Wall clock time and date at job start Tue Mar 31 2020 02:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47535 * 86.14086 * 3 2 1 5 5 H 1.48502 * 109.47202 * 326.14000 * 3 2 1 6 6 H 1.48498 * 109.47034 * 206.13906 * 3 2 1 7 7 C 1.38807 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99751 * 163.38975 * 7 2 1 9 9 N 1.36933 * 120.00213 * 343.39197 * 7 2 1 10 10 C 1.47169 * 121.07545 * 333.12786 * 9 7 2 11 11 C 1.52857 * 108.75806 * 231.25454 * 10 9 7 12 12 O 1.43112 * 109.30122 * 307.17281 * 11 10 9 13 13 C 1.41881 * 114.43550 * 60.73395 * 12 11 10 14 14 C 1.54379 * 110.71779 * 176.91567 * 13 12 11 15 15 C 1.54460 * 102.87935 * 276.30773 * 14 13 12 16 16 N 1.47077 * 107.29424 * 338.50934 * 15 14 13 17 17 C 1.34783 * 125.63176 * 179.03510 * 16 15 14 18 18 O 1.21275 * 120.00229 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99421 * 359.96836 * 17 16 15 20 20 C 1.53005 * 117.49709 * 248.62147 * 19 17 16 21 21 C 1.52999 * 60.00088 * 252.51240 * 20 19 17 22 22 C 1.47572 * 108.74123 * 359.00824 * 16 15 14 23 23 C 1.47328 * 121.07794 * 153.41277 * 9 7 2 24 24 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.62487 * 351.02456 * 10 9 7 26 26 H 1.09002 * 109.62337 * 111.59651 * 10 9 7 27 27 H 1.08995 * 109.58661 * 187.15801 * 11 10 9 28 28 H 1.08997 * 109.36650 * 67.05332 * 11 10 9 29 29 H 1.09000 * 110.73073 * 34.65210 * 14 13 12 30 30 H 1.08997 * 110.73348 * 157.77871 * 14 13 12 31 31 H 1.09007 * 109.87682 * 97.93105 * 15 14 13 32 32 H 1.09001 * 109.87821 * 219.08169 * 15 14 13 33 33 H 1.09001 * 115.55332 * 34.33433 * 19 17 16 34 34 H 1.09000 * 117.49858 * 0.02562 * 20 19 17 35 35 H 1.09003 * 117.49754 * 145.02430 * 20 19 17 36 36 H 1.08994 * 117.50081 * 252.50596 * 21 20 19 37 37 H 1.08999 * 117.49582 * 107.48884 * 21 20 19 38 38 H 1.09006 * 110.37906 * 264.48507 * 22 16 15 39 39 H 1.08998 * 110.37659 * 142.14401 * 22 16 15 40 40 H 1.09004 * 109.63488 * 250.54480 * 23 9 7 41 41 H 1.08997 * 109.63547 * 10.94695 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4161 2.0937 1.3969 5 1 1.4907 2.6277 -0.7801 6 1 3.5861 1.4181 -0.6168 7 6 2.0103 -1.2021 0.0005 8 1 3.0565 -1.2217 -0.2668 9 7 1.3685 -2.3631 0.3400 10 6 0.2001 -2.3516 1.2347 11 6 0.4295 -3.3649 2.3559 12 8 0.7618 -4.6346 1.7853 13 6 1.9415 -4.6332 0.9972 14 6 2.2607 -6.0557 0.4893 15 6 3.0173 -6.6847 1.6800 16 7 3.5462 -5.5802 2.4945 17 6 4.2523 -5.7137 3.6348 18 8 4.6408 -4.7288 4.2264 19 6 4.5590 -7.0868 4.1746 20 6 3.8708 -7.5043 5.4758 21 6 5.3643 -7.1719 5.4728 22 6 3.1767 -4.3016 1.8569 23 6 1.8291 -3.6649 -0.1736 24 1 -0.4850 0.8400 -0.0004 25 1 0.0759 -1.3565 1.6618 26 1 -0.6932 -2.6264 0.6738 27 1 -0.4772 -3.4603 2.9533 28 1 1.2491 -3.0244 2.9887 29 1 1.3431 -6.6060 0.2811 30 1 2.8945 -6.0159 -0.3966 31 1 2.3337 -7.2900 2.2754 32 1 3.8381 -7.3011 1.3135 33 1 4.7298 -7.8594 3.4249 34 1 3.1959 -6.7859 5.9411 35 1 3.5886 -8.5518 5.5823 36 1 6.0645 -8.0006 5.5774 37 1 5.6722 -6.2347 5.9364 38 1 3.9912 -3.9417 1.2282 39 1 2.9241 -3.5591 2.6139 40 1 1.1104 -4.0478 -0.8982 41 1 2.8023 -3.5470 -0.6502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972207743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:52 Heat of formation + Delta-G solvation = -17.653607 kcal Electronic energy + Delta-G solvation = -23134.139484 eV Core-core repulsion = 19823.018235 eV Total energy + Delta-G solvation = -3311.121249 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37606 -38.98267 -36.49800 -35.80139 -34.42991 -31.98359 -31.02557 -29.15909 -27.97822 -26.19005 -24.09130 -23.18758 -22.66623 -22.48187 -21.17073 -19.02626 -18.75054 -17.50544 -16.86168 -16.37586 -15.55655 -15.19708 -15.07284 -14.79777 -14.35647 -14.13275 -13.61329 -13.50908 -13.35269 -13.06673 -12.78518 -12.33089 -12.16413 -11.89531 -11.69292 -11.39233 -11.26172 -11.07840 -10.85348 -10.80634 -10.69981 -10.61900 -10.46775 -10.22859 -9.97053 -9.71396 -9.52453 -9.08940 -8.53879 -8.42056 -6.75332 -5.84610 -3.28927 2.58159 3.05548 3.36006 3.43386 3.44154 3.77557 4.15857 4.39643 4.48555 4.66268 4.73491 4.76530 4.89179 4.97356 5.19803 5.30553 5.35487 5.43115 5.46945 5.56455 5.60787 5.79491 5.83331 5.88315 5.97455 5.98457 6.03854 6.06064 6.28643 6.35460 6.38682 6.45945 6.52730 6.67277 7.09876 7.49901 7.66799 7.71351 7.90810 8.30684 8.32353 9.10330 9.72805 10.29839 11.23387 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.004885 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.530276 B = 5730.971414 C = 6205.592901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.140 3.860 11 C 0.035 3.965 12 O -0.373 6.373 13 C 0.096 3.904 14 C -0.119 4.119 15 C 0.107 3.893 16 N -0.610 5.610 17 C 0.554 3.446 18 O -0.544 6.544 19 C -0.188 4.188 20 C -0.152 4.152 21 C -0.150 4.150 22 C 0.093 3.907 23 C 0.131 3.869 24 H 0.255 0.745 25 H 0.095 0.905 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -16.555 5.234 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.014 3.986 11 C -0.042 4.042 12 O -0.292 6.292 13 C 0.053 3.947 14 C -0.157 4.157 15 C -0.016 4.016 16 N -0.343 5.343 17 C 0.343 3.657 18 O -0.422 6.422 19 C -0.209 4.209 20 C -0.190 4.190 21 C -0.187 4.187 22 C -0.029 4.029 23 C 0.004 3.996 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.388 -16.024 5.616 17.814 hybrid contribution 0.427 1.089 -0.180 1.183 sum 5.815 -14.935 5.436 16.924 Atomic orbital electron populations 1.70028 1.05265 1.25642 1.53699 1.25034 0.95328 0.98443 1.00629 0.86248 0.79141 0.83499 0.77726 1.21349 1.21692 1.20309 1.19184 0.92482 0.84395 1.42297 0.91365 1.44090 1.33943 1.01069 1.52585 1.21345 0.89205 0.98414 0.89614 1.23339 0.99168 0.84750 0.96980 1.87614 1.42064 1.32310 1.67217 1.22319 0.84753 0.95261 0.92356 1.22575 1.00918 0.95143 0.97039 1.22022 0.97348 0.89719 0.92497 1.48467 1.53463 1.08662 1.23692 1.19266 0.77407 0.89844 0.79230 1.90700 1.52969 1.40132 1.58374 1.22161 1.09053 0.96677 0.93039 1.22915 0.96188 1.02452 0.97396 1.22945 0.94042 1.03988 0.97766 1.22736 0.97056 0.85863 0.97244 1.21301 0.99002 0.86955 0.92349 0.93520 0.88690 0.95379 0.89915 0.93816 0.89043 0.89205 0.91218 0.91671 0.86111 0.88262 0.87884 0.88049 0.87461 0.90724 0.89564 0.95040 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.16 55.49 0.62 -25.25 16 2 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.87 9.66 -15.06 -0.15 -7.02 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.62 2.99 -172.51 -0.52 -15.14 16 10 C 0.14 3.34 5.42 -3.75 -0.02 3.32 16 11 C 0.04 0.71 6.77 37.08 0.25 0.96 16 12 O -0.37 -7.19 10.27 -35.22 -0.36 -7.55 16 13 C 0.10 1.67 0.83 -89.65 -0.07 1.60 16 14 C -0.12 -1.52 6.12 -25.24 -0.15 -1.67 16 15 C 0.11 1.27 6.29 -2.96 -0.02 1.25 16 16 N -0.61 -9.52 3.33 -170.77 -0.57 -10.09 16 17 C 0.55 8.95 7.63 -10.98 -0.08 8.87 16 18 O -0.54 -11.00 16.53 5.56 0.09 -10.90 16 19 C -0.19 -2.15 5.54 -91.77 -0.51 -2.66 16 20 C -0.15 -1.49 10.23 -26.73 -0.27 -1.76 16 21 C -0.15 -1.52 10.04 -26.73 -0.27 -1.79 16 22 C 0.09 1.69 5.86 -2.88 -0.02 1.67 16 23 C 0.13 2.65 5.40 -3.92 -0.02 2.63 16 24 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.10 2.50 6.14 -51.93 -0.32 2.19 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.04 0.92 6.27 -51.93 -0.33 0.59 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.09 0.99 7.99 -51.93 -0.42 0.58 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.12 1.09 7.73 -51.93 -0.40 0.69 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.28 7.67 -51.93 -0.40 0.89 16 38 H 0.07 1.36 7.82 -51.93 -0.41 0.96 16 39 H 0.09 1.84 6.03 -51.93 -0.31 1.52 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.25 7.71 -51.93 -0.40 0.85 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -32.07 326.68 -8.59 -40.66 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.33 Total: 1.26 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.42 Total: 5.42 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.47 Total: -50.47 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.27 Total: -18.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.07 -8.59 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972207743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.007 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds