Wall clock time and date at job start Tue Mar 31 2020 01:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00505 * 2 1 4 4 H 1.07993 * 120.00392 * 160.70849 * 3 2 1 5 5 C 1.38811 * 119.99616 * 340.42500 * 3 2 1 6 6 N 1.31622 * 120.00228 * 347.09957 * 5 3 2 7 7 Si 1.86798 * 119.99953 * 167.10240 * 5 3 2 8 8 H 1.48505 * 109.47387 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47182 * 120.00080 * 7 5 3 10 10 H 1.48504 * 109.47333 * 240.00011 * 7 5 3 11 11 C 1.46499 * 119.99607 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.88919 * 180.70058 * 11 2 1 13 13 C 1.55156 * 111.01006 * 304.58587 * 11 2 1 14 14 C 1.54319 * 102.94346 * 153.57303 * 13 11 2 15 15 N 1.47023 * 107.27195 * 337.80970 * 14 13 11 16 16 C 1.34784 * 125.64395 * 178.99319 * 15 14 13 17 17 O 1.21285 * 119.99231 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00222 * 359.97438 * 16 15 14 19 19 N 1.46501 * 109.46591 * 179.97438 * 18 16 15 20 20 N 1.28882 * 125.44458 * 90.00585 * 19 18 16 21 21 C 1.31046 * 107.91206 * 179.97438 * 20 19 18 22 22 N 1.33314 * 106.90086 * 359.97438 * 21 20 19 23 23 N 1.28781 * 125.45005 * 269.68993 * 19 18 16 24 24 C 1.47458 * 108.72341 * 358.97222 * 15 14 13 25 25 H 1.09004 * 109.46255 * 84.82571 * 1 2 3 26 26 H 1.08993 * 109.47283 * 204.83314 * 1 2 3 27 27 H 1.09004 * 109.47024 * 324.83277 * 1 2 3 28 28 H 0.96997 * 120.00228 * 179.97438 * 6 5 3 29 29 H 1.08999 * 110.72213 * 271.94004 * 13 11 2 30 30 H 1.09004 * 110.71725 * 35.21338 * 13 11 2 31 31 H 1.08999 * 109.88032 * 97.22683 * 14 13 11 32 32 H 1.09008 * 109.88261 * 218.23640 * 14 13 11 33 33 H 1.08998 * 109.46743 * 299.99741 * 18 16 15 34 34 H 1.08998 * 109.47362 * 60.00085 * 18 16 15 35 35 H 1.08000 * 126.54840 * 179.97438 * 21 20 19 36 36 H 1.09004 * 110.35640 * 265.25195 * 24 15 14 37 37 H 1.09002 * 110.40635 * 142.91617 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1842 1.2120 0.3090 5 6 1.5159 2.3532 -0.4028 6 7 0.3548 2.2925 -1.0196 7 14 2.3109 4.0104 -0.0694 8 1 3.6041 3.8071 0.6317 9 1 2.5509 4.7120 -1.3560 10 1 1.4099 4.8297 0.7805 11 6 2.1974 -1.2688 0.0006 12 1 3.2737 -1.0963 0.0129 13 6 1.7635 -2.1611 1.1934 14 6 2.0555 -3.5875 0.6822 15 7 2.0774 -3.5289 -0.7867 16 6 2.3199 -4.5675 -1.6107 17 8 2.3123 -4.4028 -2.8123 18 6 2.6006 -5.9334 -1.0391 19 7 2.8294 -6.8823 -2.1315 20 7 3.9724 -7.1458 -2.6655 21 6 3.7818 -8.0385 -3.6058 22 7 2.4766 -8.3097 -3.6239 23 7 1.9215 -7.5906 -2.7080 24 6 1.7897 -2.1458 -1.2095 25 1 -0.3632 0.0927 -1.0236 26 1 -0.3633 -0.9326 0.4316 27 1 -0.3633 0.8401 0.5919 28 1 -0.0883 3.1083 -1.3008 29 1 2.3599 -1.9388 2.0783 30 1 0.7009 -2.0361 1.4019 31 1 3.0233 -3.9237 1.0543 32 1 1.2729 -4.2687 1.0167 33 1 3.4866 -5.8871 -0.4059 34 1 1.7469 -6.2615 -0.4461 35 1 4.5376 -8.4718 -4.2440 36 1 0.7272 -2.0278 -1.4227 37 1 2.3843 -1.8845 -2.0849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971544667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:05 Heat of formation + Delta-G solvation = 114.121933 kcal Electronic energy + Delta-G solvation = -21756.006465 eV Core-core repulsion = 18379.351840 eV Total energy + Delta-G solvation = -3376.654625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.35885 -41.26350 -39.09451 -36.64723 -36.01694 -34.13358 -33.57426 -31.57493 -30.55245 -29.03692 -28.08449 -25.58184 -24.97854 -24.19308 -23.63586 -21.03567 -20.76431 -19.08370 -18.95502 -18.66579 -17.62297 -17.52691 -16.82400 -16.57909 -15.95101 -15.78519 -15.12990 -14.92253 -14.85316 -14.41130 -14.27269 -13.97351 -13.68491 -13.43893 -13.13027 -12.98476 -12.81868 -12.51575 -12.40085 -12.26868 -12.14471 -12.05587 -12.03455 -11.80991 -11.72657 -11.38767 -11.04865 -10.66280 -9.80799 -8.85636 -7.85321 -5.32266 0.07724 0.80547 1.25218 1.27979 1.46516 1.48231 1.58083 1.82630 2.49961 3.12551 3.16604 3.28616 3.47512 3.53467 3.87041 3.90484 3.98827 4.00833 4.20745 4.36626 4.44267 4.68578 4.71639 4.77978 4.79341 4.86125 5.00910 5.01818 5.13386 5.24460 5.33474 5.45952 5.62779 5.73673 6.28451 6.33805 6.81735 7.11918 7.29865 7.83427 8.24842 9.17764 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.003367 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.493266 B = 8314.925868 C = 8484.371462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.263 4.263 4 H 0.079 0.921 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.262 1.262 9 H -0.298 1.298 10 H -0.291 1.291 11 C 0.164 3.836 12 H 0.077 0.923 13 C -0.141 4.141 14 C 0.095 3.905 15 N -0.600 5.600 16 C 0.511 3.489 17 O -0.590 6.590 18 C 0.117 3.883 19 N -0.125 5.125 20 N -0.317 5.317 21 C 0.148 3.852 22 N -0.313 5.313 23 N -0.073 5.073 24 C 0.097 3.903 25 H -0.006 1.006 26 H 0.039 0.961 27 H 0.021 0.979 28 H 0.247 0.753 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.276 0.724 36 H 0.049 0.951 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -19.158 7.253 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.393 4.393 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.186 1.186 9 H -0.226 1.226 10 H -0.218 1.218 11 C 0.055 3.945 12 H 0.095 0.905 13 C -0.180 4.180 14 C -0.025 4.025 15 N -0.333 5.333 16 C 0.298 3.702 17 O -0.471 6.471 18 C -0.005 4.005 19 N -0.038 5.038 20 N -0.166 5.166 21 C -0.154 4.154 22 N -0.183 5.183 23 N -0.067 5.067 24 C -0.028 4.028 25 H 0.012 0.988 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.205 0.795 34 H 0.204 0.796 35 H 0.291 0.709 36 H 0.068 0.932 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.776 -18.858 6.835 20.874 hybrid contribution 0.417 1.514 -0.942 1.832 sum 6.192 -17.344 5.893 19.336 Atomic orbital electron populations 1.20524 0.82501 0.96374 0.97253 1.44099 1.02179 1.00981 1.85062 1.19683 0.96893 0.85778 1.36988 0.90292 1.25778 0.98319 1.01858 0.99064 1.70277 1.18437 1.26990 1.43017 0.85158 0.78240 0.79920 0.76835 1.18617 1.22581 1.21764 1.21660 0.96001 0.84603 0.92248 0.90476 1.23082 1.03010 0.93073 0.98867 1.22547 1.05091 0.98600 0.76311 1.48432 1.67848 1.07865 1.09190 1.20590 0.77200 0.86406 0.86031 1.90800 1.54102 1.85006 1.17148 1.22428 1.11457 0.82123 0.84532 1.49813 1.01631 1.27056 1.25280 1.74698 1.10414 1.18298 1.13232 1.28196 0.94627 0.95119 0.97494 1.75834 1.08179 1.20213 1.14106 1.78930 1.18934 1.03784 1.05005 1.22778 0.99470 0.80905 0.99687 0.98787 0.94291 0.95985 0.94361 0.88149 0.90822 0.86991 0.87364 0.79484 0.79574 0.70855 0.93225 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.33 7.71 127.77 0.98 9.32 16 2 N -0.60 -27.93 2.97 -695.01 -2.06 -29.99 16 3 C -0.26 -13.73 9.66 84.03 0.81 -12.92 16 4 H 0.08 3.93 7.82 -2.91 -0.02 3.91 16 5 C -0.06 -3.02 5.11 84.86 0.43 -2.58 16 6 N -0.94 -54.97 10.50 21.65 0.23 -54.74 16 7 Si 0.97 44.01 29.57 68.60 2.03 46.04 16 8 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 9 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 C 0.16 5.75 3.54 46.39 0.16 5.91 16 12 H 0.08 2.72 7.92 -2.38 -0.02 2.70 16 13 C -0.14 -3.24 6.48 31.78 0.21 -3.04 16 14 C 0.10 1.41 6.49 86.73 0.56 1.97 16 15 N -0.60 -15.10 3.33 -811.67 -2.70 -17.81 16 16 C 0.51 13.59 7.92 87.66 0.69 14.28 16 17 O -0.59 -23.21 16.69 -3.04 -0.05 -23.26 16 18 C 0.12 1.74 6.28 85.63 0.54 2.28 16 19 N -0.13 -2.91 3.49 -190.99 -0.67 -3.58 16 20 N -0.32 -7.40 12.13 -61.09 -0.74 -8.14 16 21 C 0.15 3.04 13.26 180.68 2.40 5.44 16 22 N -0.31 -8.28 12.50 -61.11 -0.76 -9.04 16 23 N -0.07 -1.99 13.25 37.02 0.49 -1.50 16 24 C 0.10 3.49 6.49 86.85 0.56 4.05 16 25 H -0.01 -0.33 7.43 -2.38 -0.02 -0.35 16 26 H 0.04 1.49 6.17 -2.39 -0.01 1.47 16 27 H 0.02 1.12 7.10 -2.39 -0.02 1.10 16 28 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.83 6.17 -2.39 -0.01 1.82 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.19 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.19 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.28 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.05 1.99 7.20 -2.39 -0.02 1.97 16 37 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 Total: -1.00 -81.32 313.61 4.21 -77.11 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 1.09 Total: 0.20 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 7.35 Total: 24.71 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -6.21 Total: -124.80 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -81.32 4.21 -77.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971544667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.232 kcal (2) G-P(sol) polarization free energy of solvation -81.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds