Wall clock time and date at job start Tue Mar 31 2020 01:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00244 * 2 1 4 4 O 1.21277 * 120.00309 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99799 * 359.97438 * 3 2 1 6 6 N 1.46504 * 109.47359 * 180.02562 * 5 3 2 7 7 N 1.28878 * 125.45090 * 270.01937 * 6 5 3 8 8 C 1.31033 * 107.91709 * 179.97438 * 7 6 5 9 9 N 1.33311 * 106.90499 * 0.02562 * 8 7 6 10 10 N 1.28779 * 125.44614 * 89.96778 * 6 5 3 11 11 C 1.46497 * 119.99978 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88783 * 183.88640 * 11 2 1 13 13 C 1.55153 * 111.00491 * 60.00484 * 11 2 1 14 14 C 1.54321 * 102.94115 * 277.42619 * 13 11 2 15 15 N 1.47021 * 107.27493 * 337.80846 * 14 13 11 16 16 C 1.36934 * 125.65200 * 178.98713 * 15 14 13 17 17 H 1.08002 * 119.99843 * 174.86774 * 16 15 14 18 18 C 1.38816 * 120.00074 * 354.87103 * 16 15 14 19 19 N 1.31621 * 119.99834 * 7.05428 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 187.05861 * 18 16 15 21 21 H 1.48505 * 109.47144 * 94.98324 * 20 18 16 22 22 H 1.48493 * 109.46793 * 214.98140 * 20 18 16 23 23 H 1.48495 * 109.47259 * 334.98643 * 20 18 16 24 24 C 1.47426 * 108.70011 * 358.93532 * 15 14 13 25 25 H 1.09001 * 109.46790 * 90.00151 * 1 2 3 26 26 H 1.08996 * 109.47154 * 210.00506 * 1 2 3 27 27 H 1.09002 * 109.47020 * 330.00482 * 1 2 3 28 28 H 1.09003 * 109.47399 * 60.00382 * 5 3 2 29 29 H 1.09003 * 109.47011 * 299.99806 * 5 3 2 30 30 H 1.08002 * 126.55132 * 179.97438 * 8 7 6 31 31 H 1.08993 * 110.72359 * 35.78898 * 13 11 2 32 32 H 1.08998 * 110.72147 * 158.88701 * 13 11 2 33 33 H 1.09001 * 109.88200 * 97.22708 * 14 13 11 34 34 H 1.09000 * 109.88583 * 218.23493 * 14 13 11 35 35 H 0.96997 * 120.00002 * 180.02562 * 19 18 16 36 36 H 1.08996 * 110.36813 * 265.29256 * 24 15 14 37 37 H 1.09003 * 110.36412 * 142.97087 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5859 -0.0011 7 7 2.8234 4.1543 1.0485 8 6 3.6356 5.1035 0.6533 9 7 3.6256 5.0922 -0.6797 10 7 2.8231 4.1527 -1.0504 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0695 13 6 1.8484 -2.1129 -1.2535 14 6 0.5312 -2.8068 -0.8474 15 7 0.4792 -2.8192 0.6219 16 6 -0.5404 -3.3294 1.3802 17 1 -0.4476 -3.3659 2.4556 18 6 -1.6934 -3.7998 0.7667 19 7 -1.7528 -3.8850 -0.5454 20 14 -3.1606 -4.3119 1.8033 21 1 -4.1089 -3.1745 1.9150 22 1 -3.8427 -5.4638 1.1607 23 1 -2.6966 -4.7043 3.1582 24 6 1.7074 -2.1924 1.1436 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.7584 2.5303 0.8892 29 1 0.7591 2.5298 -0.8909 30 1 4.2040 5.7687 1.2866 31 1 1.6945 -1.4704 -2.1204 32 1 2.6286 -2.8474 -1.4533 33 1 -0.3183 -2.2505 -1.2436 34 1 0.5165 -3.8274 -1.2297 35 1 -2.5585 -4.2133 -0.9742 36 1 2.4567 -2.9524 1.3649 37 1 1.4849 -1.6068 2.0356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033078325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:53 Heat of formation + Delta-G solvation = 144.197875 kcal Electronic energy + Delta-G solvation = -22343.445093 eV Core-core repulsion = 18968.094658 eV Total energy + Delta-G solvation = -3375.350434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.37986 -40.15273 -37.74909 -35.01395 -34.52795 -33.13540 -32.35256 -29.86483 -29.07822 -27.86854 -26.18597 -24.54578 -24.01380 -23.38567 -21.11203 -20.21198 -19.03189 -18.10830 -17.64322 -17.01876 -16.57811 -16.04763 -15.62156 -15.27744 -14.76781 -14.03644 -13.97243 -13.87621 -13.48964 -13.04434 -12.66662 -12.27462 -12.09139 -12.01628 -11.86238 -11.74314 -11.20000 -11.06080 -11.03958 -11.01848 -10.91027 -10.70764 -10.40901 -10.23780 -10.06994 -9.81524 -9.65759 -8.82097 -8.44647 -6.96829 -5.88338 -3.22661 1.12290 1.69050 2.19253 2.40328 3.03372 3.29244 3.36550 3.38004 3.97401 4.20339 4.30111 4.36199 4.58013 4.81855 5.20198 5.30690 5.32536 5.40325 5.55723 5.61442 5.67518 5.73358 5.88735 5.95465 6.04036 6.19766 6.32632 6.41328 6.48125 6.62012 6.81819 7.41242 7.44244 7.47843 7.67860 8.01930 8.07700 8.29614 9.05192 9.64499 10.29620 11.22650 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.004067 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.971927 B = 6882.285269 C = 7213.427990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.576 5.576 3 C 0.501 3.499 4 O -0.537 6.537 5 C 0.111 3.889 6 N -0.122 5.122 7 N -0.301 5.301 8 C 0.141 3.859 9 N -0.289 5.289 10 N -0.050 5.050 11 C 0.123 3.877 12 H 0.101 0.899 13 C -0.155 4.155 14 C 0.172 3.828 15 N -0.603 5.603 16 C -0.237 4.237 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.916 5.916 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.125 3.875 25 H 0.059 0.941 26 H 0.132 0.868 27 H 0.055 0.945 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.235 0.765 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.254 0.746 36 H 0.034 0.966 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 12.264 0.994 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.307 5.307 3 C 0.285 3.715 4 O -0.414 6.414 5 C -0.013 4.013 6 N -0.033 5.033 7 N -0.151 5.151 8 C -0.162 4.162 9 N -0.160 5.160 10 N -0.044 5.044 11 C 0.019 3.981 12 H 0.119 0.881 13 C -0.194 4.194 14 C 0.048 3.952 15 N -0.330 5.330 16 C -0.364 4.364 17 H 0.097 0.903 18 C -0.199 4.199 19 N -0.563 5.563 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.001 4.001 25 H 0.078 0.922 26 H 0.150 0.850 27 H 0.074 0.926 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.251 0.749 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.284 11.843 0.410 12.601 hybrid contribution -0.697 -0.202 0.979 1.218 sum 3.587 11.641 1.389 12.261 Atomic orbital electron populations 1.22471 0.77786 1.06027 1.03001 1.47645 1.07996 1.04684 1.70419 1.20117 0.88106 0.85047 0.78223 1.90764 1.13332 1.86874 1.50422 1.22143 0.88928 0.81216 1.09062 1.49563 1.29373 1.23415 1.00993 1.74701 1.14037 1.10522 1.15803 1.27313 0.99318 0.98113 0.91466 1.75861 1.14550 1.13720 1.11893 1.78990 1.07202 1.04094 1.14143 1.22344 0.96142 0.81860 0.97704 0.88139 1.23257 1.01017 0.98698 0.96453 1.21263 0.91555 0.98628 0.83793 1.44640 1.17577 1.68961 1.01828 1.19046 0.92512 1.34859 0.90030 0.90336 1.24805 0.98151 1.01113 0.95811 1.69975 1.27736 1.51423 1.07155 0.86142 0.82817 0.77854 0.79212 1.21503 1.21743 1.20633 1.21898 0.90262 0.93469 0.94510 0.92234 0.84980 0.92611 0.83687 0.83610 0.74900 0.91775 0.91176 0.92844 0.93980 0.93587 0.94888 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 8.50 59.85 0.51 1.21 16 2 N -0.58 -8.72 2.91 -171.48 -0.50 -9.22 16 3 C 0.50 7.46 7.74 -10.99 -0.09 7.37 16 4 O -0.54 -10.08 15.81 5.56 0.09 -9.99 16 5 C 0.11 1.21 5.64 -5.19 -0.03 1.18 16 6 N -0.12 -1.66 3.49 -11.71 -0.04 -1.70 16 7 N -0.30 -4.04 12.13 29.34 0.36 -3.68 16 8 C 0.14 1.64 13.26 -91.60 -1.21 0.43 16 9 N -0.29 -4.11 12.50 29.33 0.37 -3.75 16 10 N -0.05 -0.75 13.25 60.35 0.80 0.05 16 11 C 0.12 2.08 3.66 -65.78 -0.24 1.84 16 12 H 0.10 1.73 7.02 -51.93 -0.36 1.36 16 13 C -0.16 -2.69 6.48 -24.90 -0.16 -2.86 16 14 C 0.17 3.70 4.34 -3.07 -0.01 3.68 16 15 N -0.60 -13.49 1.87 -170.07 -0.32 -13.81 16 16 C -0.24 -5.89 9.78 -15.06 -0.15 -6.04 16 17 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 18 C 0.00 -0.04 5.48 -17.43 -0.10 -0.14 16 19 N -0.92 -24.39 10.36 55.49 0.57 -23.82 16 20 Si 0.91 20.34 29.56 -169.99 -5.02 15.32 16 21 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.13 2.37 6.40 -2.53 -0.02 2.35 16 25 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 26 H 0.13 2.44 4.74 -51.93 -0.25 2.19 16 27 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 28 H 0.15 1.18 7.40 -51.93 -0.38 0.80 16 29 H 0.15 1.17 8.11 -51.93 -0.42 0.75 16 30 H 0.23 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.23 6.27 -51.93 -0.33 0.90 16 34 H 0.04 1.04 7.60 -51.93 -0.39 0.64 16 35 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -31.69 306.73 -5.11 -36.80 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.54 Total: 0.14 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -1.49 Total: 9.04 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 1.24 Total: -55.92 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.69 -5.11 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033078325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.994 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds