6.17 -51.93 -0.32 -0.29 16 27 H 0.05 1.24 7.10 -51.93 -0.37 0.87 16 28 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.24 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.07 1.40 7.20 -51.93 -0.37 1.02 16 37 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -34.24 313.61 -5.44 -39.67 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.68 Total: -2.94 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.54 Total: 9.05 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.99 Total: -56.34 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.24 -5.44 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971544667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.853 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds