Wall clock time and date at job start Tue Mar 31 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48504 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99449 * 3 2 1 6 6 H 1.48502 * 109.47462 * 60.00017 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00417 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00369 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84785 * 336.20598 * 10 9 7 12 12 C 1.53784 * 113.68880 * 107.46841 * 10 9 7 13 13 C 1.53781 * 87.07940 * 139.99851 * 12 10 9 14 14 H 1.08993 * 113.69211 * 89.13090 * 13 12 10 15 15 N 1.46506 * 113.61096 * 220.02177 * 13 12 10 16 16 C 1.34779 * 119.99461 * 252.49490 * 15 13 12 17 17 O 1.21275 * 120.00183 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99413 * 180.02562 * 16 15 13 19 19 H 1.08996 * 115.56378 * 34.38225 * 18 16 15 20 20 C 1.53186 * 117.51900 * 248.60604 * 18 16 15 21 21 C 1.52129 * 59.77560 * 252.58226 * 20 18 16 22 22 C 1.54042 * 121.47163 * 249.14676 * 21 20 18 23 23 C 1.55186 * 101.82669 * 195.69662 * 22 21 20 24 24 O 1.44453 * 103.63180 * 36.33180 * 23 22 21 25 25 C 1.43988 * 107.04688 * 320.42900 * 24 23 22 26 26 C 1.53776 * 113.61914 * 205.00512 * 10 9 7 27 27 H 0.96998 * 119.99813 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00108 * 0.02562 * 9 7 2 29 29 H 1.08993 * 113.61455 * 25.44744 * 12 10 9 30 30 H 1.09001 * 113.61130 * 254.54388 * 12 10 9 31 31 H 0.96995 * 119.99814 * 72.49438 * 15 13 12 32 32 H 1.09004 * 117.52164 * 0.02562 * 20 18 16 33 33 H 1.09000 * 117.51842 * 145.10553 * 20 18 16 34 34 H 1.09002 * 110.95652 * 313.83226 * 22 21 20 35 35 H 1.08999 * 110.95703 * 77.56251 * 22 21 20 36 36 H 1.08991 * 110.59536 * 277.78988 * 23 22 21 37 37 H 1.09003 * 110.71942 * 154.92824 * 23 22 21 38 38 H 1.09005 * 109.97608 * 266.93657 * 25 24 23 39 39 H 1.09004 * 110.00395 * 145.68518 * 25 24 23 40 40 H 1.09000 * 113.61218 * 105.38851 * 26 10 9 41 41 H 1.09003 * 113.61337 * 334.48420 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0654 -3.5640 -0.4045 12 6 2.0019 -4.4026 1.3453 13 6 1.8501 -5.6979 0.5303 14 1 2.7998 -6.1642 0.2683 15 7 0.8912 -6.6442 1.1058 16 6 1.3306 -7.7716 1.6994 17 8 2.5197 -8.0024 1.7577 18 6 0.3441 -8.7454 2.2908 19 1 -0.6039 -8.8351 1.7604 20 6 0.3183 -8.8885 3.8158 21 6 0.9020 -9.9967 2.9523 22 6 0.2002 -11.3608 2.8117 23 6 1.3311 -12.2402 2.2149 24 8 2.5235 -11.7495 2.8660 25 6 2.4014 -10.3171 2.9468 26 6 1.2598 -4.8290 -0.5928 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 1.1246 -4.1581 1.9440 30 1 2.9310 -4.3502 1.9129 31 1 -0.0599 -6.4594 1.0595 32 1 1.0146 -8.2781 4.3908 33 1 -0.6467 -9.0725 4.2881 34 1 -0.1156 -11.7388 3.7840 35 1 -0.6453 -11.2954 2.1270 36 1 1.3976 -12.0991 1.1362 37 1 1.1688 -13.2913 2.4536 38 1 2.8779 -9.8535 2.0830 39 1 2.8629 -9.9547 3.8654 40 1 1.5898 -5.1209 -1.5898 41 1 0.1795 -4.7011 -0.5239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022948156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:56 Heat of formation + Delta-G solvation = -21.779507 kcal Electronic energy + Delta-G solvation = -21526.424603 eV Core-core repulsion = 18215.124441 eV Total energy + Delta-G solvation = -3311.300161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76901 -39.29843 -37.94427 -35.92861 -34.13362 -32.72975 -30.59570 -29.91911 -27.58690 -25.32737 -25.15349 -23.94367 -22.91170 -21.91503 -20.52780 -19.89684 -19.11483 -17.36338 -17.09918 -16.45391 -16.26216 -15.70330 -15.27585 -14.94984 -14.68815 -14.42468 -14.06570 -13.63918 -13.37068 -13.07344 -12.96515 -12.73075 -12.39683 -12.16920 -11.95772 -11.69390 -11.30591 -11.26842 -10.97803 -10.80801 -10.63132 -10.52873 -10.37082 -10.32235 -10.08752 -9.98829 -9.68038 -9.25297 -8.94374 -8.79164 -7.01989 -5.83489 -3.12405 2.39032 3.07854 3.40094 3.45463 3.46605 3.48311 3.76658 4.04681 4.36859 4.42703 4.55789 4.64460 4.81013 4.90493 4.99932 5.12346 5.15768 5.19724 5.32103 5.35902 5.43930 5.44199 5.53435 5.61863 5.64508 5.71243 5.82695 5.88056 6.01646 6.11909 6.21372 6.27192 6.48377 6.57256 6.69586 6.71577 7.02296 7.57729 7.66546 8.24238 8.35036 9.46550 10.02845 10.37368 11.38996 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048379 B = 0.002734 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.623299 B =10238.138263 C =10358.571563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.117 3.883 14 H 0.110 0.890 15 N -0.708 5.708 16 C 0.541 3.459 17 O -0.541 6.541 18 C -0.175 4.175 19 H 0.126 0.874 20 C -0.132 4.132 21 C -0.131 4.131 22 C -0.120 4.120 23 C 0.049 3.951 24 O -0.383 6.383 25 C 0.073 3.927 26 C -0.159 4.159 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 -22.453 4.727 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.127 0.873 15 N -0.356 5.356 16 C 0.327 3.673 17 O -0.419 6.419 18 C -0.196 4.196 19 H 0.143 0.857 20 C -0.169 4.169 21 C -0.132 4.132 22 C -0.158 4.158 23 C -0.028 4.028 24 O -0.302 6.302 25 C -0.003 4.003 26 C -0.199 4.199 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.418 -22.537 4.808 23.088 hybrid contribution -0.800 1.264 -0.063 1.497 sum -2.217 -21.273 4.745 21.908 Atomic orbital electron populations 1.69665 1.05164 1.25693 1.57587 1.24770 0.95548 0.97847 1.02749 0.86105 0.78866 0.83953 0.77199 1.20455 1.21810 1.21827 1.19362 0.91191 0.84121 1.42803 0.90916 1.42364 1.05687 0.99784 1.86982 1.21348 0.95492 0.84935 0.92625 0.90213 1.24329 1.01839 0.95101 1.00534 1.22525 0.93267 0.87432 0.95557 0.87257 1.46030 1.10638 1.21060 1.57912 1.19642 0.88518 0.81427 0.77714 1.90598 1.17033 1.75501 1.58774 1.22291 1.00969 0.98725 0.97648 0.85650 1.22926 1.03250 1.00293 0.90443 1.22141 0.97207 0.90243 1.03603 1.22645 0.98333 0.92524 1.02291 1.23499 0.83906 0.98443 0.96909 1.88912 1.40253 1.20830 1.80202 1.22977 0.92279 0.80559 1.04440 1.23868 1.01201 0.97343 0.97468 0.93485 0.78102 0.90212 0.92239 0.76533 0.87690 0.87340 0.89718 0.89993 0.92172 0.89069 0.88127 0.89847 0.91486 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.31 5.40 -52.64 -0.28 -17.60 16 10 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 11 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 12 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 13 C 0.12 1.70 4.24 -67.12 -0.28 1.41 16 14 H 0.11 1.67 7.46 -51.93 -0.39 1.29 16 15 N -0.71 -8.67 5.35 -53.01 -0.28 -8.96 16 16 C 0.54 6.91 7.61 -10.98 -0.08 6.83 16 17 O -0.54 -8.64 12.98 5.56 0.07 -8.57 16 18 C -0.18 -1.65 6.07 -92.11 -0.56 -2.21 16 19 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.13 -1.12 10.01 -27.08 -0.27 -1.39 16 21 C -0.13 -1.25 2.43 -154.68 -0.38 -1.63 16 22 C -0.12 -0.89 6.94 -25.03 -0.17 -1.07 16 23 C 0.05 0.43 7.73 38.32 0.30 0.72 16 24 O -0.38 -4.72 11.53 -35.23 -0.41 -5.13 16 25 C 0.07 0.89 6.57 37.32 0.25 1.13 16 26 C -0.16 -2.44 7.58 -25.92 -0.20 -2.63 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.38 9.87 7.92 -40.82 -0.32 9.55 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 4.02 8.73 -40.82 -0.36 3.66 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.43 5.54 -51.93 -0.29 1.15 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.85 337.55 -8.66 -40.51 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.39 Total: 10.91 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.15 Total: -6.39 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.16 Total: -53.53 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.33 Total: -13.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.85 -8.66 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022948156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.729 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds