Wall clock time and date at job start Tue Mar 31 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47322 * 240.00300 * 3 2 1 5 5 H 1.48507 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47127 * 119.99670 * 3 2 1 7 7 C 1.38814 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00137 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.84563 * 23.80477 * 10 9 7 12 12 C 1.53780 * 113.61729 * 154.99839 * 10 9 7 13 13 C 1.53789 * 87.07845 * 89.11852 * 12 10 9 14 14 H 1.08995 * 113.61579 * 270.80288 * 13 12 10 15 15 N 1.46497 * 113.61255 * 139.97870 * 13 12 10 16 16 C 1.34782 * 119.99976 * 156.52996 * 15 13 12 17 17 O 1.21287 * 119.99443 * 359.97438 * 16 15 13 18 18 C 1.50693 * 120.00012 * 180.02562 * 16 15 13 19 19 H 1.08999 * 115.59556 * 34.43383 * 18 16 15 20 20 C 1.53185 * 117.52243 * 248.60410 * 18 16 15 21 21 C 1.52106 * 59.77357 * 252.58144 * 20 18 16 22 22 C 1.53708 * 121.74788 * 111.08445 * 21 20 18 23 23 C 1.54695 * 103.69429 * 143.51515 * 22 21 20 24 24 O 1.44495 * 104.87233 * 23.83026 * 23 22 21 25 25 C 1.44636 * 105.46327 * 320.02667 * 24 23 22 26 26 C 1.53785 * 87.17255 * 25.38945 * 13 12 10 27 27 H 0.97000 * 120.00278 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00454 * 0.02562 * 9 7 2 29 29 H 1.08995 * 113.61417 * 334.57443 * 12 10 9 30 30 H 1.08995 * 113.68808 * 203.67417 * 12 10 9 31 31 H 0.96998 * 119.99953 * 336.53219 * 15 13 12 32 32 H 1.08995 * 117.51734 * 145.15554 * 20 18 16 33 33 H 1.08993 * 117.51984 * 0.02562 * 20 18 16 34 34 H 1.09000 * 110.58184 * 262.06918 * 22 21 20 35 35 H 1.09007 * 110.58136 * 24.96261 * 22 21 20 36 36 H 1.08997 * 110.35758 * 142.68209 * 23 22 21 37 37 H 1.09006 * 110.36055 * 264.87571 * 23 22 21 38 38 H 1.08999 * 110.42134 * 280.88501 * 25 24 23 39 39 H 1.09003 * 110.41955 * 158.42458 * 25 24 23 40 40 H 1.08999 * 113.61162 * 89.15412 * 26 13 12 41 41 H 1.08993 * 113.61625 * 220.05943 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0658 -3.5637 0.4049 12 6 1.2604 -4.8288 0.5950 13 6 0.7207 -5.0791 -0.8232 14 1 -0.1908 -4.5251 -1.0476 15 7 0.6243 -6.4986 -1.1723 16 6 -0.2330 -6.8999 -2.1318 17 8 -0.9249 -6.0858 -2.7058 18 6 -0.3326 -8.3601 -2.4905 19 1 -0.1964 -9.0583 -1.6645 20 6 0.1796 -8.7868 -3.8697 21 6 -1.3142 -8.7496 -3.5854 22 6 -2.2380 -7.7149 -4.2476 23 6 -3.5476 -8.4997 -4.4971 24 8 -3.5248 -9.5754 -3.5326 25 6 -2.1535 -10.0341 -3.4989 26 6 1.9981 -4.4014 -1.3467 27 1 -0.4850 0.8400 0.0004 28 1 0.3558 -2.3881 -0.0005 29 1 0.4940 -4.5190 1.3054 30 1 1.8861 -5.6372 0.9730 31 1 1.1774 -7.1497 -0.7128 32 1 0.6527 -9.7654 -3.9506 33 1 0.5888 -8.0112 -4.5170 34 1 -2.4165 -6.8752 -3.5759 35 1 -1.8130 -7.3693 -5.1900 36 1 -4.4122 -7.8577 -4.3288 37 1 -3.5636 -8.8981 -5.5116 38 1 -1.9478 -10.6810 -4.3518 39 1 -1.9507 -10.5587 -2.5652 40 1 2.8270 -5.0922 -1.5009 41 1 1.8264 -3.7471 -2.2013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020895942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:48 Heat of formation + Delta-G solvation = -18.559884 kcal Electronic energy + Delta-G solvation = -21720.882429 eV Core-core repulsion = 18409.721880 eV Total energy + Delta-G solvation = -3311.160548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67946 -39.27117 -37.94651 -35.83748 -34.04088 -32.63270 -30.41950 -29.71773 -27.73723 -25.21493 -25.11697 -23.75281 -22.88473 -22.33976 -20.55935 -19.72719 -18.61174 -17.41344 -17.07929 -16.36414 -16.04186 -15.78560 -15.29864 -14.90231 -14.77087 -14.41485 -13.92093 -13.60529 -13.14142 -13.05542 -12.72933 -12.58064 -12.43463 -12.08996 -11.97985 -11.69051 -11.54490 -11.11638 -10.86979 -10.79417 -10.69033 -10.28527 -10.26416 -10.18036 -9.96029 -9.83347 -9.71250 -9.27305 -8.91497 -8.69451 -7.01400 -5.79525 -3.09809 2.50997 3.18716 3.43181 3.47409 3.48056 3.48787 3.81259 4.23512 4.37394 4.55414 4.55952 4.72110 4.93005 5.02847 5.06342 5.20867 5.24036 5.26481 5.33950 5.34562 5.39161 5.46844 5.51472 5.63526 5.68548 5.85743 5.86733 5.98697 6.07877 6.15957 6.30766 6.42801 6.58244 6.63031 6.72396 6.79002 7.03026 7.66403 7.69088 8.38160 8.38864 9.49222 10.05459 10.39485 11.42557 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.003144 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.376211 B = 8902.399863 C = 9385.297856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.164 4.164 13 C 0.125 3.875 14 H 0.112 0.888 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.532 6.532 18 C -0.174 4.174 19 H 0.124 0.876 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.130 4.130 23 C 0.044 3.956 24 O -0.375 6.375 25 C 0.083 3.917 26 C -0.183 4.183 27 H 0.257 0.743 28 H 0.386 0.614 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -22.211 -6.205 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.204 4.204 13 C 0.022 3.978 14 H 0.130 0.870 15 N -0.362 5.362 16 C 0.325 3.675 17 O -0.409 6.409 18 C -0.195 4.195 19 H 0.142 0.858 20 C -0.172 4.172 21 C -0.131 4.131 22 C -0.167 4.167 23 C -0.032 4.032 24 O -0.293 6.293 25 C 0.006 3.994 26 C -0.226 4.226 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.722 -21.488 -6.469 22.452 hybrid contribution 0.685 0.575 0.098 0.900 sum -0.037 -20.913 -6.371 21.862 Atomic orbital electron populations 1.69655 1.05157 1.26002 1.56946 1.24785 0.95534 0.97838 1.02548 0.86236 0.78516 0.83353 0.77867 1.21177 1.21646 1.21185 1.19224 0.91075 0.83912 1.43588 0.90979 1.42192 1.05766 0.99403 1.87026 1.20943 0.95236 0.85421 0.92546 0.91378 1.23892 1.00764 0.99967 0.95805 1.22646 0.99726 0.79498 0.95961 0.86976 1.46105 1.41468 1.09830 1.38818 1.19618 0.79561 0.88687 0.79631 1.90626 1.43294 1.54708 1.52262 1.22249 1.07098 0.95570 0.94555 0.85823 1.22901 0.95177 1.03213 0.95869 1.22138 0.91883 0.98194 1.00836 1.22739 0.93138 0.98863 1.01963 1.23525 0.99077 0.88452 0.92153 1.89158 1.26287 1.51854 1.62019 1.22787 0.81189 0.93395 1.02054 1.24339 0.96238 0.99721 1.02298 0.93292 0.77973 0.90858 0.90326 0.77021 0.87497 0.87766 0.86547 0.90496 0.88994 0.92562 0.91460 0.89061 0.91327 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.69 5.31 -52.55 -0.28 -17.97 16 10 C 0.17 3.34 4.57 -67.03 -0.31 3.03 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 C -0.16 -2.58 7.58 -25.91 -0.20 -2.78 16 13 C 0.13 2.06 4.09 -67.11 -0.27 1.78 16 14 H 0.11 2.24 7.50 -51.93 -0.39 1.85 16 15 N -0.71 -9.24 5.36 -53.01 -0.28 -9.52 16 16 C 0.54 7.59 7.61 -10.99 -0.08 7.50 16 17 O -0.53 -9.62 12.96 5.55 0.07 -9.55 16 18 C -0.17 -1.75 6.07 -92.12 -0.56 -2.31 16 19 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 20 C -0.13 -1.14 10.01 -27.09 -0.27 -1.41 16 21 C -0.13 -1.32 2.50 -154.69 -0.39 -1.71 16 22 C -0.13 -1.54 5.96 -25.47 -0.15 -1.69 16 23 C 0.04 0.47 7.65 38.05 0.29 0.76 16 24 O -0.37 -4.49 11.65 -35.23 -0.41 -4.90 16 25 C 0.08 0.75 7.44 37.51 0.28 1.03 16 26 C -0.18 -3.21 7.69 -25.83 -0.20 -3.41 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.39 10.37 7.90 -40.82 -0.32 10.05 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.40 3.80 8.71 -40.82 -0.36 3.45 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.75 5.47 -51.93 -0.28 1.47 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -32.76 337.33 -8.61 -41.37 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.39 Total: 12.29 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.10 Total: -6.60 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.16 Total: -55.04 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.34 Total: -14.46 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.76 -8.61 -41.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020895942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.814 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds