Wall clock time and date at job start Tue Mar 31 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48500 * 109.47300 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47509 * 119.99906 * 3 2 1 6 6 H 1.48507 * 109.47286 * 239.99951 * 3 2 1 7 7 C 1.38814 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99589 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99795 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85156 * 336.19402 * 10 9 7 12 12 C 1.53784 * 113.61341 * 107.50072 * 10 9 7 13 13 C 1.53784 * 87.08254 * 89.11615 * 12 10 9 14 14 H 1.08993 * 113.68944 * 270.87154 * 13 12 10 15 15 N 1.46497 * 113.61501 * 139.97801 * 13 12 10 16 16 C 1.34781 * 119.99987 * 107.50202 * 15 13 12 17 17 O 1.21282 * 119.99921 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99979 * 179.97438 * 16 15 13 19 19 H 1.08997 * 115.56818 * 12.72240 * 18 16 15 20 20 C 1.53190 * 117.52166 * 158.49851 * 18 16 15 21 21 C 1.52140 * 117.52037 * 226.94356 * 18 16 15 22 22 C 1.54042 * 121.44350 * 3.49475 * 21 18 16 23 23 C 1.55182 * 101.83019 * 123.35435 * 22 21 18 24 24 O 1.44449 * 103.63496 * 36.32872 * 23 22 21 25 25 C 1.43991 * 107.05009 * 320.43134 * 24 23 22 26 26 C 1.53782 * 87.08051 * 25.43293 * 13 12 10 27 27 H 0.97001 * 120.00378 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00290 * 359.97438 * 9 7 2 29 29 H 1.09005 * 113.61402 * 203.66073 * 12 10 9 30 30 H 1.08998 * 113.61522 * 334.56408 * 12 10 9 31 31 H 0.96998 * 120.00391 * 287.50695 * 15 13 12 32 32 H 1.08993 * 117.52179 * 214.85186 * 20 18 16 33 33 H 1.09004 * 117.51700 * 359.94579 * 20 18 16 34 34 H 1.09002 * 110.95372 * 241.49486 * 22 21 18 35 35 H 1.09001 * 110.95272 * 5.21565 * 22 21 18 36 36 H 1.08997 * 110.58932 * 277.78758 * 23 22 21 37 37 H 1.09002 * 110.58475 * 154.86982 * 23 22 21 38 38 H 1.08997 * 109.97704 * 266.93482 * 25 24 23 39 39 H 1.08999 * 110.00260 * 145.68025 * 25 24 23 40 40 H 1.09009 * 113.61264 * 220.02306 * 26 13 12 41 41 H 1.08996 * 113.69600 * 89.13257 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0656 -3.5638 -0.4049 12 6 1.9992 -4.4021 1.3444 13 6 0.7205 -5.0791 0.8232 14 1 -0.1909 -4.5251 1.0476 15 7 0.6240 -6.4986 1.1723 16 6 -0.2552 -6.9037 2.1101 17 8 -0.9668 -6.0931 2.6646 18 6 -0.3549 -8.3639 2.4688 19 1 0.4505 -8.9962 2.0950 20 6 -0.9590 -8.7186 3.8311 21 6 -1.7461 -8.9739 2.5526 22 6 -3.0044 -8.1560 2.2049 23 6 -3.6512 -9.0245 1.0934 24 8 -3.3785 -10.3783 1.5171 25 6 -2.0412 -10.3924 2.0507 26 6 1.2602 -4.8288 -0.5949 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.8281 -5.0934 1.4970 30 1 1.8294 -3.7478 2.1995 31 1 1.1929 -7.1469 0.7286 32 1 -0.5513 -9.5844 4.3528 33 1 -1.2833 -7.8955 4.4679 34 1 -3.6650 -8.0714 3.0677 35 1 -2.7358 -7.1709 1.8233 36 1 -3.1844 -8.8232 0.1292 37 1 -4.7255 -8.8470 1.0448 38 1 -1.3316 -10.6662 1.2700 39 1 -1.9769 -11.1005 2.8769 40 1 0.4937 -4.5189 -1.3054 41 1 1.8870 -5.6360 -0.9738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020895940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:43 Heat of formation + Delta-G solvation = -22.871557 kcal Electronic energy + Delta-G solvation = -21753.807434 eV Core-core repulsion = 18442.459918 eV Total energy + Delta-G solvation = -3311.347516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72399 -39.32496 -38.01110 -35.84829 -34.04310 -32.63531 -30.51476 -29.75182 -27.83079 -25.30367 -25.13166 -23.73073 -22.95407 -22.30302 -20.57434 -19.72534 -18.59934 -17.43673 -17.09552 -16.53835 -16.31613 -15.82751 -15.29213 -14.88586 -14.61840 -14.38410 -13.97714 -13.67240 -13.16908 -12.93588 -12.81811 -12.71736 -12.48745 -12.11885 -12.01564 -11.70434 -11.55646 -11.22094 -10.87376 -10.81406 -10.71262 -10.30365 -10.28835 -10.19041 -9.97278 -9.90283 -9.72727 -9.52284 -8.92683 -8.71167 -7.02427 -5.80447 -3.10704 2.40551 3.18961 3.42629 3.46931 3.48238 3.56420 3.64852 4.13147 4.38304 4.47912 4.55010 4.65576 4.85826 4.94861 5.05092 5.14734 5.17108 5.22890 5.33586 5.37320 5.41413 5.45815 5.46721 5.55216 5.74376 5.80050 5.85602 5.93177 5.97567 6.06563 6.19927 6.35044 6.54398 6.60106 6.70411 6.76308 7.01125 7.64087 7.67879 8.33555 8.37682 9.48362 10.04429 10.38455 11.41655 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.003125 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.992248 B = 8959.210092 C = 9198.003965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.184 4.184 13 C 0.125 3.875 14 H 0.113 0.887 15 N -0.713 5.713 16 C 0.538 3.462 17 O -0.535 6.535 18 C -0.175 4.175 19 H 0.121 0.879 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.124 4.124 23 C 0.048 3.952 24 O -0.378 6.378 25 C 0.085 3.915 26 C -0.164 4.164 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.396 0.604 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -22.144 3.158 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.226 4.226 13 C 0.022 3.978 14 H 0.131 0.869 15 N -0.362 5.362 16 C 0.324 3.676 17 O -0.412 6.412 18 C -0.197 4.197 19 H 0.139 0.861 20 C -0.163 4.163 21 C -0.136 4.136 22 C -0.161 4.161 23 C -0.029 4.029 24 O -0.297 6.297 25 C 0.009 3.991 26 C -0.204 4.204 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.861 -21.524 3.508 21.887 hybrid contribution 0.736 0.736 -0.165 1.054 sum -1.125 -20.788 3.343 21.085 Atomic orbital electron populations 1.69652 1.05162 1.26008 1.56950 1.24782 0.95535 0.97842 1.02533 0.86236 0.78519 0.83338 0.77875 1.21644 1.21171 1.21179 1.19226 0.91081 0.83909 1.43595 0.90972 1.42187 1.05750 0.99395 1.87035 1.20911 0.95260 0.85430 0.92565 0.91367 1.24318 0.96214 0.99740 1.02355 1.22653 0.99774 0.79446 0.95971 0.86912 1.46070 1.39861 1.09932 1.40376 1.19544 0.79917 0.88637 0.79531 1.90721 1.43324 1.54804 1.52338 1.22351 0.97862 0.95078 1.04383 0.86091 1.22972 1.00500 1.03529 0.89264 1.22169 0.91887 0.96646 1.02848 1.22694 0.94334 0.99661 0.99426 1.23617 1.01287 0.81051 0.96906 1.88911 1.30831 1.28723 1.81212 1.22534 0.84820 0.93822 0.97966 1.23900 1.00756 0.99981 0.95798 0.93292 0.77985 0.91290 0.91054 0.77029 0.87579 0.87016 0.89716 0.88690 0.91990 0.88691 0.91839 0.89251 0.90886 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.59 5.31 -52.63 -0.28 -17.87 16 10 C 0.17 3.32 4.56 -67.11 -0.31 3.01 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.18 -3.20 7.68 -25.92 -0.20 -3.40 16 13 C 0.13 2.03 4.12 -67.12 -0.28 1.76 16 14 H 0.11 2.23 7.46 -51.93 -0.39 1.84 16 15 N -0.71 -9.12 5.35 -53.02 -0.28 -9.41 16 16 C 0.54 7.44 6.93 -10.99 -0.08 7.37 16 17 O -0.53 -9.66 14.35 5.56 0.08 -9.58 16 18 C -0.18 -1.73 6.08 -92.11 -0.56 -2.29 16 19 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 20 C -0.13 -1.16 9.83 -26.99 -0.27 -1.42 16 21 C -0.13 -1.31 2.43 -154.59 -0.38 -1.68 16 22 C -0.12 -1.37 6.50 -25.03 -0.16 -1.53 16 23 C 0.05 0.47 7.73 38.31 0.30 0.77 16 24 O -0.38 -4.16 11.53 -35.23 -0.41 -4.56 16 25 C 0.09 0.74 7.50 37.33 0.28 1.02 16 26 C -0.16 -2.55 7.58 -25.92 -0.20 -2.75 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.39 10.30 7.90 -40.82 -0.32 9.98 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.40 3.74 8.73 -40.82 -0.36 3.39 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.23 7.84 -51.93 -0.41 0.82 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.27 6.02 -51.93 -0.31 0.95 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 41 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -32.58 338.61 -8.58 -41.15 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.40 Total: 11.84 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.09 Total: -6.52 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.16 Total: -54.72 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.33 Total: -14.14 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.58 -8.58 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020895940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.281 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds