Wall clock time and date at job start Tue Mar 31 2020 01:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00244 * 2 1 4 4 O 1.21277 * 120.00309 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99799 * 359.97438 * 3 2 1 6 6 N 1.46504 * 109.47359 * 180.02562 * 5 3 2 7 7 N 1.28878 * 125.45090 * 270.01937 * 6 5 3 8 8 C 1.31033 * 107.91709 * 179.97438 * 7 6 5 9 9 N 1.33311 * 106.90499 * 0.02562 * 8 7 6 10 10 N 1.28779 * 125.44614 * 89.96778 * 6 5 3 11 11 C 1.46497 * 119.99978 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88783 * 183.88640 * 11 2 1 13 13 C 1.55153 * 111.00491 * 60.00484 * 11 2 1 14 14 C 1.54321 * 102.94115 * 277.42619 * 13 11 2 15 15 N 1.47021 * 107.27493 * 337.80846 * 14 13 11 16 16 C 1.36934 * 125.65200 * 178.98713 * 15 14 13 17 17 H 1.08002 * 119.99843 * 174.86774 * 16 15 14 18 18 C 1.38816 * 120.00074 * 354.87103 * 16 15 14 19 19 N 1.31621 * 119.99834 * 7.05428 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 187.05861 * 18 16 15 21 21 H 1.48505 * 109.47144 * 94.98324 * 20 18 16 22 22 H 1.48493 * 109.46793 * 214.98140 * 20 18 16 23 23 H 1.48495 * 109.47259 * 334.98643 * 20 18 16 24 24 C 1.47426 * 108.70011 * 358.93532 * 15 14 13 25 25 H 1.09001 * 109.46790 * 90.00151 * 1 2 3 26 26 H 1.08996 * 109.47154 * 210.00506 * 1 2 3 27 27 H 1.09002 * 109.47020 * 330.00482 * 1 2 3 28 28 H 1.09003 * 109.47399 * 60.00382 * 5 3 2 29 29 H 1.09003 * 109.47011 * 299.99806 * 5 3 2 30 30 H 1.08002 * 126.55132 * 179.97438 * 8 7 6 31 31 H 1.08993 * 110.72359 * 35.78898 * 13 11 2 32 32 H 1.08998 * 110.72147 * 158.88701 * 13 11 2 33 33 H 1.09001 * 109.88200 * 97.22708 * 14 13 11 34 34 H 1.09000 * 109.88583 * 218.23493 * 14 13 11 35 35 H 0.96997 * 120.00002 * 180.02562 * 19 18 16 36 36 H 1.08996 * 110.36813 * 265.29256 * 24 15 14 37 37 H 1.09003 * 110.36412 * 142.97087 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5859 -0.0011 7 7 2.8234 4.1543 1.0485 8 6 3.6356 5.1035 0.6533 9 7 3.6256 5.0922 -0.6797 10 7 2.8231 4.1527 -1.0504 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0695 13 6 1.8484 -2.1129 -1.2535 14 6 0.5312 -2.8068 -0.8474 15 7 0.4792 -2.8192 0.6219 16 6 -0.5404 -3.3294 1.3802 17 1 -0.4476 -3.3659 2.4556 18 6 -1.6934 -3.7998 0.7667 19 7 -1.7528 -3.8850 -0.5454 20 14 -3.1606 -4.3119 1.8033 21 1 -4.1089 -3.1745 1.9150 22 1 -3.8427 -5.4638 1.1607 23 1 -2.6966 -4.7043 3.1582 24 6 1.7074 -2.1924 1.1436 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.7584 2.5303 0.8892 29 1 0.7591 2.5298 -0.8909 30 1 4.2040 5.7687 1.2866 31 1 1.6945 -1.4704 -2.1204 32 1 2.6286 -2.8474 -1.4533 33 1 -0.3183 -2.2505 -1.2436 34 1 0.5165 -3.8274 -1.2297 35 1 -2.5585 -4.2133 -0.9742 36 1 2.4567 -2.9524 1.3649 37 1 1.4849 -1.6068 2.0356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033078325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:53 Heat of formation + Delta-G solvation = 123.383065 kcal Electronic energy + Delta-G solvation = -22344.347691 eV Core-core repulsion = 18968.094658 eV Total energy + Delta-G solvation = -3376.253032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.34394 -41.41524 -39.21760 -36.03282 -35.95784 -34.19628 -33.97374 -31.38147 -30.35463 -29.27787 -27.52961 -26.23895 -24.96005 -24.49450 -22.35424 -21.94128 -20.29711 -19.13647 -18.94792 -18.57948 -17.75791 -17.08390 -16.85912 -16.64213 -16.25139 -15.63487 -15.36965 -14.98369 -14.62501 -14.48930 -13.84117 -13.70846 -13.47696 -13.44282 -13.13470 -12.95645 -12.81606 -12.76151 -12.35478 -12.25481 -12.03136 -12.00262 -11.98561 -11.83667 -11.66818 -11.53434 -10.88690 -10.66549 -9.80672 -8.79370 -7.82113 -5.16517 0.10957 0.79975 1.26631 1.28603 1.51364 1.53561 1.60907 1.89462 2.52626 3.13140 3.16593 3.37948 3.48972 3.64949 3.83756 3.86463 3.96689 4.01093 4.27791 4.34211 4.59828 4.67660 4.72682 4.75975 4.80557 4.87688 4.93724 5.03454 5.04286 5.29593 5.51210 5.52159 5.68551 5.81618 6.20928 6.28006 6.84490 7.13697 7.32199 7.78532 8.43119 9.27618 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.004067 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.971927 B = 6882.285269 C = 7213.427990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.576 5.576 3 C 0.504 3.496 4 O -0.578 6.578 5 C 0.110 3.890 6 N -0.123 5.123 7 N -0.318 5.318 8 C 0.149 3.851 9 N -0.312 5.312 10 N -0.072 5.072 11 C 0.134 3.866 12 H 0.102 0.898 13 C -0.141 4.141 14 C 0.186 3.814 15 N -0.614 5.614 16 C -0.239 4.239 17 H 0.079 0.921 18 C -0.050 4.050 19 N -0.942 5.942 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.302 1.302 23 H -0.275 1.275 24 C 0.127 3.873 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.277 0.723 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.002 0.998 35 H 0.247 0.753 36 H 0.034 0.966 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 13.989 1.891 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.307 5.307 3 C 0.290 3.710 4 O -0.458 6.458 5 C -0.013 4.013 6 N -0.036 5.036 7 N -0.167 5.167 8 C -0.154 4.154 9 N -0.182 5.182 10 N -0.066 5.066 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.180 4.180 14 C 0.061 3.939 15 N -0.341 5.341 16 C -0.368 4.368 17 H 0.097 0.903 18 C -0.244 4.244 19 N -0.590 5.590 20 Si 0.798 3.202 21 H -0.209 1.209 22 H -0.229 1.229 23 H -0.200 1.200 24 C 0.001 3.999 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.196 0.804 29 H 0.196 0.804 30 H 0.292 0.708 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.205 13.587 1.322 14.285 hybrid contribution -0.611 -0.735 0.750 1.215 sum 3.594 12.852 2.073 13.505 Atomic orbital electron populations 1.22415 0.76943 1.06184 1.03343 1.47634 1.08340 1.04313 1.70368 1.20666 0.87689 0.85923 0.76682 1.90750 1.15334 1.87538 1.52217 1.22452 0.88234 0.78306 1.12284 1.49777 1.29445 1.23612 1.00749 1.74701 1.14772 1.11203 1.16054 1.28197 0.98428 0.97715 0.91044 1.75837 1.14984 1.14107 1.13303 1.78945 1.07946 1.04802 1.14938 1.22097 0.96347 0.82466 0.96155 0.87963 1.23114 0.98925 0.98855 0.97152 1.20977 0.93140 0.96404 0.83392 1.44764 1.18158 1.68943 1.02188 1.19304 0.93183 1.33927 0.90382 0.90269 1.25442 1.00317 1.01931 0.96682 1.70156 1.27783 1.52692 1.08404 0.85220 0.80030 0.77040 0.77952 1.20929 1.22915 1.19982 1.21959 0.88914 0.93730 0.95333 0.91838 0.88951 0.88239 0.80395 0.80396 0.70775 0.90469 0.90231 0.94613 0.98019 0.94357 0.94782 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.39 8.50 127.77 1.09 2.47 16 2 N -0.58 -16.28 2.91 -814.84 -2.37 -18.65 16 3 C 0.50 13.83 7.74 87.66 0.68 14.50 16 4 O -0.58 -20.88 15.81 -3.02 -0.05 -20.93 16 5 C 0.11 2.04 5.64 85.63 0.48 2.52 16 6 N -0.12 -3.06 3.49 -190.97 -0.67 -3.72 16 7 N -0.32 -7.73 12.13 -61.10 -0.74 -8.47 16 8 C 0.15 3.10 13.26 180.69 2.40 5.50 16 9 N -0.31 -8.34 12.50 -61.12 -0.76 -9.11 16 10 N -0.07 -2.04 13.25 37.02 0.49 -1.55 16 11 C 0.13 4.37 3.66 46.38 0.17 4.54 16 12 H 0.10 3.38 7.02 -2.39 -0.02 3.37 16 13 C -0.14 -4.81 6.48 31.78 0.21 -4.60 16 14 C 0.19 8.10 4.34 86.73 0.38 8.47 16 15 N -0.61 -27.57 1.87 -691.98 -1.30 -28.86 16 16 C -0.24 -11.95 9.78 84.03 0.82 -11.13 16 17 H 0.08 3.86 7.84 -2.91 -0.02 3.83 16 18 C -0.05 -2.54 5.48 84.86 0.46 -2.07 16 19 N -0.94 -51.22 10.36 21.65 0.22 -50.99 16 20 Si 0.97 41.94 29.56 68.60 2.03 43.97 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 C 0.13 4.70 6.40 86.86 0.56 5.26 16 25 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 26 H 0.09 3.31 4.74 -2.39 -0.01 3.30 16 27 H 0.10 1.68 6.44 -2.39 -0.02 1.66 16 28 H 0.18 2.10 7.40 -2.39 -0.02 2.09 16 29 H 0.18 2.14 8.11 -2.39 -0.02 2.12 16 30 H 0.28 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 1.68 6.27 -2.39 -0.01 1.66 16 34 H 0.00 0.08 7.60 -2.39 -0.02 0.06 16 35 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.05 306.73 5.19 -64.87 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.09 Total: 7.99 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 7.24 Total: 25.47 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.12 Total: -121.36 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.05 5.19 -64.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033078325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.249 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds