Wall clock time and date at job start Tue Mar 31 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47102 * 270.00018 * 3 2 1 5 5 H 1.48499 * 109.47164 * 30.00114 * 3 2 1 6 6 H 1.48501 * 109.47126 * 149.99853 * 3 2 1 7 7 C 1.38820 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99529 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99993 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99645 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85571 * 315.03434 * 10 9 7 12 12 C 1.53788 * 113.61199 * 86.22964 * 10 9 7 13 13 C 1.53782 * 87.08112 * 89.11656 * 12 10 9 14 14 H 1.08996 * 113.61402 * 140.06584 * 13 12 10 15 15 N 1.46507 * 113.61083 * 270.88393 * 13 12 10 16 16 C 1.34776 * 119.99825 * 201.65064 * 15 13 12 17 17 O 1.21287 * 119.99862 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99710 * 179.97438 * 16 15 13 19 19 H 1.08996 * 115.59331 * 325.82270 * 18 16 15 20 20 C 1.53191 * 117.52028 * 111.64608 * 18 16 15 21 21 C 1.52108 * 59.77172 * 107.41625 * 20 18 16 22 22 C 1.53708 * 121.74066 * 248.89917 * 21 20 18 23 23 C 1.54693 * 103.82707 * 216.44602 * 22 21 20 24 24 O 1.44741 * 104.75196 * 336.33406 * 23 22 21 25 25 C 1.44644 * 105.56057 * 39.80241 * 24 23 22 26 26 C 1.53776 * 87.08277 * 25.43226 * 13 12 10 27 27 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00138 * 0.02562 * 9 7 2 29 29 H 1.09002 * 113.61310 * 334.56129 * 12 10 9 30 30 H 1.09003 * 113.61145 * 203.66330 * 12 10 9 31 31 H 0.97000 * 120.00046 * 21.64413 * 15 13 12 32 32 H 1.09001 * 117.52125 * 359.97438 * 20 18 16 33 33 H 1.08996 * 117.51705 * 214.84319 * 20 18 16 34 34 H 1.09003 * 110.58245 * 335.07714 * 22 21 20 35 35 H 1.09006 * 110.58059 * 97.81983 * 22 21 20 36 36 H 1.09000 * 110.36330 * 95.07463 * 23 22 21 37 37 H 1.09001 * 110.35903 * 217.38298 * 23 22 21 38 38 H 1.08999 * 110.41326 * 201.65992 * 25 24 23 39 39 H 1.09001 * 110.42026 * 79.19933 * 25 24 23 40 40 H 1.09000 * 113.61631 * 89.11436 * 26 13 12 41 41 H 1.09000 * 113.61065 * 220.02264 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.8852 -3.6681 -0.7093 12 6 2.4463 -4.1439 1.4066 13 6 1.0892 -4.8662 1.4455 14 1 1.1336 -5.8545 1.9030 15 7 0.0007 -4.0418 1.9763 16 6 -1.1058 -4.6270 2.4760 17 8 -1.2005 -5.8361 2.4857 18 6 -2.2252 -3.7789 3.0226 19 1 -1.9193 -2.8563 3.5158 20 6 -3.5450 -3.7620 2.2450 21 6 -3.4477 -4.4981 3.5725 22 6 -3.5146 -6.0316 3.6536 23 6 -4.2941 -6.2989 4.9628 24 8 -4.0982 -5.1059 5.7586 25 6 -4.1807 -4.0012 4.8285 26 6 1.1484 -4.8934 -0.0909 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.5346 -3.3406 2.1381 30 1 3.3012 -4.8201 1.4138 31 1 0.0764 -3.0747 1.9683 32 1 -3.6030 -4.3639 1.3381 33 1 -4.1068 -2.8282 2.2269 34 1 -4.0531 -6.4375 2.7973 35 1 -2.5123 -6.4564 3.7109 36 1 -5.3536 -6.4428 4.7507 37 1 -3.8873 -7.1708 5.4751 38 1 -3.6821 -3.1222 5.2371 39 1 -5.2217 -3.7758 4.5971 40 1 1.6485 -5.7744 -0.4931 41 1 0.1888 -4.6951 -0.5683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022948154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:50 Heat of formation + Delta-G solvation = -35.534151 kcal Electronic energy + Delta-G solvation = -22410.577948 eV Core-core repulsion = 19098.681341 eV Total energy + Delta-G solvation = -3311.896608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67097 -40.51434 -39.12393 -36.68741 -35.44663 -34.05227 -31.80100 -31.19492 -28.50323 -26.75875 -26.34288 -25.50312 -23.74632 -23.47761 -21.49043 -20.64341 -19.95789 -19.21603 -18.17835 -17.21706 -16.86068 -16.76424 -16.51285 -16.15385 -16.05831 -15.79417 -15.36988 -15.10972 -14.87275 -14.33930 -13.86464 -13.52604 -13.32591 -13.25421 -13.17664 -13.07965 -12.78840 -12.54439 -12.40913 -12.12788 -11.90711 -11.88759 -11.70382 -11.45550 -11.13801 -11.08187 -10.83512 -10.68687 -10.37951 -9.91009 -8.98394 -7.93058 -5.21528 1.47779 1.50197 1.51379 1.58790 2.16668 2.57339 2.67528 3.03666 3.38925 3.43393 3.60835 3.68090 3.76960 3.87744 3.93188 3.99571 4.09712 4.21447 4.28868 4.40241 4.49226 4.50746 4.66276 4.73315 4.81383 4.84580 4.84949 4.89431 4.94904 4.97479 5.06450 5.07324 5.23312 5.32618 5.43298 5.56282 5.76799 5.81480 6.29976 6.61480 7.26430 7.36402 8.09292 8.34196 9.29322 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.004560 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.146357 B = 6139.300649 C = 7158.014127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.145 3.855 11 H 0.055 0.945 12 C -0.163 4.163 13 C 0.125 3.875 14 H 0.093 0.907 15 N -0.699 5.699 16 C 0.541 3.459 17 O -0.570 6.570 18 C -0.190 4.190 19 H 0.130 0.870 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.128 4.128 23 C 0.047 3.953 24 O -0.399 6.399 25 C 0.082 3.918 26 C -0.149 4.149 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.409 0.591 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 -10.305 6.586 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.035 3.965 11 H 0.073 0.927 12 C -0.204 4.204 13 C 0.020 3.980 14 H 0.111 0.889 15 N -0.349 5.349 16 C 0.329 3.671 17 O -0.451 6.451 18 C -0.210 4.210 19 H 0.148 0.852 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.165 4.165 23 C -0.030 4.030 24 O -0.318 6.318 25 C 0.006 3.994 26 C -0.188 4.188 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.246 0.754 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.263 -11.008 6.817 14.383 hybrid contribution 0.287 1.625 -0.471 1.716 sum -5.976 -9.383 6.345 12.807 Atomic orbital electron populations 1.69776 1.06202 1.26011 1.59154 1.25398 0.96281 1.00450 1.03579 0.85253 0.77817 0.80172 0.77137 1.21943 1.22331 1.19754 1.19545 0.91483 0.84924 1.41349 0.90756 1.42336 1.05279 1.00312 1.88008 1.21461 0.94533 0.85285 0.95189 0.92740 1.23958 0.96164 1.00041 1.00196 1.21772 0.87194 0.94715 0.94339 0.88865 1.45989 1.17233 1.11144 1.60556 1.20015 0.82791 0.87782 0.76487 1.90526 1.80642 1.15283 1.58628 1.22240 0.89386 1.01974 1.07447 0.85180 1.22955 0.95181 1.03030 0.94316 1.22203 0.98177 0.95736 0.96631 1.22631 1.02921 0.92583 0.98396 1.23646 1.00065 0.88549 0.90695 1.89150 1.93909 1.16442 1.32306 1.22952 1.00212 0.90188 0.86098 1.23687 0.99940 0.99111 0.96081 0.93962 0.79089 0.92591 0.86890 0.75416 0.88516 0.85327 0.90154 0.89443 0.90420 0.88495 0.88317 0.89106 0.86400 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.48 13.06 21.65 0.28 -54.20 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 3 Si 0.97 43.95 29.55 68.60 2.03 45.97 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.24 -12.51 9.99 84.04 0.84 -11.67 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.72 -33.38 4.41 -320.43 -1.41 -34.80 16 10 C 0.14 5.34 4.54 45.52 0.21 5.55 16 11 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 12 C -0.16 -5.19 7.61 31.12 0.24 -4.95 16 13 C 0.13 4.04 4.28 45.52 0.19 4.24 16 14 H 0.09 2.94 7.55 -2.39 -0.02 2.92 16 15 N -0.70 -24.31 4.95 -440.03 -2.18 -26.48 16 16 C 0.54 18.42 7.61 87.66 0.67 19.08 16 17 O -0.57 -21.15 12.99 -3.05 -0.04 -21.19 16 18 C -0.19 -5.42 6.07 -11.77 -0.07 -5.49 16 19 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 20 C -0.12 -2.85 10.01 30.36 0.30 -2.54 16 21 C -0.13 -3.12 2.50 -52.30 -0.13 -3.25 16 22 C -0.13 -3.22 5.95 31.41 0.19 -3.03 16 23 C 0.05 0.99 7.68 72.56 0.56 1.55 16 24 O -0.40 -10.19 11.66 -148.98 -1.74 -11.93 16 25 C 0.08 1.76 7.45 72.21 0.54 2.29 16 26 C -0.15 -4.74 7.57 31.12 0.24 -4.50 16 27 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.38 18.67 6.97 -92.71 -0.65 18.02 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.41 15.63 7.18 -92.71 -0.67 14.96 16 32 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.72 5.47 -2.38 -0.01 2.70 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.10 1.98 8.12 -2.39 -0.02 1.96 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.75 333.81 0.91 -60.84 By element: Atomic # 1 Polarization: 47.73 SS G_CDS: -0.27 Total: 47.47 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.23 Total: -5.70 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.31 Total: -115.48 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.78 Total: -33.11 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.75 0.91 -60.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022948154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.310 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds