Wall clock time and date at job start Tue Mar 31 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47249 * 269.99569 * 3 2 1 5 5 H 1.48508 * 109.47053 * 29.99571 * 3 2 1 6 6 H 1.48496 * 109.47265 * 149.99114 * 3 2 1 7 7 C 1.38809 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99720 * 164.17437 * 7 2 1 9 9 N 1.36937 * 120.00603 * 344.16964 * 7 2 1 10 10 C 1.47161 * 121.07726 * 153.78354 * 9 7 2 11 11 C 1.53284 * 108.53635 * 128.70417 * 10 9 7 12 12 O 1.43116 * 109.21994 * 53.06178 * 11 10 9 13 13 C 1.41886 * 114.42179 * 299.11887 * 12 11 10 14 14 C 1.54372 * 110.72152 * 183.13694 * 13 12 11 15 15 C 1.54464 * 102.87155 * 83.66880 * 14 13 12 16 16 N 1.47084 * 107.29598 * 21.50073 * 15 14 13 17 17 C 1.34772 * 125.63255 * 180.98772 * 16 15 14 18 18 O 1.21282 * 120.00498 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99758 * 0.30167 * 17 16 15 20 20 C 1.52999 * 117.49855 * 248.34286 * 19 17 16 21 21 C 1.53001 * 60.00115 * 252.51160 * 20 19 17 22 22 C 1.47580 * 108.73552 * 1.25170 * 16 15 14 23 23 C 1.47326 * 121.07342 * 333.77056 * 9 7 2 24 24 H 0.96998 * 119.99972 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.63293 * 248.41644 * 10 9 7 26 26 H 1.09004 * 109.62782 * 8.99371 * 10 9 7 27 27 H 1.08995 * 109.51595 * 172.98656 * 11 10 9 28 28 H 1.09003 * 109.51113 * 293.09174 * 11 10 9 29 29 H 1.08999 * 110.73259 * 325.32544 * 14 13 12 30 30 H 1.08997 * 110.73203 * 202.01195 * 14 13 12 31 31 H 1.08997 * 109.87767 * 262.07844 * 15 14 13 32 32 H 1.09004 * 110.00196 * 140.99381 * 15 14 13 33 33 H 1.09002 * 115.55367 * 34.05561 * 19 17 16 34 34 H 1.08996 * 117.50205 * 0.02562 * 20 19 17 35 35 H 1.09002 * 117.49733 * 145.01901 * 20 19 17 36 36 H 1.08998 * 117.50062 * 252.51046 * 21 20 19 37 37 H 1.09002 * 117.49698 * 107.48800 * 21 20 19 38 38 H 1.09002 * 110.37434 * 95.24811 * 22 16 15 39 39 H 1.09001 * 110.37505 * 217.58733 * 22 16 15 40 40 H 1.09000 * 109.64087 * 109.46036 * 23 9 7 41 41 H 1.09001 * 109.81242 * 348.94024 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0595 -1.2200 -0.2545 9 7 1.3645 -2.3655 0.3245 10 6 1.8355 -3.6631 -0.1854 11 6 1.9819 -4.6273 0.9972 12 8 0.7555 -4.6586 1.7342 13 6 0.3683 -3.4085 2.2823 14 6 -0.9188 -3.5553 3.1218 15 6 -0.3842 -4.0283 4.4915 16 7 1.0315 -3.6365 4.5674 17 6 1.8610 -3.8860 5.5999 18 8 3.0145 -3.5142 5.5547 19 6 1.3567 -4.6324 6.8081 20 6 1.2366 -3.8542 8.1199 21 6 2.3488 -4.8901 7.9441 22 6 1.3919 -2.9194 3.3289 23 6 0.1760 -2.3584 1.1951 24 1 -0.4850 0.8400 -0.0004 25 1 1.1113 -4.0622 -0.8955 26 1 2.8008 -3.5355 -0.6753 27 1 2.2094 -5.6266 0.6262 28 1 2.7890 -4.2874 1.6463 29 1 -1.5803 -4.3041 2.6862 30 1 -1.4289 -2.5967 3.2168 31 1 -0.4735 -5.1117 4.5702 32 1 -0.9445 -3.5509 5.2955 33 1 0.6100 -5.4008 6.6082 34 1 1.5218 -2.8023 8.1090 35 1 0.4104 -4.1104 8.7832 36 1 2.2544 -5.8278 8.4917 37 1 3.3661 -4.5197 7.8175 38 1 1.3047 -1.8427 3.4748 39 1 2.4041 -3.1805 3.0201 40 1 -0.7101 -2.5977 0.6073 41 1 0.0584 -1.3757 1.6517 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972207742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:48 Heat of formation + Delta-G solvation = -38.764730 kcal Electronic energy + Delta-G solvation = -23267.885844 eV Core-core repulsion = 19955.849148 eV Total energy + Delta-G solvation = -3312.036696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67259 -40.31653 -37.75285 -36.91104 -36.28926 -33.35476 -33.07060 -30.44883 -29.45225 -27.93368 -25.49222 -24.95213 -23.73563 -23.29064 -22.66035 -20.48429 -20.02759 -18.96533 -18.59571 -17.68563 -16.89074 -16.71609 -16.54232 -16.16815 -15.75359 -15.51441 -15.23329 -15.11344 -14.69272 -14.54492 -14.31693 -13.65333 -13.40352 -13.33432 -13.02757 -12.85341 -12.70331 -12.52357 -12.43152 -12.28950 -12.18830 -12.17928 -11.82397 -11.53404 -11.44793 -11.18443 -10.98355 -10.80370 -10.54223 -9.68481 -8.74855 -7.93813 -5.39171 1.41661 1.43087 1.44261 1.53194 1.89968 2.44120 2.73777 2.92146 3.19591 3.32563 3.53502 3.64412 3.77383 3.84866 3.99585 4.03349 4.17517 4.22879 4.26763 4.31082 4.49283 4.55155 4.64241 4.71713 4.73610 4.78914 4.85552 4.91822 4.99233 5.02140 5.06667 5.14120 5.20641 5.22145 5.25261 5.48987 5.57883 6.26013 6.32848 6.51528 7.04858 7.08318 7.72053 8.25987 9.12406 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.005463 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.994346 B = 5123.719001 C = 5639.289812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.615 5.615 10 C 0.106 3.894 11 C 0.052 3.948 12 O -0.371 6.371 13 C 0.090 3.910 14 C -0.112 4.112 15 C 0.108 3.892 16 N -0.610 5.610 17 C 0.542 3.458 18 O -0.600 6.600 19 C -0.195 4.195 20 C -0.137 4.137 21 C -0.150 4.150 22 C 0.104 3.896 23 C 0.174 3.826 24 H 0.253 0.747 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.012 0.988 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -11.482 13.701 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.396 4.396 8 H 0.082 0.918 9 N -0.339 5.339 10 C -0.019 4.019 11 C -0.025 4.025 12 O -0.289 6.289 13 C 0.048 3.952 14 C -0.150 4.150 15 C -0.013 4.013 16 N -0.342 5.342 17 C 0.333 3.667 18 O -0.482 6.482 19 C -0.215 4.215 20 C -0.174 4.174 21 C -0.187 4.187 22 C -0.020 4.020 23 C 0.048 3.952 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.052 0.948 29 H 0.128 0.872 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.170 0.830 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.318 -11.332 13.739 18.116 hybrid contribution 0.859 1.583 -0.854 1.993 sum -2.459 -9.749 12.886 16.344 Atomic orbital electron populations 1.70124 1.06260 1.26022 1.55155 1.25663 0.96113 1.00976 1.00980 0.85379 0.78002 0.79973 0.77749 1.20772 1.21389 1.20343 1.19444 0.92461 0.85646 1.42011 0.91773 1.44369 1.32544 1.02143 1.54892 1.21744 0.98671 0.86533 0.94963 1.23094 0.85820 1.00941 0.92682 1.87615 1.41146 1.29994 1.70194 1.22572 0.94624 0.85641 0.92394 1.22622 0.95059 1.04185 0.93100 1.22281 0.79308 1.01639 0.98069 1.48628 1.13019 1.55801 1.16793 1.20251 0.84134 0.78746 0.83549 1.90659 1.20125 1.55753 1.81620 1.22208 1.06838 1.04909 0.87576 1.23047 1.02092 0.97206 0.95037 1.23036 0.95111 1.02213 0.98348 1.22405 0.99425 0.95594 0.84562 1.20952 0.88094 0.96602 0.89580 0.93779 0.95511 0.91419 0.86131 0.94810 0.87218 0.88602 0.88923 0.88292 0.82957 0.90056 0.84158 0.84773 0.90195 0.92888 0.93035 0.96967 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.67 11.11 21.65 0.24 -53.43 16 2 C -0.04 -2.30 4.98 84.86 0.42 -1.88 16 3 Si 0.96 45.24 29.58 68.60 2.03 47.26 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.27 -14.78 9.66 84.03 0.81 -13.97 16 8 H 0.06 3.53 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -31.22 2.99 -698.87 -2.09 -33.31 16 10 C 0.11 4.50 6.71 86.35 0.58 5.08 16 11 C 0.05 1.90 6.79 72.08 0.49 2.39 16 12 O -0.37 -13.84 10.28 -148.95 -1.53 -15.37 16 13 C 0.09 3.39 0.83 -10.08 -0.01 3.38 16 14 C -0.11 -3.08 6.11 31.56 0.19 -2.89 16 15 C 0.11 2.50 6.32 86.77 0.55 3.04 16 16 N -0.61 -19.77 3.33 -812.07 -2.71 -22.48 16 17 C 0.54 17.96 7.63 87.66 0.67 18.63 16 18 O -0.60 -25.70 16.52 -3.03 -0.05 -25.75 16 19 C -0.19 -4.12 5.54 -11.54 -0.06 -4.18 16 20 C -0.14 -2.28 10.23 30.59 0.31 -1.97 16 21 C -0.15 -2.80 10.04 30.60 0.31 -2.49 16 22 C 0.10 4.16 5.87 86.63 0.51 4.67 16 23 C 0.17 8.22 4.05 86.01 0.35 8.57 16 24 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 27 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.03 1.33 6.29 -2.39 -0.02 1.31 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 31 H 0.09 1.73 7.97 -2.39 -0.02 1.71 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.15 2.28 7.66 -2.39 -0.02 2.26 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.95 7.67 -2.39 -0.02 1.93 16 38 H 0.05 2.35 7.82 -2.39 -0.02 2.33 16 39 H 0.05 2.36 6.05 -2.39 -0.01 2.35 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 3.63 5.95 -2.39 -0.01 3.61 16 Total: -1.00 -72.25 326.60 2.03 -70.23 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.02 Total: 14.46 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.12 Total: 18.39 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -4.56 Total: -109.21 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.58 Total: -41.12 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.25 2.03 -70.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972207742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.461 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds