Wall clock time and date at job start Tue Mar 31 2020 01:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00131 * 2 1 4 4 O 1.21279 * 120.00248 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00071 * 359.97438 * 3 2 1 6 6 N 1.46496 * 109.47212 * 180.02562 * 5 3 2 7 7 C 1.34598 * 126.44233 * 125.00071 * 6 5 3 8 8 N 1.31070 * 106.67842 * 179.97438 * 7 6 5 9 9 N 1.28841 * 107.99413 * 359.97438 * 8 7 6 10 10 N 1.28743 * 109.39400 * 359.73602 * 9 8 7 11 11 C 1.46501 * 119.99693 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.63629 * 181.68613 * 11 2 1 13 13 C 1.55152 * 110.87460 * 304.93555 * 11 2 1 14 14 C 1.55139 * 101.48606 * 82.76794 * 13 11 2 15 15 N 1.47419 * 104.72007 * 37.29497 * 14 13 11 16 16 C 1.36933 * 125.64851 * 155.81922 * 15 14 13 17 17 H 1.07998 * 120.00234 * 191.53467 * 16 15 14 18 18 C 1.38815 * 119.99811 * 11.52715 * 16 15 14 19 19 N 1.31620 * 119.99597 * 205.05289 * 18 16 15 20 20 Si 1.86792 * 119.99843 * 25.05311 * 18 16 15 21 21 H 1.48494 * 109.47435 * 269.99645 * 20 18 16 22 22 H 1.48503 * 109.46970 * 149.99743 * 20 18 16 23 23 H 1.48503 * 109.47199 * 30.00277 * 20 18 16 24 24 C 1.47029 * 108.70487 * 335.55471 * 15 14 13 25 25 H 1.09000 * 109.46913 * 270.00183 * 1 2 3 26 26 H 1.08996 * 109.47016 * 30.00124 * 1 2 3 27 27 H 1.08996 * 109.47062 * 150.00253 * 1 2 3 28 28 H 1.09007 * 109.47124 * 300.00173 * 5 3 2 29 29 H 1.08997 * 109.47345 * 59.99617 * 5 3 2 30 30 H 1.08000 * 126.65924 * 0.03249 * 7 6 5 31 31 H 1.08998 * 111.00478 * 201.00641 * 13 11 2 32 32 H 1.09003 * 111.00479 * 324.86082 * 13 11 2 33 33 H 1.09000 * 110.49405 * 278.45642 * 14 13 11 34 34 H 1.08999 * 110.34175 * 156.06087 * 14 13 11 35 35 H 0.96994 * 120.00519 * 354.67483 * 19 18 16 36 36 H 1.09004 * 109.88261 * 120.70771 * 24 15 14 37 37 H 1.09003 * 109.87972 * 241.71436 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.3850 4.5967 -0.8885 8 7 3.3794 5.3695 -0.5255 9 7 3.9145 4.8601 0.5302 10 7 3.2835 3.7854 0.8532 11 6 2.1975 -1.2688 0.0006 12 1 3.2726 -1.0917 0.0305 13 6 1.7549 -2.1621 1.1894 14 6 0.4727 -2.8231 0.6186 15 7 0.7774 -3.0653 -0.8033 16 6 0.1850 -4.0114 -1.5965 17 1 0.6002 -4.2393 -2.5671 18 6 -0.9492 -4.6776 -1.1530 19 7 -1.2376 -5.8719 -1.6251 20 14 -2.0660 -3.8791 0.1136 21 1 -1.6151 -4.2544 1.4778 22 1 -3.4608 -4.3451 -0.0925 23 1 -2.0100 -2.4028 -0.0377 24 6 1.8182 -2.1187 -1.2304 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.7591 2.5298 -0.8909 29 1 0.7584 2.5303 0.8891 30 1 1.7302 4.7431 -1.7347 31 1 2.5140 -2.9093 1.4204 32 1 1.5235 -1.5582 2.0669 33 1 -0.3790 -2.1497 0.7146 34 1 0.2724 -3.7649 1.1294 35 1 -0.7023 -6.2539 -2.3380 36 1 2.6916 -2.6644 -1.5876 37 1 1.4328 -1.4768 -2.0226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032899976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:51 Heat of formation + Delta-G solvation = 138.116870 kcal Electronic energy + Delta-G solvation = -22307.614970 eV Core-core repulsion = 18932.000843 eV Total energy + Delta-G solvation = -3375.614127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.35152 -40.46066 -38.10935 -35.63720 -34.91947 -32.68473 -32.45770 -30.26000 -29.16442 -28.59200 -26.65515 -24.20596 -24.01178 -23.47851 -21.51815 -20.65620 -19.15507 -18.21459 -17.80607 -17.52675 -16.86348 -16.34581 -16.02456 -15.88547 -15.13285 -14.57349 -14.11344 -13.69150 -13.53958 -13.24597 -12.98044 -12.79262 -12.60538 -12.28188 -12.17485 -11.95372 -11.45346 -11.37170 -11.33576 -11.26090 -11.13203 -10.96280 -10.57896 -10.19755 -9.97061 -9.74212 -9.38284 -8.79861 -8.62556 -7.23054 -6.44845 -3.33246 1.02808 1.56823 2.09833 2.17321 2.69900 3.26120 3.32003 3.51827 3.76610 3.96774 3.98316 4.34387 4.45995 4.55156 4.81640 4.91010 4.95720 5.10715 5.19031 5.30947 5.36724 5.44543 5.48009 5.67076 5.74136 5.79892 5.82545 6.06726 6.12274 6.37553 6.39519 6.56008 6.60824 7.12501 7.56540 7.78241 8.21712 8.42939 8.91211 9.45254 10.11298 11.03528 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039584 B = 0.004044 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.179732 B = 6921.794244 C = 7089.204858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.588 5.588 3 C 0.501 3.499 4 O -0.517 6.517 5 C 0.096 3.904 6 N -0.299 5.299 7 C 0.159 3.841 8 N -0.308 5.308 9 N -0.081 5.081 10 N -0.062 5.062 11 C 0.126 3.874 12 H 0.108 0.892 13 C -0.139 4.139 14 C 0.095 3.905 15 N -0.606 5.606 16 C -0.332 4.332 17 H 0.075 0.925 18 C -0.020 4.020 19 N -0.918 5.918 20 Si 1.067 2.933 21 H -0.294 1.294 22 H -0.299 1.299 23 H -0.288 1.288 24 C 0.128 3.872 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.235 0.765 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.041 0.959 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 16.720 3.330 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.321 5.321 3 C 0.286 3.714 4 O -0.392 6.392 5 C -0.030 4.030 6 N -0.101 5.101 7 C -0.139 4.139 8 N -0.156 5.156 9 N -0.075 5.075 10 N -0.049 5.049 11 C 0.023 3.977 12 H 0.126 0.874 13 C -0.178 4.178 14 C -0.030 4.030 15 N -0.335 5.335 16 C -0.459 4.459 17 H 0.093 0.907 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.899 3.101 21 H -0.222 1.222 22 H -0.226 1.226 23 H -0.215 1.215 24 C 0.001 3.999 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.251 0.749 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.170 16.765 4.985 17.491 hybrid contribution 0.274 -0.238 -1.645 1.685 sum 0.444 16.527 3.340 16.867 Atomic orbital electron populations 1.22310 0.78790 1.04969 1.02658 1.47761 1.07430 1.05243 1.71708 1.20061 0.88242 0.84881 0.78256 1.90826 1.13050 1.86533 1.48816 1.22112 0.89576 0.82871 1.08393 1.48198 1.23322 1.19561 1.19013 1.27736 1.00611 0.86744 0.98846 1.74978 1.07190 1.24738 1.08672 1.78670 1.19375 1.01800 1.07682 1.79022 0.98122 1.13344 1.14370 1.22228 0.96977 0.81523 0.96962 0.87389 1.23122 0.99598 0.98567 0.96497 1.22294 0.95042 0.99005 0.86612 1.44829 1.44381 1.38712 1.05529 1.20012 1.09264 1.14653 1.01975 0.90694 1.25872 0.96993 0.95531 1.03654 1.70887 1.45957 1.11686 1.27365 0.83823 0.76302 0.74722 0.75245 1.22150 1.22643 1.21517 1.21657 0.93306 0.91110 0.93821 0.91873 0.91600 0.87499 0.83877 0.84646 0.74871 0.89771 0.91070 0.94563 0.92020 0.92549 0.94124 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.34 59.85 0.50 1.07 16 2 N -0.59 -7.28 2.83 -171.84 -0.49 -7.77 16 3 C 0.50 6.01 7.69 -10.99 -0.08 5.93 16 4 O -0.52 -8.56 15.08 5.56 0.08 -8.48 16 5 C 0.10 0.67 5.52 -5.20 -0.03 0.64 16 6 N -0.30 -3.07 3.19 -63.74 -0.20 -3.27 16 7 C 0.16 1.38 12.79 -90.39 -1.16 0.23 16 8 N -0.31 -4.00 12.36 29.59 0.37 -3.63 16 9 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 10 N -0.06 -0.89 12.31 60.35 0.74 -0.15 16 11 C 0.13 1.91 3.57 -66.10 -0.24 1.67 16 12 H 0.11 1.69 6.99 -51.93 -0.36 1.33 16 13 C -0.14 -2.10 6.55 -24.46 -0.16 -2.26 16 14 C 0.10 1.80 3.82 -2.41 -0.01 1.79 16 15 N -0.61 -13.31 2.86 -169.93 -0.49 -13.80 16 16 C -0.33 -8.82 10.44 -15.06 -0.16 -8.98 16 17 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 18 C -0.02 -0.54 5.42 -17.43 -0.09 -0.64 16 19 N -0.92 -27.44 13.70 55.49 0.76 -26.68 16 20 Si 1.07 24.13 24.69 -169.99 -4.20 19.93 16 21 H -0.29 -6.35 6.58 56.52 0.37 -5.98 16 22 H -0.30 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -5.68 5.85 56.52 0.33 -5.35 16 24 C 0.13 2.34 6.24 -3.06 -0.02 2.32 16 25 H 0.06 0.57 7.99 -51.93 -0.41 0.15 16 26 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 27 H 0.11 1.55 4.85 -51.93 -0.25 1.29 16 28 H 0.14 0.38 7.34 -51.93 -0.38 0.00 16 29 H 0.14 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.24 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.65 3.05 -51.93 -0.16 0.50 16 34 H 0.06 1.30 6.11 -51.93 -0.32 0.98 16 35 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.60 8.05 -51.93 -0.42 0.18 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -36.13 298.57 -3.98 -40.12 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.43 Total: -2.12 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.45 Total: 1.78 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 1.50 Total: -55.72 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.20 Total: 19.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -36.13 -3.98 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032899976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.232 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds