Wall clock time and date at job start Tue Mar 31 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48492 * 109.47316 * 270.00140 * 3 2 1 5 5 H 1.48504 * 109.46697 * 29.99948 * 3 2 1 6 6 H 1.48497 * 109.47206 * 149.99547 * 3 2 1 7 7 C 1.38809 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00264 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.84533 * 336.18911 * 10 9 7 12 12 C 1.53782 * 113.69181 * 107.46093 * 10 9 7 13 13 C 1.53780 * 87.07853 * 139.99063 * 12 10 9 14 14 H 1.09003 * 113.69050 * 220.00653 * 13 12 10 15 15 N 1.46493 * 113.61480 * 89.12025 * 13 12 10 16 16 C 1.34770 * 120.00679 * 107.49846 * 15 13 12 17 17 O 1.21282 * 119.99853 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00451 * 179.97438 * 16 15 13 19 19 H 1.09002 * 115.56123 * 34.41769 * 18 16 15 20 20 C 1.53186 * 117.52289 * 248.64296 * 18 16 15 21 21 C 1.52100 * 117.52187 * 180.19039 * 18 16 15 22 22 C 1.53713 * 121.75249 * 218.55825 * 21 18 16 23 23 C 1.54701 * 103.69721 * 143.51764 * 22 21 18 24 24 O 1.44501 * 104.86738 * 23.83593 * 23 22 21 25 25 C 1.44636 * 105.46504 * 320.02591 * 24 23 22 26 26 C 1.53774 * 87.08421 * 334.56512 * 13 12 10 27 27 H 0.96998 * 119.99722 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99846 * 359.97438 * 9 7 2 29 29 H 1.09003 * 113.61440 * 25.44417 * 12 10 9 30 30 H 1.08995 * 113.61497 * 254.53787 * 12 10 9 31 31 H 0.97004 * 119.99663 * 287.49614 * 15 13 12 32 32 H 1.09001 * 117.52292 * 359.94879 * 20 18 16 33 33 H 1.09002 * 117.52274 * 145.09941 * 20 18 16 34 34 H 1.08996 * 110.58472 * 262.07557 * 22 21 18 35 35 H 1.09007 * 110.57499 * 24.81775 * 22 21 18 36 36 H 1.08996 * 110.35820 * 142.68553 * 23 22 21 37 37 H 1.08999 * 110.35982 * 264.99434 * 23 22 21 38 38 H 1.09003 * 110.41838 * 280.89120 * 25 24 23 39 39 H 1.08997 * 110.42353 * 158.42888 * 25 24 23 40 40 H 1.09002 * 113.61643 * 139.97957 * 26 13 12 41 41 H 1.09001 * 113.61739 * 270.88589 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 3.0659 -3.5639 -0.4031 12 6 2.0001 -4.4026 1.3453 13 6 1.8494 -5.6978 0.5301 14 1 1.1358 -6.4030 0.9563 15 7 3.1272 -6.3231 0.1804 16 6 3.5131 -7.4580 0.7964 17 8 2.8023 -7.9619 1.6400 18 6 4.8273 -8.1016 0.4361 19 1 5.6322 -7.4139 0.1764 20 6 4.7798 -9.4453 -0.2979 21 6 5.2049 -9.3831 1.1631 22 6 6.6511 -9.6708 1.5973 23 6 6.4888 -10.3980 2.9530 24 8 5.1620 -10.9688 2.9111 25 6 4.3300 -9.9652 2.2845 26 6 1.2606 -4.8291 -0.5938 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.1219 -4.1581 1.9429 30 1 2.9284 -4.3502 1.9141 31 1 3.6956 -5.9203 -0.4946 32 1 3.7981 -9.8639 -0.5193 33 1 5.5535 -9.6413 -1.0403 34 1 7.1475 -10.3166 0.8730 35 1 7.2056 -8.7407 1.7227 36 1 7.2370 -11.1842 3.0535 37 1 6.5703 -9.6882 3.7762 38 1 4.0654 -9.1886 3.0021 39 1 3.4320 -10.4214 1.8682 40 1 1.5919 -5.1209 -1.5904 41 1 0.1802 -4.7011 -0.5264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020895939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:40 Heat of formation + Delta-G solvation = -44.831096 kcal Electronic energy + Delta-G solvation = -21587.727800 eV Core-core repulsion = 18275.428047 eV Total energy + Delta-G solvation = -3312.299753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66940 -40.47599 -39.14213 -36.74033 -35.75955 -34.07732 -31.84213 -31.25133 -28.37929 -26.72724 -26.51780 -25.38672 -23.66990 -23.54515 -21.72838 -20.53371 -20.24427 -19.13875 -18.30534 -17.26608 -17.14385 -16.74626 -16.37761 -16.22331 -16.04071 -15.53019 -15.44605 -15.17531 -14.42077 -14.36135 -14.02154 -13.56616 -13.46816 -13.33585 -13.30270 -13.10793 -12.81334 -12.59973 -12.36286 -12.16879 -11.98042 -11.84873 -11.74959 -11.49683 -11.21490 -11.03661 -10.86342 -10.84367 -10.50364 -10.01687 -8.99805 -7.95405 -5.24082 1.44308 1.47903 1.49306 1.57577 2.05979 2.56292 2.67932 3.07791 3.33015 3.36248 3.67587 3.70569 3.74895 3.83356 3.90648 3.95451 4.03266 4.25811 4.31676 4.32484 4.46254 4.54756 4.69965 4.73226 4.80307 4.84558 4.89760 4.90150 4.91088 4.97393 5.08327 5.10861 5.12616 5.20265 5.26475 5.50437 5.70370 5.83074 6.26695 6.57838 7.25323 7.32837 8.09466 8.31624 9.27995 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034630 B = 0.002902 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.347063 B = 9647.807551 C = 9916.317956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.728 5.728 10 C 0.154 3.846 11 H 0.085 0.915 12 C -0.173 4.173 13 C 0.135 3.865 14 H 0.088 0.912 15 N -0.692 5.692 16 C 0.537 3.463 17 O -0.578 6.578 18 C -0.171 4.171 19 H 0.156 0.844 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.111 4.111 23 C 0.036 3.964 24 O -0.404 6.404 25 C 0.092 3.908 26 C -0.142 4.142 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.415 0.585 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.245 -20.875 -1.685 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.044 3.956 11 H 0.103 0.897 12 C -0.215 4.215 13 C 0.028 3.972 14 H 0.106 0.894 15 N -0.343 5.343 16 C 0.325 3.675 17 O -0.459 6.459 18 C -0.192 4.192 19 H 0.174 0.826 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.040 4.040 24 O -0.324 6.324 25 C 0.016 3.984 26 C -0.182 4.182 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.252 0.748 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.824 -21.282 -1.020 25.956 hybrid contribution -0.328 1.729 0.031 1.761 sum 14.496 -19.552 -0.989 24.360 Atomic orbital electron populations 1.69815 1.06695 1.26076 1.59564 1.25586 0.96358 1.01220 1.03793 0.85152 0.77707 0.79514 0.77470 1.21228 1.22562 1.19356 1.19714 0.91613 0.85312 1.40926 0.90273 1.42612 1.05449 1.01110 1.87359 1.21963 0.95692 0.83948 0.94000 0.89732 1.24154 1.01085 0.96802 0.99500 1.21473 0.85963 0.92852 0.96864 0.89398 1.45540 1.21267 1.25443 1.42045 1.20243 0.87082 0.79992 0.80188 1.90678 1.56552 1.64402 1.34226 1.22292 0.96570 0.92530 1.07795 0.82604 1.23136 1.04243 0.94307 0.93464 1.22214 0.97575 0.99184 0.95365 1.22453 0.92745 1.02319 0.97340 1.23663 0.84713 0.98515 0.97142 1.89133 1.21007 1.40474 1.81738 1.22675 0.92845 0.90057 0.92846 1.23666 1.00871 0.95174 0.98483 0.94051 0.79438 0.91428 0.92665 0.74770 0.88728 0.84208 0.88069 0.88486 0.87082 0.92304 0.92805 0.90196 0.89395 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 45.37 29.55 68.60 2.03 47.39 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.24 -13.19 9.97 84.03 0.84 -12.36 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.73 -35.66 5.40 -320.45 -1.73 -37.39 16 10 C 0.15 5.62 4.35 45.52 0.20 5.82 16 11 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 12 C -0.17 -5.96 7.68 31.12 0.24 -5.72 16 13 C 0.13 3.82 4.32 45.52 0.20 4.02 16 14 H 0.09 2.71 7.46 -2.39 -0.02 2.69 16 15 N -0.69 -15.54 5.26 -440.07 -2.32 -17.86 16 16 C 0.54 12.85 7.61 87.66 0.67 13.51 16 17 O -0.58 -18.50 13.43 -3.04 -0.04 -18.54 16 18 C -0.17 -2.68 6.08 -11.77 -0.07 -2.75 16 19 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.11 -1.47 10.01 30.42 0.30 -1.17 16 21 C -0.14 -2.39 2.51 -52.25 -0.13 -2.53 16 22 C -0.11 -1.31 6.88 31.41 0.22 -1.10 16 23 C 0.04 0.55 7.65 72.56 0.56 1.11 16 24 O -0.40 -9.65 11.65 -148.98 -1.74 -11.39 16 25 C 0.09 2.21 5.65 72.21 0.41 2.62 16 26 C -0.14 -4.19 7.58 31.12 0.24 -3.95 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.37 19.83 7.92 -92.71 -0.73 19.10 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 7.06 8.70 -92.71 -0.81 6.25 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.53 7.04 -2.39 -0.02 1.52 16 39 H 0.08 2.06 8.04 -2.39 -0.02 2.04 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -70.55 338.42 0.11 -70.44 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.50 Total: 32.52 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 4.12 Total: -6.41 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -3.76 Total: -114.02 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.78 Total: -29.93 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -70.55 0.11 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020895939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.613 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds