Wall clock time and date at job start Tue Mar 31 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48492 * 109.47316 * 270.00140 * 3 2 1 5 5 H 1.48504 * 109.46697 * 29.99948 * 3 2 1 6 6 H 1.48497 * 109.47206 * 149.99547 * 3 2 1 7 7 C 1.38809 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00264 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84533 * 336.18911 * 10 9 7 12 12 C 1.53782 * 113.69181 * 107.46093 * 10 9 7 13 13 C 1.53780 * 87.07853 * 139.99063 * 12 10 9 14 14 H 1.09003 * 113.69050 * 220.00653 * 13 12 10 15 15 N 1.46493 * 113.61480 * 89.12025 * 13 12 10 16 16 C 1.34770 * 120.00679 * 107.49846 * 15 13 12 17 17 O 1.21282 * 119.99853 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00451 * 179.97438 * 16 15 13 19 19 H 1.09002 * 115.56123 * 34.41769 * 18 16 15 20 20 C 1.53186 * 117.52289 * 248.64296 * 18 16 15 21 21 C 1.52100 * 117.52187 * 180.19039 * 18 16 15 22 22 C 1.53713 * 121.75249 * 218.55825 * 21 18 16 23 23 C 1.54701 * 103.69721 * 143.51764 * 22 21 18 24 24 O 1.44501 * 104.86738 * 23.83593 * 23 22 21 25 25 C 1.44636 * 105.46504 * 320.02591 * 24 23 22 26 26 C 1.53774 * 87.08421 * 334.56512 * 13 12 10 27 27 H 0.96998 * 119.99722 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99846 * 359.97438 * 9 7 2 29 29 H 1.09003 * 113.61440 * 25.44417 * 12 10 9 30 30 H 1.08995 * 113.61497 * 254.53787 * 12 10 9 31 31 H 0.97004 * 119.99663 * 287.49614 * 15 13 12 32 32 H 1.09001 * 117.52292 * 359.94879 * 20 18 16 33 33 H 1.09002 * 117.52274 * 145.09941 * 20 18 16 34 34 H 1.08996 * 110.58472 * 262.07557 * 22 21 18 35 35 H 1.09007 * 110.57499 * 24.81775 * 22 21 18 36 36 H 1.08996 * 110.35820 * 142.68553 * 23 22 21 37 37 H 1.08999 * 110.35982 * 264.99434 * 23 22 21 38 38 H 1.09003 * 110.41838 * 280.89120 * 25 24 23 39 39 H 1.08997 * 110.42353 * 158.42888 * 25 24 23 40 40 H 1.09002 * 113.61643 * 139.97957 * 26 13 12 41 41 H 1.09001 * 113.61739 * 270.88589 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 3.0659 -3.5639 -0.4031 12 6 2.0001 -4.4026 1.3453 13 6 1.8494 -5.6978 0.5301 14 1 1.1358 -6.4030 0.9563 15 7 3.1272 -6.3231 0.1804 16 6 3.5131 -7.4580 0.7964 17 8 2.8023 -7.9619 1.6400 18 6 4.8273 -8.1016 0.4361 19 1 5.6322 -7.4139 0.1764 20 6 4.7798 -9.4453 -0.2979 21 6 5.2049 -9.3831 1.1631 22 6 6.6511 -9.6708 1.5973 23 6 6.4888 -10.3980 2.9530 24 8 5.1620 -10.9688 2.9111 25 6 4.3300 -9.9652 2.2845 26 6 1.2606 -4.8291 -0.5938 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.1219 -4.1581 1.9429 30 1 2.9284 -4.3502 1.9141 31 1 3.6956 -5.9203 -0.4946 32 1 3.7981 -9.8639 -0.5193 33 1 5.5535 -9.6413 -1.0403 34 1 7.1475 -10.3166 0.8730 35 1 7.2056 -8.7407 1.7227 36 1 7.2370 -11.1842 3.0535 37 1 6.5703 -9.6882 3.7762 38 1 4.0654 -9.1886 3.0021 39 1 3.4320 -10.4214 1.8682 40 1 1.5919 -5.1209 -1.5904 41 1 0.1802 -4.7011 -0.5264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020895939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:40 Heat of formation + Delta-G solvation = -22.410313 kcal Electronic energy + Delta-G solvation = -21586.755562 eV Core-core repulsion = 18275.428047 eV Total energy + Delta-G solvation = -3311.327515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75676 -39.39795 -37.96113 -35.89788 -34.07065 -32.60530 -30.64246 -29.91551 -27.52401 -25.28841 -25.15241 -23.98729 -22.95484 -22.11251 -20.81093 -19.64720 -18.93194 -17.45222 -17.09296 -16.36939 -16.17301 -15.53649 -15.37636 -15.02647 -14.75374 -14.34376 -13.95562 -13.74090 -13.64990 -13.19889 -12.69966 -12.59008 -12.43982 -12.12655 -11.89377 -11.71247 -11.67508 -11.28887 -10.93555 -10.84134 -10.75599 -10.37036 -10.28391 -10.23525 -10.04392 -9.94490 -9.59649 -9.56005 -8.94669 -8.81934 -7.01775 -5.83105 -3.12339 2.38346 3.02472 3.39332 3.43197 3.44669 3.46515 3.83286 4.05696 4.36334 4.45398 4.54671 4.61016 4.80989 4.86350 5.01627 5.10453 5.16957 5.19754 5.34147 5.41199 5.43375 5.46549 5.51528 5.59643 5.63472 5.70007 5.83357 5.86593 5.91410 6.11055 6.22043 6.28820 6.47182 6.58776 6.61259 6.66005 7.04217 7.55493 7.63971 8.23115 8.35269 9.46515 10.03701 10.38019 11.39224 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.002902 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.347063 B = 9647.807551 C = 9916.317956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.096 0.904 15 N -0.701 5.701 16 C 0.542 3.458 17 O -0.541 6.541 18 C -0.173 4.173 19 H 0.127 0.873 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.121 4.121 23 C 0.047 3.953 24 O -0.380 6.380 25 C 0.092 3.908 26 C -0.159 4.159 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.401 0.599 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.429 -20.026 -0.305 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.114 0.886 15 N -0.350 5.350 16 C 0.328 3.672 17 O -0.418 6.418 18 C -0.194 4.194 19 H 0.145 0.855 20 C -0.169 4.169 21 C -0.132 4.132 22 C -0.158 4.158 23 C -0.030 4.030 24 O -0.299 6.299 25 C 0.016 3.984 26 C -0.199 4.199 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.236 0.764 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.941 -20.390 0.378 23.632 hybrid contribution 0.536 1.584 -0.469 1.737 sum 12.476 -18.806 -0.091 22.568 Atomic orbital electron populations 1.69657 1.05157 1.25831 1.57292 1.24774 0.95532 0.97828 1.02697 0.86185 0.78688 0.83755 0.77525 1.21660 1.21709 1.20720 1.19285 0.91045 0.84225 1.43169 0.91129 1.42402 1.05785 0.99850 1.86968 1.21615 0.95045 0.85207 0.92682 0.90898 1.24306 1.01984 0.95260 1.00265 1.21838 0.84875 0.94103 0.98203 0.88620 1.45646 1.22050 1.25519 1.41789 1.19569 0.86163 0.80374 0.81061 1.90677 1.55098 1.63467 1.32595 1.22262 0.98019 0.91918 1.07211 0.85533 1.23000 1.03771 0.96209 0.93906 1.22170 0.96908 0.98944 0.95178 1.22440 0.94004 1.01401 0.97963 1.23388 0.85908 0.97614 0.96115 1.89166 1.19320 1.39976 1.81475 1.22865 0.92465 0.90731 0.92368 1.23860 1.01622 0.97247 0.97175 0.93386 0.77996 0.89571 0.92464 0.76441 0.87779 0.87416 0.90062 0.90000 0.89126 0.92164 0.90215 0.88712 0.91750 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.41 5.40 -52.64 -0.28 -17.69 16 10 C 0.17 3.13 4.35 -67.12 -0.29 2.84 16 11 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 12 C -0.18 -3.05 7.68 -25.92 -0.20 -3.25 16 13 C 0.12 1.69 4.32 -67.13 -0.29 1.40 16 14 H 0.10 1.49 7.46 -51.93 -0.39 1.10 16 15 N -0.70 -8.61 5.26 -53.02 -0.28 -8.89 16 16 C 0.54 6.90 7.61 -10.99 -0.08 6.81 16 17 O -0.54 -8.62 13.43 5.56 0.07 -8.54 16 18 C -0.17 -1.61 6.08 -92.13 -0.56 -2.17 16 19 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.13 -1.06 10.01 -27.00 -0.27 -1.33 16 21 C -0.13 -1.24 2.51 -154.61 -0.39 -1.63 16 22 C -0.12 -0.90 6.88 -25.47 -0.18 -1.08 16 23 C 0.05 0.40 7.65 38.05 0.29 0.69 16 24 O -0.38 -4.59 11.65 -35.23 -0.41 -5.00 16 25 C 0.09 1.09 5.65 37.51 0.21 1.30 16 26 C -0.16 -2.46 7.58 -25.92 -0.20 -2.65 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.39 10.04 7.92 -40.82 -0.32 9.71 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.40 4.06 8.70 -40.82 -0.36 3.70 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.08 7.04 -51.93 -0.37 0.71 16 39 H 0.09 1.16 8.04 -51.93 -0.42 0.75 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -31.96 338.42 -8.76 -40.72 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.47 Total: 10.72 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.20 Total: -6.35 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.16 Total: -53.66 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.34 Total: -13.54 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.96 -8.76 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020895939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.310 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds