Wall clock time and date at job start Tue Mar 31 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47535 * 86.14086 * 3 2 1 5 5 H 1.48502 * 109.47202 * 326.14000 * 3 2 1 6 6 H 1.48498 * 109.47034 * 206.13906 * 3 2 1 7 7 C 1.38807 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99751 * 163.38975 * 7 2 1 9 9 N 1.36933 * 120.00213 * 343.39197 * 7 2 1 10 10 C 1.47169 * 121.07545 * 333.12786 * 9 7 2 11 11 C 1.52857 * 108.75806 * 231.25454 * 10 9 7 12 12 O 1.43112 * 109.30122 * 307.17281 * 11 10 9 13 13 C 1.41881 * 114.43550 * 60.73395 * 12 11 10 14 14 C 1.54379 * 110.71779 * 176.91567 * 13 12 11 15 15 C 1.54460 * 102.87935 * 276.30773 * 14 13 12 16 16 N 1.47077 * 107.29424 * 338.50934 * 15 14 13 17 17 C 1.34783 * 125.63176 * 179.03510 * 16 15 14 18 18 O 1.21275 * 120.00229 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99421 * 359.96836 * 17 16 15 20 20 C 1.53005 * 117.49709 * 248.62147 * 19 17 16 21 21 C 1.52999 * 60.00088 * 252.51240 * 20 19 17 22 22 C 1.47572 * 108.74123 * 359.00824 * 16 15 14 23 23 C 1.47328 * 121.07794 * 153.41277 * 9 7 2 24 24 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.62487 * 351.02456 * 10 9 7 26 26 H 1.09002 * 109.62337 * 111.59651 * 10 9 7 27 27 H 1.08995 * 109.58661 * 187.15801 * 11 10 9 28 28 H 1.08997 * 109.36650 * 67.05332 * 11 10 9 29 29 H 1.09000 * 110.73073 * 34.65210 * 14 13 12 30 30 H 1.08997 * 110.73348 * 157.77871 * 14 13 12 31 31 H 1.09007 * 109.87682 * 97.93105 * 15 14 13 32 32 H 1.09001 * 109.87821 * 219.08169 * 15 14 13 33 33 H 1.09001 * 115.55332 * 34.33433 * 19 17 16 34 34 H 1.09000 * 117.49858 * 0.02562 * 20 19 17 35 35 H 1.09003 * 117.49754 * 145.02430 * 20 19 17 36 36 H 1.08994 * 117.50081 * 252.50596 * 21 20 19 37 37 H 1.08999 * 117.49582 * 107.48884 * 21 20 19 38 38 H 1.09006 * 110.37906 * 264.48507 * 22 16 15 39 39 H 1.08998 * 110.37659 * 142.14401 * 22 16 15 40 40 H 1.09004 * 109.63488 * 250.54480 * 23 9 7 41 41 H 1.08997 * 109.63547 * 10.94695 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4161 2.0937 1.3969 5 1 1.4907 2.6277 -0.7801 6 1 3.5861 1.4181 -0.6168 7 6 2.0103 -1.2021 0.0005 8 1 3.0565 -1.2217 -0.2668 9 7 1.3685 -2.3631 0.3400 10 6 0.2001 -2.3516 1.2347 11 6 0.4295 -3.3649 2.3559 12 8 0.7618 -4.6346 1.7853 13 6 1.9415 -4.6332 0.9972 14 6 2.2607 -6.0557 0.4893 15 6 3.0173 -6.6847 1.6800 16 7 3.5462 -5.5802 2.4945 17 6 4.2523 -5.7137 3.6348 18 8 4.6408 -4.7288 4.2264 19 6 4.5590 -7.0868 4.1746 20 6 3.8708 -7.5043 5.4758 21 6 5.3643 -7.1719 5.4728 22 6 3.1767 -4.3016 1.8569 23 6 1.8291 -3.6649 -0.1736 24 1 -0.4850 0.8400 -0.0004 25 1 0.0759 -1.3565 1.6618 26 1 -0.6932 -2.6264 0.6738 27 1 -0.4772 -3.4603 2.9533 28 1 1.2491 -3.0244 2.9887 29 1 1.3431 -6.6060 0.2811 30 1 2.8945 -6.0159 -0.3966 31 1 2.3337 -7.2900 2.2754 32 1 3.8381 -7.3011 1.3135 33 1 4.7298 -7.8594 3.4249 34 1 3.1959 -6.7859 5.9411 35 1 3.5886 -8.5518 5.5823 36 1 6.0645 -8.0006 5.5774 37 1 5.6722 -6.2347 5.9364 38 1 3.9912 -3.9417 1.2282 39 1 2.9241 -3.5591 2.6139 40 1 1.1104 -4.0478 -0.8982 41 1 2.8023 -3.5470 -0.6502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972207743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:51 Heat of formation + Delta-G solvation = -39.104533 kcal Electronic energy + Delta-G solvation = -23135.069666 eV Core-core repulsion = 19823.018235 eV Total energy + Delta-G solvation = -3312.051431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69025 -40.33040 -37.78219 -36.92100 -36.24966 -33.58015 -32.82814 -30.46210 -29.61114 -27.86518 -25.51156 -24.89426 -23.76225 -23.29490 -22.70494 -20.47301 -20.03397 -18.88683 -18.55558 -17.74080 -16.99196 -16.74938 -16.46401 -16.22196 -15.72076 -15.65018 -15.23629 -14.94445 -14.75845 -14.55822 -14.31887 -13.64182 -13.37625 -13.28149 -13.12183 -12.92292 -12.65421 -12.50302 -12.43198 -12.31362 -12.17943 -12.10828 -11.86520 -11.53153 -11.44934 -11.18346 -10.98521 -10.83106 -10.54859 -9.67099 -8.75477 -7.93616 -5.40425 1.42152 1.43275 1.45064 1.52911 1.89885 2.43847 2.71852 2.92824 3.20898 3.31262 3.51137 3.64333 3.77123 3.85171 3.95720 3.99282 4.18804 4.24379 4.30675 4.32406 4.48840 4.61101 4.64966 4.72311 4.73474 4.75619 4.83930 4.88715 4.93446 5.01301 5.06318 5.14368 5.22189 5.24505 5.27320 5.50377 5.57659 6.25998 6.31452 6.51208 7.03597 7.09235 7.71638 8.25611 9.12250 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023976 B = 0.004885 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.530276 B = 5730.971414 C = 6205.592901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.964 3.036 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.612 5.612 10 C 0.148 3.852 11 C 0.050 3.950 12 O -0.371 6.371 13 C 0.094 3.906 14 C -0.109 4.109 15 C 0.105 3.895 16 N -0.611 5.611 17 C 0.541 3.459 18 O -0.600 6.600 19 C -0.192 4.192 20 C -0.140 4.140 21 C -0.150 4.150 22 C 0.098 3.902 23 C 0.129 3.871 24 H 0.252 0.748 25 H 0.064 0.936 26 H 0.009 0.991 27 H 0.108 0.892 28 H 0.030 0.970 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 -19.922 4.998 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.336 5.336 10 C 0.022 3.978 11 C -0.027 4.027 12 O -0.290 6.290 13 C 0.052 3.948 14 C -0.147 4.147 15 C -0.016 4.016 16 N -0.343 5.343 17 C 0.332 3.668 18 O -0.482 6.482 19 C -0.213 4.213 20 C -0.178 4.178 21 C -0.187 4.187 22 C -0.026 4.026 23 C 0.003 3.997 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.126 0.874 28 H 0.048 0.952 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.400 -19.452 5.357 21.167 hybrid contribution 0.130 2.125 -0.119 2.133 sum 6.530 -17.326 5.238 19.243 Atomic orbital electron populations 1.70161 1.06524 1.25964 1.55152 1.25735 0.96061 1.01303 1.01050 0.85301 0.78358 0.79808 0.77296 1.21694 1.21721 1.19213 1.19480 0.92730 0.85675 1.41410 0.91360 1.44317 1.33914 1.02191 1.53218 1.21132 0.88532 0.97846 0.90286 1.23089 0.99781 0.84368 0.95492 1.87621 1.42911 1.31148 1.67281 1.22396 0.83714 0.97843 0.90888 1.22680 1.02324 0.91430 0.98232 1.22319 0.98893 0.88696 0.91685 1.48598 1.53132 1.08588 1.23958 1.20250 0.76434 0.91330 0.78742 1.90669 1.55171 1.42468 1.59929 1.22227 1.10435 0.94305 0.94296 1.23029 0.95454 1.03837 0.95430 1.23033 0.95155 1.03911 0.96616 1.22448 0.97237 0.86699 0.96188 1.21485 0.99088 0.85527 0.93624 0.93934 0.91814 0.97319 0.87448 0.95175 0.87345 0.86923 0.89616 0.87714 0.82533 0.90442 0.84216 0.84661 0.90320 0.91445 0.93726 0.94911 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 11.16 21.65 0.24 -54.98 16 2 C -0.05 -2.57 4.95 84.86 0.42 -2.15 16 3 Si 0.96 45.61 29.59 68.60 2.03 47.64 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.26 -14.57 9.66 84.03 0.81 -13.75 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 9 N -0.61 -30.94 2.99 -699.71 -2.09 -33.03 16 10 C 0.15 7.32 5.42 86.20 0.47 7.79 16 11 C 0.05 2.06 6.77 71.93 0.49 2.55 16 12 O -0.37 -13.93 10.27 -148.95 -1.53 -15.46 16 13 C 0.09 3.16 0.83 -10.17 -0.01 3.16 16 14 C -0.11 -2.37 6.12 31.56 0.19 -2.18 16 15 C 0.11 2.04 6.29 86.77 0.55 2.59 16 16 N -0.61 -18.06 3.33 -812.58 -2.71 -20.77 16 17 C 0.54 17.05 7.63 87.66 0.67 17.72 16 18 O -0.60 -25.14 16.53 -3.01 -0.05 -25.19 16 19 C -0.19 -3.80 5.54 -11.54 -0.06 -3.86 16 20 C -0.14 -2.32 10.23 30.60 0.31 -2.01 16 21 C -0.15 -2.69 10.04 30.60 0.31 -2.38 16 22 C 0.10 3.56 5.86 86.55 0.51 4.07 16 23 C 0.13 5.16 5.40 86.01 0.46 5.63 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.06 3.54 6.14 -2.39 -0.01 3.52 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.03 1.32 6.27 -2.39 -0.01 1.31 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 1.98 7.99 -2.39 -0.02 1.96 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.10 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.16 1.97 7.73 -2.39 -0.02 1.95 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.88 7.67 -2.39 -0.02 1.86 16 38 H 0.07 2.51 7.82 -2.38 -0.02 2.49 16 39 H 0.04 1.99 6.03 -2.39 -0.01 1.98 16 40 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 2.75 7.71 -2.39 -0.02 2.73 16 Total: -1.00 -74.20 326.68 2.02 -72.19 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.02 Total: 12.44 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 5.11 Total: 17.16 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.56 Total: -108.78 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -1.58 Total: -40.65 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.20 2.02 -72.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972207743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.082 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds