Wall clock time and date at job start Tue Mar 31 2020 02:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47249 * 269.99569 * 3 2 1 5 5 H 1.48508 * 109.47053 * 29.99571 * 3 2 1 6 6 H 1.48496 * 109.47265 * 149.99114 * 3 2 1 7 7 C 1.38809 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99720 * 164.17437 * 7 2 1 9 9 N 1.36937 * 120.00603 * 344.16964 * 7 2 1 10 10 C 1.47161 * 121.07726 * 153.78354 * 9 7 2 11 11 C 1.53284 * 108.53635 * 128.70417 * 10 9 7 12 12 O 1.43116 * 109.21994 * 53.06178 * 11 10 9 13 13 C 1.41886 * 114.42179 * 299.11887 * 12 11 10 14 14 C 1.54372 * 110.72152 * 183.13694 * 13 12 11 15 15 C 1.54464 * 102.87155 * 83.66880 * 14 13 12 16 16 N 1.47084 * 107.29598 * 21.50073 * 15 14 13 17 17 C 1.34772 * 125.63255 * 180.98772 * 16 15 14 18 18 O 1.21282 * 120.00498 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99758 * 0.30167 * 17 16 15 20 20 C 1.52999 * 117.49855 * 248.34286 * 19 17 16 21 21 C 1.53001 * 60.00115 * 252.51160 * 20 19 17 22 22 C 1.47580 * 108.73552 * 1.25170 * 16 15 14 23 23 C 1.47326 * 121.07342 * 333.77056 * 9 7 2 24 24 H 0.96998 * 119.99972 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.63293 * 248.41644 * 10 9 7 26 26 H 1.09004 * 109.62782 * 8.99371 * 10 9 7 27 27 H 1.08995 * 109.51595 * 172.98656 * 11 10 9 28 28 H 1.09003 * 109.51113 * 293.09174 * 11 10 9 29 29 H 1.08999 * 110.73259 * 325.32544 * 14 13 12 30 30 H 1.08997 * 110.73203 * 202.01195 * 14 13 12 31 31 H 1.08997 * 109.87767 * 262.07844 * 15 14 13 32 32 H 1.09004 * 110.00196 * 140.99381 * 15 14 13 33 33 H 1.09002 * 115.55367 * 34.05561 * 19 17 16 34 34 H 1.08996 * 117.50205 * 0.02562 * 20 19 17 35 35 H 1.09002 * 117.49733 * 145.01901 * 20 19 17 36 36 H 1.08998 * 117.50062 * 252.51046 * 21 20 19 37 37 H 1.09002 * 117.49698 * 107.48800 * 21 20 19 38 38 H 1.09002 * 110.37434 * 95.24811 * 22 16 15 39 39 H 1.09001 * 110.37505 * 217.58733 * 22 16 15 40 40 H 1.09000 * 109.64087 * 109.46036 * 23 9 7 41 41 H 1.09001 * 109.81242 * 348.94024 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0595 -1.2200 -0.2545 9 7 1.3645 -2.3655 0.3245 10 6 1.8355 -3.6631 -0.1854 11 6 1.9819 -4.6273 0.9972 12 8 0.7555 -4.6586 1.7342 13 6 0.3683 -3.4085 2.2823 14 6 -0.9188 -3.5553 3.1218 15 6 -0.3842 -4.0283 4.4915 16 7 1.0315 -3.6365 4.5674 17 6 1.8610 -3.8860 5.5999 18 8 3.0145 -3.5142 5.5547 19 6 1.3567 -4.6324 6.8081 20 6 1.2366 -3.8542 8.1199 21 6 2.3488 -4.8901 7.9441 22 6 1.3919 -2.9194 3.3289 23 6 0.1760 -2.3584 1.1951 24 1 -0.4850 0.8400 -0.0004 25 1 1.1113 -4.0622 -0.8955 26 1 2.8008 -3.5355 -0.6753 27 1 2.2094 -5.6266 0.6262 28 1 2.7890 -4.2874 1.6463 29 1 -1.5803 -4.3041 2.6862 30 1 -1.4289 -2.5967 3.2168 31 1 -0.4735 -5.1117 4.5702 32 1 -0.9445 -3.5509 5.2955 33 1 0.6100 -5.4008 6.6082 34 1 1.5218 -2.8023 8.1090 35 1 0.4104 -4.1104 8.7832 36 1 2.2544 -5.8278 8.4917 37 1 3.3661 -4.5197 7.8175 38 1 1.3047 -1.8427 3.4748 39 1 2.4041 -3.1805 3.0201 40 1 -0.7101 -2.5977 0.6073 41 1 0.0584 -1.3757 1.6517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972207742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:49 Heat of formation + Delta-G solvation = -17.989390 kcal Electronic energy + Delta-G solvation = -23266.984957 eV Core-core repulsion = 19955.849148 eV Total energy + Delta-G solvation = -3311.135810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28008 -38.92230 -36.45180 -35.73762 -34.45980 -31.74284 -31.23595 -29.09059 -27.78659 -26.20412 -24.02409 -23.27230 -22.60836 -22.41036 -21.08099 -18.93275 -18.74314 -17.50268 -16.95169 -16.13765 -15.46929 -15.36368 -15.03216 -14.50810 -14.35764 -14.17513 -13.53358 -13.48365 -13.29681 -13.07797 -12.78049 -12.22624 -12.08879 -11.87222 -11.65293 -11.34974 -11.08009 -11.07584 -10.84529 -10.77204 -10.69677 -10.58622 -10.43255 -10.29824 -9.95022 -9.64640 -9.54125 -9.07404 -8.55783 -8.32926 -6.76267 -5.86521 -3.29166 2.64170 3.15306 3.34265 3.41596 3.44983 3.81319 4.20640 4.42036 4.53095 4.70358 4.80017 4.87513 4.93954 5.12079 5.26314 5.33800 5.39527 5.45017 5.56527 5.62653 5.71739 5.82089 5.83987 5.88924 6.01538 6.03746 6.07901 6.20468 6.25345 6.27983 6.47918 6.55037 6.63671 6.77841 7.03352 7.39599 7.70923 7.75752 7.91851 8.30452 8.37908 9.09309 9.71904 10.29036 11.22119 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.005463 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.994346 B = 5123.719001 C = 5639.289812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.373 6.373 13 C 0.085 3.915 14 C -0.117 4.117 15 C 0.107 3.893 16 N -0.609 5.609 17 C 0.553 3.447 18 O -0.547 6.547 19 C -0.188 4.188 20 C -0.153 4.153 21 C -0.150 4.150 22 C 0.095 3.905 23 C 0.164 3.836 24 H 0.255 0.745 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -9.673 11.829 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.033 4.033 12 O -0.292 6.292 13 C 0.043 3.957 14 C -0.155 4.155 15 C -0.016 4.016 16 N -0.342 5.342 17 C 0.342 3.658 18 O -0.425 6.425 19 C -0.209 4.209 20 C -0.191 4.191 21 C -0.187 4.187 22 C -0.026 4.026 23 C 0.037 3.963 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.080 -9.489 11.863 15.332 hybrid contribution 0.431 1.024 -0.223 1.133 sum -1.649 -8.464 11.640 14.486 Atomic orbital electron populations 1.69998 1.05202 1.25649 1.54148 1.25013 0.95357 0.98357 1.00748 0.86294 0.79261 0.83468 0.77807 1.21286 1.21449 1.20374 1.19185 0.92303 0.84276 1.42332 0.91369 1.44106 1.32258 1.01450 1.54078 1.21593 0.98679 0.87522 0.93830 1.23103 0.86331 0.99776 0.94113 1.87609 1.41017 1.30309 1.70298 1.22759 0.92490 0.86851 0.93646 1.22552 0.96939 1.03075 0.92917 1.22039 0.81500 0.99764 0.98324 1.48515 1.11361 1.56363 1.17946 1.19249 0.84781 0.79265 0.82532 1.90689 1.17730 1.53553 1.80524 1.22173 1.05326 1.04029 0.89340 1.22912 1.01470 0.98293 0.96416 1.22935 0.96398 1.00496 0.98893 1.22795 1.00808 0.96604 0.82436 1.21170 0.89348 0.96616 0.89123 0.93503 0.95477 0.91865 0.89906 0.93511 0.89222 0.88920 0.91548 0.91563 0.86082 0.88309 0.87923 0.88079 0.87485 0.90376 0.89996 0.94865 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.40 11.11 55.49 0.62 -24.79 16 2 C 0.00 0.10 4.98 -17.43 -0.09 0.01 16 3 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.79 9.66 -15.06 -0.15 -6.93 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -14.66 2.99 -172.25 -0.52 -15.18 16 10 C 0.11 2.31 6.71 -3.53 -0.02 2.29 16 11 C 0.04 0.83 6.79 37.30 0.25 1.08 16 12 O -0.37 -7.20 10.28 -35.22 -0.36 -7.56 16 13 C 0.08 1.60 0.83 -89.52 -0.07 1.53 16 14 C -0.12 -1.73 6.11 -25.24 -0.15 -1.88 16 15 C 0.11 1.41 6.32 -2.96 -0.02 1.39 16 16 N -0.61 -10.17 3.33 -170.61 -0.57 -10.74 16 17 C 0.55 9.36 7.63 -10.99 -0.08 9.28 16 18 O -0.55 -11.36 16.52 5.56 0.09 -11.27 16 19 C -0.19 -2.27 5.54 -91.77 -0.51 -2.78 16 20 C -0.15 -1.54 10.23 -26.73 -0.27 -1.81 16 21 C -0.15 -1.59 10.04 -26.73 -0.27 -1.86 16 22 C 0.10 1.86 5.87 -2.74 -0.02 1.85 16 23 C 0.16 3.75 4.05 -3.92 -0.02 3.74 16 24 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.05 0.91 6.29 -51.93 -0.33 0.58 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.31 8.00 -51.93 -0.42 0.90 16 31 H 0.07 0.79 7.97 -51.93 -0.41 0.37 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.12 1.22 7.66 -51.93 -0.40 0.82 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 1.32 7.67 -51.93 -0.40 0.93 16 38 H 0.08 1.63 7.82 -51.93 -0.41 1.22 16 39 H 0.08 1.79 6.05 -51.93 -0.31 1.47 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -31.55 326.60 -8.59 -40.14 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.32 Total: 2.10 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.42 Total: 5.89 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.47 Total: -50.70 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.27 Total: -18.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.55 -8.59 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972207742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.151 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds