Wall clock time and date at job start Tue Mar 31 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47322 * 240.00300 * 3 2 1 5 5 H 1.48507 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47127 * 119.99670 * 3 2 1 7 7 C 1.38814 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00137 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.84563 * 23.80477 * 10 9 7 12 12 C 1.53780 * 113.61729 * 154.99839 * 10 9 7 13 13 C 1.53789 * 87.07845 * 89.11852 * 12 10 9 14 14 H 1.08995 * 113.61579 * 270.80288 * 13 12 10 15 15 N 1.46497 * 113.61255 * 139.97870 * 13 12 10 16 16 C 1.34782 * 119.99976 * 156.52996 * 15 13 12 17 17 O 1.21287 * 119.99443 * 359.97438 * 16 15 13 18 18 C 1.50693 * 120.00012 * 180.02562 * 16 15 13 19 19 H 1.08999 * 115.59556 * 34.43383 * 18 16 15 20 20 C 1.53185 * 117.52243 * 248.60410 * 18 16 15 21 21 C 1.52106 * 59.77357 * 252.58144 * 20 18 16 22 22 C 1.53708 * 121.74788 * 111.08445 * 21 20 18 23 23 C 1.54695 * 103.69429 * 143.51515 * 22 21 20 24 24 O 1.44495 * 104.87233 * 23.83026 * 23 22 21 25 25 C 1.44636 * 105.46327 * 320.02667 * 24 23 22 26 26 C 1.53785 * 87.17255 * 25.38945 * 13 12 10 27 27 H 0.97000 * 120.00278 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00454 * 0.02562 * 9 7 2 29 29 H 1.08995 * 113.61417 * 334.57443 * 12 10 9 30 30 H 1.08995 * 113.68808 * 203.67417 * 12 10 9 31 31 H 0.96998 * 119.99953 * 336.53219 * 15 13 12 32 32 H 1.08995 * 117.51734 * 145.15554 * 20 18 16 33 33 H 1.08993 * 117.51984 * 0.02562 * 20 18 16 34 34 H 1.09000 * 110.58184 * 262.06918 * 22 21 20 35 35 H 1.09007 * 110.58136 * 24.96261 * 22 21 20 36 36 H 1.08997 * 110.35758 * 142.68209 * 23 22 21 37 37 H 1.09006 * 110.36055 * 264.87571 * 23 22 21 38 38 H 1.08999 * 110.42134 * 280.88501 * 25 24 23 39 39 H 1.09003 * 110.41955 * 158.42458 * 25 24 23 40 40 H 1.08999 * 113.61162 * 89.15412 * 26 13 12 41 41 H 1.08993 * 113.61625 * 220.05943 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0658 -3.5637 0.4049 12 6 1.2604 -4.8288 0.5950 13 6 0.7207 -5.0791 -0.8232 14 1 -0.1908 -4.5251 -1.0476 15 7 0.6243 -6.4986 -1.1723 16 6 -0.2330 -6.8999 -2.1318 17 8 -0.9249 -6.0858 -2.7058 18 6 -0.3326 -8.3601 -2.4905 19 1 -0.1964 -9.0583 -1.6645 20 6 0.1796 -8.7868 -3.8697 21 6 -1.3142 -8.7496 -3.5854 22 6 -2.2380 -7.7149 -4.2476 23 6 -3.5476 -8.4997 -4.4971 24 8 -3.5248 -9.5754 -3.5326 25 6 -2.1535 -10.0341 -3.4989 26 6 1.9981 -4.4014 -1.3467 27 1 -0.4850 0.8400 0.0004 28 1 0.3558 -2.3881 -0.0005 29 1 0.4940 -4.5190 1.3054 30 1 1.8861 -5.6372 0.9730 31 1 1.1774 -7.1497 -0.7128 32 1 0.6527 -9.7654 -3.9506 33 1 0.5888 -8.0112 -4.5170 34 1 -2.4165 -6.8752 -3.5759 35 1 -1.8130 -7.3693 -5.1900 36 1 -4.4122 -7.8577 -4.3288 37 1 -3.5636 -8.8981 -5.5116 38 1 -1.9478 -10.6810 -4.3518 39 1 -1.9507 -10.5587 -2.5652 40 1 2.8270 -5.0922 -1.5009 41 1 1.8264 -3.7471 -2.2013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020895942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:47 Heat of formation + Delta-G solvation = -42.604465 kcal Electronic energy + Delta-G solvation = -21721.925080 eV Core-core repulsion = 18409.721880 eV Total energy + Delta-G solvation = -3312.203199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64209 -40.42619 -39.19234 -36.72482 -35.72576 -34.24286 -31.74774 -31.19918 -28.51376 -26.62360 -26.49848 -25.40577 -23.80744 -23.57238 -21.58289 -20.72131 -19.95521 -19.36971 -18.12985 -17.47599 -16.86993 -16.83241 -16.62990 -16.18652 -15.93579 -15.80765 -15.36952 -15.09960 -14.42081 -14.37206 -13.90826 -13.58094 -13.50104 -13.30657 -13.23967 -13.18509 -12.77153 -12.60328 -12.43174 -12.23389 -11.90544 -11.80937 -11.72163 -11.46525 -11.34351 -11.10966 -10.89387 -10.68492 -10.36460 -9.94958 -9.04858 -7.97050 -5.27227 1.46090 1.48607 1.49959 1.55870 2.16356 2.54278 2.67854 3.04432 3.34650 3.44717 3.59549 3.63274 3.76460 3.85667 3.90120 3.94039 4.09277 4.25525 4.28726 4.34034 4.47686 4.52831 4.69125 4.74766 4.78102 4.81132 4.82071 4.85257 4.96401 4.98788 5.06895 5.15160 5.21054 5.27104 5.41309 5.50989 5.71481 5.81882 6.25082 6.64002 7.29530 7.34807 8.05807 8.27120 9.26309 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.003144 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.376211 B = 8902.399863 C = 9385.297856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.150 3.850 11 H 0.079 0.921 12 C -0.138 4.138 13 C 0.132 3.868 14 H 0.066 0.934 15 N -0.697 5.697 16 C 0.528 3.472 17 O -0.582 6.582 18 C -0.175 4.175 19 H 0.159 0.841 20 C -0.110 4.110 21 C -0.143 4.143 22 C -0.134 4.134 23 C 0.047 3.953 24 O -0.400 6.400 25 C 0.084 3.916 26 C -0.169 4.169 27 H 0.251 0.749 28 H 0.371 0.629 29 H 0.059 0.941 30 H 0.127 0.873 31 H 0.418 0.582 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -25.321 -5.976 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.378 4.378 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.039 3.961 11 H 0.097 0.903 12 C -0.178 4.178 13 C 0.027 3.973 14 H 0.084 0.916 15 N -0.348 5.348 16 C 0.317 3.683 17 O -0.462 6.462 18 C -0.196 4.196 19 H 0.177 0.823 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.172 4.172 23 C -0.029 4.029 24 O -0.319 6.319 25 C 0.007 3.993 26 C -0.211 4.211 27 H 0.060 0.940 28 H 0.202 0.798 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.256 0.744 32 H 0.164 0.836 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.643 -24.679 -6.222 25.504 hybrid contribution -0.005 1.478 -0.010 1.478 sum 1.638 -23.201 -6.233 24.080 Atomic orbital electron populations 1.69836 1.06857 1.26234 1.59338 1.25658 0.96374 1.01455 1.03570 0.85155 0.77123 0.78804 0.78339 1.20400 1.22415 1.19860 1.19692 0.91710 0.85033 1.41339 0.89952 1.42401 1.05299 1.00954 1.87516 1.21292 0.95773 0.84558 0.94441 0.90314 1.23735 1.00081 0.99239 0.94702 1.22148 0.97344 0.81219 0.96612 0.91598 1.45860 1.41653 1.08589 1.38737 1.20455 0.78605 0.90385 0.78898 1.90639 1.45084 1.56593 1.53920 1.22311 1.07942 0.92929 0.96409 0.82325 1.23023 0.93568 1.04472 0.93667 1.22223 0.92798 0.98139 1.01245 1.22624 0.94829 0.98553 1.01174 1.23533 0.98118 0.88241 0.93041 1.89122 1.28280 1.52055 1.62487 1.23004 0.79343 0.92834 1.04070 1.24190 0.97995 0.99478 0.99463 0.94028 0.79756 0.92228 0.85488 0.74404 0.83570 0.89206 0.90425 0.90764 0.89494 0.90445 0.89161 0.87244 0.87589 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.75 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.25 -13.83 9.97 84.03 0.84 -12.99 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.72 -37.29 5.31 -320.17 -1.70 -38.99 16 10 C 0.15 5.73 4.57 45.58 0.21 5.94 16 11 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 12 C -0.14 -4.09 7.58 31.12 0.24 -3.86 16 13 C 0.13 4.32 4.09 45.52 0.19 4.51 16 14 H 0.07 2.82 7.50 -2.39 -0.02 2.80 16 15 N -0.70 -16.83 5.36 -440.02 -2.36 -19.19 16 16 C 0.53 14.57 7.61 87.65 0.67 15.24 16 17 O -0.58 -22.21 12.96 -3.05 -0.04 -22.25 16 18 C -0.18 -3.06 6.07 -11.77 -0.07 -3.14 16 19 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 20 C -0.11 -1.50 10.01 30.36 0.30 -1.20 16 21 C -0.14 -2.64 2.50 -52.30 -0.13 -2.77 16 22 C -0.13 -3.26 5.96 31.41 0.19 -3.08 16 23 C 0.05 0.98 7.65 72.56 0.56 1.53 16 24 O -0.40 -9.10 11.65 -148.98 -1.74 -10.83 16 25 C 0.08 1.27 7.44 72.21 0.54 1.81 16 26 C -0.17 -5.81 7.69 31.18 0.24 -5.57 16 27 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.37 20.98 7.90 -92.71 -0.73 20.25 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.13 2.57 8.11 -2.39 -0.02 2.55 16 31 H 0.42 6.37 8.71 -92.71 -0.81 5.57 16 32 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 2.53 5.47 -2.39 -0.01 2.52 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 1.24 8.12 -2.39 -0.02 1.22 16 40 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -76.51 337.33 0.20 -76.31 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.50 Total: 35.02 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 4.22 Total: -7.70 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.78 Total: -119.29 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.78 Total: -33.09 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.51 0.20 -76.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020895942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.702 kcal (2) G-P(sol) polarization free energy of solvation -76.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds