Wall clock time and date at job start Tue Mar 31 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48504 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47295 * 299.99449 * 3 2 1 6 6 H 1.48502 * 109.47462 * 60.00017 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00417 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00369 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.84785 * 336.20598 * 10 9 7 12 12 C 1.53784 * 113.68880 * 107.46841 * 10 9 7 13 13 C 1.53781 * 87.07940 * 139.99851 * 12 10 9 14 14 H 1.08993 * 113.69211 * 89.13090 * 13 12 10 15 15 N 1.46506 * 113.61096 * 220.02177 * 13 12 10 16 16 C 1.34779 * 119.99461 * 252.49490 * 15 13 12 17 17 O 1.21275 * 120.00183 * 0.02562 * 16 15 13 18 18 C 1.50706 * 119.99413 * 180.02562 * 16 15 13 19 19 H 1.08996 * 115.56378 * 34.38225 * 18 16 15 20 20 C 1.53186 * 117.51900 * 248.60604 * 18 16 15 21 21 C 1.52129 * 59.77560 * 252.58226 * 20 18 16 22 22 C 1.54042 * 121.47163 * 249.14676 * 21 20 18 23 23 C 1.55186 * 101.82669 * 195.69662 * 22 21 20 24 24 O 1.44453 * 103.63180 * 36.33180 * 23 22 21 25 25 C 1.43988 * 107.04688 * 320.42900 * 24 23 22 26 26 C 1.53776 * 113.61914 * 205.00512 * 10 9 7 27 27 H 0.96998 * 119.99813 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00108 * 0.02562 * 9 7 2 29 29 H 1.08993 * 113.61455 * 25.44744 * 12 10 9 30 30 H 1.09001 * 113.61130 * 254.54388 * 12 10 9 31 31 H 0.96995 * 119.99814 * 72.49438 * 15 13 12 32 32 H 1.09004 * 117.52164 * 0.02562 * 20 18 16 33 33 H 1.09000 * 117.51842 * 145.10553 * 20 18 16 34 34 H 1.09002 * 110.95652 * 313.83226 * 22 21 20 35 35 H 1.08999 * 110.95703 * 77.56251 * 22 21 20 36 36 H 1.08991 * 110.59536 * 277.78988 * 23 22 21 37 37 H 1.09003 * 110.71942 * 154.92824 * 23 22 21 38 38 H 1.09005 * 109.97608 * 266.93657 * 25 24 23 39 39 H 1.09004 * 110.00395 * 145.68518 * 25 24 23 40 40 H 1.09000 * 113.61218 * 105.38851 * 26 10 9 41 41 H 1.09003 * 113.61337 * 334.48420 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0654 -3.5640 -0.4045 12 6 2.0019 -4.4026 1.3453 13 6 1.8501 -5.6979 0.5303 14 1 2.7998 -6.1642 0.2683 15 7 0.8912 -6.6442 1.1058 16 6 1.3306 -7.7716 1.6994 17 8 2.5197 -8.0024 1.7577 18 6 0.3441 -8.7454 2.2908 19 1 -0.6039 -8.8351 1.7604 20 6 0.3183 -8.8885 3.8158 21 6 0.9020 -9.9967 2.9523 22 6 0.2002 -11.3608 2.8117 23 6 1.3311 -12.2402 2.2149 24 8 2.5235 -11.7495 2.8660 25 6 2.4014 -10.3171 2.9468 26 6 1.2598 -4.8290 -0.5928 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0016 29 1 1.1246 -4.1581 1.9440 30 1 2.9310 -4.3502 1.9129 31 1 -0.0599 -6.4594 1.0595 32 1 1.0146 -8.2781 4.3908 33 1 -0.6467 -9.0725 4.2881 34 1 -0.1156 -11.7388 3.7840 35 1 -0.6453 -11.2954 2.1270 36 1 1.3976 -12.0991 1.1362 37 1 1.1688 -13.2913 2.4536 38 1 2.8779 -9.8535 2.0830 39 1 2.8629 -9.9547 3.8654 40 1 1.5898 -5.1209 -1.5898 41 1 0.1795 -4.7011 -0.5239 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022948156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:56 Heat of formation + Delta-G solvation = -44.118894 kcal Electronic energy + Delta-G solvation = -21527.393311 eV Core-core repulsion = 18215.124441 eV Total energy + Delta-G solvation = -3312.268870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67166 -40.39209 -39.14243 -36.78040 -35.77910 -34.24020 -31.85162 -31.21731 -28.45829 -26.72814 -26.50828 -25.44603 -23.61612 -23.21200 -21.54684 -20.96091 -20.27256 -19.15032 -18.20521 -17.60925 -17.05774 -16.75842 -16.33229 -16.14734 -16.02825 -15.88713 -15.18094 -14.96162 -14.63784 -14.32492 -14.03047 -13.62101 -13.47318 -13.32376 -13.17319 -13.15900 -12.86056 -12.34504 -12.22115 -12.17231 -12.06592 -11.97004 -11.76481 -11.52896 -11.47046 -11.08733 -10.91359 -10.85663 -10.24550 -9.95865 -8.99736 -7.96634 -5.24544 1.44025 1.47510 1.47909 1.57795 2.11807 2.56002 2.69520 3.01651 3.30951 3.35393 3.64773 3.68469 3.73707 3.85513 3.93276 3.96258 3.99474 4.25833 4.28817 4.30340 4.48572 4.51404 4.69721 4.75531 4.80930 4.86104 4.87523 4.88650 4.91694 4.99839 5.07368 5.09458 5.14019 5.17268 5.40150 5.51077 5.68115 5.90949 6.26244 6.58967 7.26177 7.32844 8.08131 8.31728 9.26673 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.048379 B = 0.002734 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.623299 B =10238.138263 C =10358.571563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.077 0.923 12 C -0.169 4.169 13 C 0.136 3.864 14 H 0.104 0.896 15 N -0.700 5.700 16 C 0.534 3.466 17 O -0.577 6.577 18 C -0.172 4.172 19 H 0.159 0.841 20 C -0.120 4.120 21 C -0.139 4.139 22 C -0.109 4.109 23 C 0.038 3.962 24 O -0.408 6.408 25 C 0.072 3.928 26 C -0.139 4.139 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -23.898 4.887 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.095 0.905 12 C -0.211 4.211 13 C 0.031 3.969 14 H 0.122 0.878 15 N -0.350 5.350 16 C 0.323 3.677 17 O -0.458 6.458 18 C -0.193 4.193 19 H 0.176 0.824 20 C -0.158 4.158 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.038 4.038 24 O -0.328 6.328 25 C -0.004 4.004 26 C -0.179 4.179 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.251 0.749 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.623 -24.033 4.969 24.681 hybrid contribution -0.328 1.610 -0.102 1.647 sum -2.951 -22.422 4.867 23.133 Atomic orbital electron populations 1.69800 1.06482 1.26021 1.59552 1.25529 0.96403 1.00990 1.03751 0.85118 0.78251 0.80016 0.76653 1.19216 1.21954 1.22143 1.19720 0.91526 0.85406 1.40933 0.90704 1.42500 1.05398 1.00758 1.87447 1.21669 0.95715 0.84207 0.94568 0.90510 1.24152 1.01132 0.96437 0.99409 1.22114 0.93651 0.86912 0.94252 0.87774 1.45894 1.10969 1.20535 1.57585 1.20300 0.88708 0.81672 0.77035 1.90606 1.18953 1.76264 1.59987 1.22347 1.01073 0.97428 0.98462 0.82372 1.23042 1.04168 0.98877 0.89674 1.22163 0.95704 0.91619 1.04494 1.22659 0.98135 0.90344 1.03486 1.23786 0.83273 0.99899 0.96841 1.88880 1.42405 1.20788 1.80697 1.22804 0.94339 0.80645 1.02620 1.23665 1.01047 0.94889 0.98281 0.93973 0.79150 0.90973 0.93018 0.74898 0.89161 0.84228 0.88407 0.87586 0.92274 0.87024 0.90863 0.90953 0.90035 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.54 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -35.40 5.40 -320.45 -1.73 -37.13 16 10 C 0.15 5.65 4.48 45.52 0.20 5.85 16 11 H 0.08 2.94 8.10 -2.38 -0.02 2.92 16 12 C -0.17 -5.75 7.68 31.12 0.24 -5.51 16 13 C 0.14 3.81 4.24 45.52 0.19 4.00 16 14 H 0.10 3.11 7.46 -2.39 -0.02 3.09 16 15 N -0.70 -15.87 5.35 -440.03 -2.36 -18.23 16 16 C 0.53 12.95 7.61 87.66 0.67 13.61 16 17 O -0.58 -18.53 12.98 -3.01 -0.04 -18.57 16 18 C -0.17 -2.76 6.07 -11.76 -0.07 -2.83 16 19 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 20 C -0.12 -1.72 10.01 30.37 0.30 -1.41 16 21 C -0.14 -2.37 2.43 -52.29 -0.13 -2.50 16 22 C -0.11 -1.26 6.94 31.70 0.22 -1.04 16 23 C 0.04 0.59 7.73 72.73 0.56 1.15 16 24 O -0.41 -9.97 11.53 -148.98 -1.72 -11.69 16 25 C 0.07 1.76 6.57 72.09 0.47 2.23 16 26 C -0.14 -4.06 7.58 31.12 0.24 -3.82 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.38 19.47 7.92 -92.70 -0.73 18.73 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.41 7.21 8.73 -92.71 -0.81 6.40 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.74 8.13 -2.39 -0.02 0.72 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 2.18 5.54 -2.38 -0.01 2.17 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 Total: -1.00 -70.08 337.55 0.17 -69.91 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.50 Total: 32.34 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.20 Total: -6.55 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -3.81 Total: -113.24 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.76 Total: -30.26 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.08 0.17 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022948156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.792 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds