Wall clock time and date at job start Tue Mar 31 2020 01:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00131 * 2 1 4 4 O 1.21279 * 120.00248 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00071 * 359.97438 * 3 2 1 6 6 N 1.46496 * 109.47212 * 180.02562 * 5 3 2 7 7 C 1.34598 * 126.44233 * 125.00071 * 6 5 3 8 8 N 1.31070 * 106.67842 * 179.97438 * 7 6 5 9 9 N 1.28841 * 107.99413 * 359.97438 * 8 7 6 10 10 N 1.28743 * 109.39400 * 359.73602 * 9 8 7 11 11 C 1.46501 * 119.99693 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.63629 * 181.68613 * 11 2 1 13 13 C 1.55152 * 110.87460 * 304.93555 * 11 2 1 14 14 C 1.55139 * 101.48606 * 82.76794 * 13 11 2 15 15 N 1.47419 * 104.72007 * 37.29497 * 14 13 11 16 16 C 1.36933 * 125.64851 * 155.81922 * 15 14 13 17 17 H 1.07998 * 120.00234 * 191.53467 * 16 15 14 18 18 C 1.38815 * 119.99811 * 11.52715 * 16 15 14 19 19 N 1.31620 * 119.99597 * 205.05289 * 18 16 15 20 20 Si 1.86792 * 119.99843 * 25.05311 * 18 16 15 21 21 H 1.48494 * 109.47435 * 269.99645 * 20 18 16 22 22 H 1.48503 * 109.46970 * 149.99743 * 20 18 16 23 23 H 1.48503 * 109.47199 * 30.00277 * 20 18 16 24 24 C 1.47029 * 108.70487 * 335.55471 * 15 14 13 25 25 H 1.09000 * 109.46913 * 270.00183 * 1 2 3 26 26 H 1.08996 * 109.47016 * 30.00124 * 1 2 3 27 27 H 1.08996 * 109.47062 * 150.00253 * 1 2 3 28 28 H 1.09007 * 109.47124 * 300.00173 * 5 3 2 29 29 H 1.08997 * 109.47345 * 59.99617 * 5 3 2 30 30 H 1.08000 * 126.65924 * 0.03249 * 7 6 5 31 31 H 1.08998 * 111.00478 * 201.00641 * 13 11 2 32 32 H 1.09003 * 111.00479 * 324.86082 * 13 11 2 33 33 H 1.09000 * 110.49405 * 278.45642 * 14 13 11 34 34 H 1.08999 * 110.34175 * 156.06087 * 14 13 11 35 35 H 0.96994 * 120.00519 * 354.67483 * 19 18 16 36 36 H 1.09004 * 109.88261 * 120.70771 * 24 15 14 37 37 H 1.09003 * 109.87972 * 241.71436 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.3850 4.5967 -0.8885 8 7 3.3794 5.3695 -0.5255 9 7 3.9145 4.8601 0.5302 10 7 3.2835 3.7854 0.8532 11 6 2.1975 -1.2688 0.0006 12 1 3.2726 -1.0917 0.0305 13 6 1.7549 -2.1621 1.1894 14 6 0.4727 -2.8231 0.6186 15 7 0.7774 -3.0653 -0.8033 16 6 0.1850 -4.0114 -1.5965 17 1 0.6002 -4.2393 -2.5671 18 6 -0.9492 -4.6776 -1.1530 19 7 -1.2376 -5.8719 -1.6251 20 14 -2.0660 -3.8791 0.1136 21 1 -1.6151 -4.2544 1.4778 22 1 -3.4608 -4.3451 -0.0925 23 1 -2.0100 -2.4028 -0.0377 24 6 1.8182 -2.1187 -1.2304 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.7591 2.5298 -0.8909 29 1 0.7584 2.5303 0.8891 30 1 1.7302 4.7431 -1.7347 31 1 2.5140 -2.9093 1.4204 32 1 1.5235 -1.5582 2.0669 33 1 -0.3790 -2.1497 0.7146 34 1 0.2724 -3.7649 1.1294 35 1 -0.7023 -6.2539 -2.3380 36 1 2.6916 -2.6644 -1.5876 37 1 1.4328 -1.4768 -2.0226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032899976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:50 Heat of formation + Delta-G solvation = 109.625866 kcal Electronic energy + Delta-G solvation = -22308.850432 eV Core-core repulsion = 18932.000843 eV Total energy + Delta-G solvation = -3376.849589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.15290 -41.48074 -39.39821 -36.45247 -36.17380 -34.34739 -33.43662 -31.67702 -30.38781 -29.62718 -27.70940 -25.72243 -24.83824 -24.50669 -22.79390 -22.09960 -20.24599 -19.53882 -18.97091 -18.54723 -17.80565 -17.31276 -16.94619 -16.73454 -16.65856 -15.79575 -15.46122 -15.13556 -14.76829 -14.27514 -14.17000 -13.70382 -13.53464 -13.52235 -13.33842 -13.11100 -13.00256 -12.80864 -12.53659 -12.34762 -12.18282 -12.10358 -11.75440 -11.51764 -11.42954 -11.20097 -10.90176 -10.63979 -9.81170 -9.13387 -8.62466 -5.43158 0.28046 0.95961 1.26789 1.34090 1.44212 1.57030 1.74686 1.83902 2.60247 3.03690 3.09167 3.35721 3.44446 3.51081 3.68337 3.77516 3.97790 4.00049 4.14589 4.25753 4.37855 4.39698 4.44563 4.65395 4.72794 4.77591 4.80383 4.88029 4.95686 5.07135 5.16749 5.19601 5.44780 5.58473 6.10658 6.23685 6.83834 6.90704 7.47999 7.59232 8.12898 8.86580 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.039584 B = 0.004044 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.179732 B = 6921.794244 C = 7089.204858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.588 5.588 3 C 0.500 3.500 4 O -0.571 6.571 5 C 0.097 3.903 6 N -0.299 5.299 7 C 0.184 3.816 8 N -0.347 5.347 9 N -0.119 5.119 10 N -0.096 5.096 11 C 0.140 3.860 12 H 0.101 0.899 13 C -0.126 4.126 14 C 0.091 3.909 15 N -0.622 5.622 16 C -0.320 4.320 17 H 0.035 0.965 18 C -0.079 4.079 19 N -0.959 5.959 20 Si 1.105 2.895 21 H -0.277 1.277 22 H -0.312 1.312 23 H -0.236 1.236 24 C 0.129 3.871 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.200 0.800 29 H 0.172 0.828 30 H 0.295 0.705 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.245 0.755 36 H 0.022 0.978 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 19.931 4.472 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.320 5.320 3 C 0.287 3.713 4 O -0.450 6.450 5 C -0.026 4.026 6 N -0.101 5.101 7 C -0.114 4.114 8 N -0.194 5.194 9 N -0.114 5.114 10 N -0.083 5.083 11 C 0.035 3.965 12 H 0.119 0.881 13 C -0.165 4.165 14 C -0.033 4.033 15 N -0.350 5.350 16 C -0.448 4.448 17 H 0.053 0.947 18 C -0.272 4.272 19 N -0.602 5.602 20 Si 0.929 3.071 21 H -0.204 1.204 22 H -0.241 1.241 23 H -0.160 1.160 24 C 0.003 3.997 25 H 0.104 0.896 26 H 0.136 0.864 27 H 0.086 0.914 28 H 0.217 0.783 29 H 0.190 0.810 30 H 0.310 0.690 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.865 20.023 6.135 21.025 hybrid contribution 0.967 -1.284 -2.145 2.681 sum -0.898 18.739 3.990 19.180 Atomic orbital electron populations 1.22538 0.76967 1.05636 1.04399 1.47742 1.08374 1.04262 1.71596 1.20873 0.87817 0.86141 0.76474 1.90824 1.15727 1.87365 1.51057 1.22596 0.88381 0.78676 1.12902 1.48434 1.22845 1.20416 1.18423 1.28793 0.99214 0.84749 0.98594 1.74878 1.09153 1.26520 1.08889 1.78638 1.20827 1.02731 1.09169 1.78934 0.99671 1.13500 1.16184 1.21809 0.97050 0.82711 0.94881 0.88145 1.23062 0.97540 0.98573 0.97366 1.22473 0.97681 0.98736 0.84395 1.44787 1.44615 1.38747 1.06835 1.19840 1.08868 1.15141 1.00981 0.94736 1.27328 0.98673 0.95122 1.06073 1.71041 1.46801 1.13806 1.28602 0.83462 0.73193 0.76872 0.73585 1.20369 1.24101 1.16003 1.21687 0.91480 0.90852 0.95695 0.89561 0.86408 0.91401 0.78276 0.81029 0.68999 0.90181 0.87859 0.92051 0.94280 0.94525 0.96020 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 8.34 127.77 1.07 1.73 16 2 N -0.59 -12.00 2.83 -815.98 -2.31 -14.31 16 3 C 0.50 9.92 7.69 87.66 0.67 10.60 16 4 O -0.57 -17.85 15.08 -3.03 -0.05 -17.90 16 5 C 0.10 0.75 5.52 85.63 0.47 1.22 16 6 N -0.30 -4.90 3.19 -355.57 -1.13 -6.03 16 7 C 0.18 2.39 12.79 180.27 2.31 4.69 16 8 N -0.35 -8.33 12.36 -60.30 -0.74 -9.07 16 9 N -0.12 -3.57 13.43 37.01 0.50 -3.08 16 10 N -0.10 -2.59 12.31 37.02 0.46 -2.13 16 11 C 0.14 3.94 3.57 46.18 0.16 4.11 16 12 H 0.10 3.05 6.99 -2.39 -0.02 3.03 16 13 C -0.13 -3.49 6.55 32.06 0.21 -3.28 16 14 C 0.09 3.21 3.82 86.94 0.33 3.54 16 15 N -0.62 -27.00 2.86 -691.52 -1.98 -28.98 16 16 C -0.32 -17.47 10.44 84.03 0.88 -16.59 16 17 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 18 C -0.08 -4.41 5.42 84.86 0.46 -3.95 16 19 N -0.96 -59.59 13.70 21.65 0.30 -59.29 16 20 Si 1.10 47.17 24.69 68.60 1.69 48.87 16 21 H -0.28 -11.06 6.58 99.48 0.65 -10.41 16 22 H -0.31 -14.00 7.11 99.48 0.71 -13.30 16 23 H -0.24 -7.99 5.85 99.48 0.58 -7.41 16 24 C 0.13 4.67 6.24 86.73 0.54 5.21 16 25 H 0.09 0.91 7.99 -2.39 -0.02 0.89 16 26 H 0.12 0.47 6.44 -2.39 -0.02 0.46 16 27 H 0.07 1.61 4.85 -2.39 -0.01 1.60 16 28 H 0.20 -0.72 7.34 -2.38 -0.02 -0.74 16 29 H 0.17 0.20 8.11 -2.39 -0.02 0.19 16 30 H 0.29 -0.46 8.06 -2.91 -0.02 -0.48 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 1.91 3.05 -2.39 -0.01 1.90 16 34 H 0.04 1.57 6.11 -2.39 -0.01 1.55 16 35 H 0.25 15.52 8.73 -92.71 -0.81 14.71 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 Total: -1.00 -88.81 298.57 4.73 -84.08 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 0.89 Total: 0.57 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 7.10 Total: 7.28 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -4.91 Total: -122.90 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.05 Total: -17.90 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.69 Total: 48.87 kcal Total: -88.81 4.73 -84.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032899976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.707 kcal (2) G-P(sol) polarization free energy of solvation -88.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds