Wall clock time and date at job start Tue Mar 31 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99693 * 2 1 4 4 O 1.21282 * 120.00175 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99837 * 0.02562 * 3 2 1 6 6 N 1.46502 * 109.46953 * 179.97438 * 5 3 2 7 7 N 1.28886 * 125.44825 * 89.99577 * 6 5 3 8 8 C 1.31034 * 107.91542 * 180.02562 * 7 6 5 9 9 N 1.33315 * 106.90356 * 0.02562 * 8 7 6 10 10 N 1.28785 * 125.45257 * 270.00127 * 6 5 3 11 11 C 1.46502 * 120.00173 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.63751 * 181.69138 * 11 2 1 13 13 C 1.55158 * 110.71698 * 305.02008 * 11 2 1 14 14 C 1.54909 * 101.57876 * 153.86827 * 13 11 2 15 15 N 1.47433 * 104.83297 * 322.98841 * 14 13 11 16 16 C 1.36934 * 125.64997 * 204.16472 * 15 14 13 17 17 H 1.08000 * 119.99966 * 161.47904 * 16 15 14 18 18 C 1.38810 * 119.99775 * 341.47529 * 16 15 14 19 19 N 1.31620 * 119.99793 * 157.62064 * 18 16 15 20 20 Si 1.86802 * 120.00339 * 337.61851 * 18 16 15 21 21 H 1.48498 * 109.47198 * 84.53780 * 20 18 16 22 22 H 1.48502 * 109.47133 * 204.53979 * 20 18 16 23 23 H 1.48503 * 109.46828 * 324.53604 * 20 18 16 24 24 C 1.47021 * 108.70038 * 24.12960 * 15 14 13 25 25 H 1.09001 * 109.47176 * 90.00141 * 1 2 3 26 26 H 1.09010 * 109.46895 * 209.99694 * 1 2 3 27 27 H 1.08996 * 109.47440 * 329.99660 * 1 2 3 28 28 H 1.08999 * 109.47187 * 60.00382 * 5 3 2 29 29 H 1.08997 * 109.47055 * 299.99787 * 5 3 2 30 30 H 1.08006 * 126.55158 * 179.97438 * 8 7 6 31 31 H 1.08994 * 111.00401 * 271.93908 * 13 11 2 32 32 H 1.09000 * 111.00279 * 35.79293 * 13 11 2 33 33 H 1.09004 * 110.36800 * 204.15305 * 14 13 11 34 34 H 1.08995 * 110.46295 * 81.87598 * 14 13 11 35 35 H 0.97010 * 120.00204 * 179.97438 * 19 18 16 36 36 H 1.08994 * 109.88237 * 239.51924 * 24 15 14 37 37 H 1.09001 * 109.87989 * 118.35634 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 7 2.3372 3.5859 0.0011 7 7 2.8229 4.1545 -1.0486 8 6 3.6352 5.1037 -0.6535 9 7 3.6263 5.0914 0.6796 10 7 2.8226 4.1532 1.0504 11 6 2.1976 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0296 13 6 1.7508 -2.1610 1.1875 14 6 2.0639 -3.5785 0.6468 15 7 1.7325 -3.5167 -0.7884 16 6 1.3991 -4.5852 -1.5773 17 1 0.8906 -4.4251 -2.5165 18 6 1.7150 -5.8740 -1.1698 19 7 1.0472 -6.8995 -1.6541 20 14 3.0878 -6.1529 0.0660 21 1 2.5552 -5.9904 1.4426 22 1 3.6288 -7.5263 -0.0967 23 1 4.1709 -5.1636 -0.1658 24 6 1.8182 -2.1177 -1.2322 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 0.7589 2.5298 0.8908 29 1 0.7582 2.5302 -0.8891 30 1 4.2041 5.7685 -1.2867 31 1 2.3374 -1.9451 2.0804 32 1 0.6850 -2.0446 1.3844 33 1 1.4432 -4.3214 1.1478 34 1 3.1196 -3.8135 0.7825 35 1 1.2681 -7.8003 -1.3697 36 1 0.8541 -1.7931 -1.6235 37 1 2.5848 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033078326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:56 Heat of formation + Delta-G solvation = 146.147134 kcal Electronic energy + Delta-G solvation = -21950.488255 eV Core-core repulsion = 18575.222347 eV Total energy + Delta-G solvation = -3375.265908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.52314 -40.39914 -37.93746 -35.29007 -35.18144 -33.27901 -32.39635 -30.33143 -29.32639 -28.16580 -27.01993 -24.54473 -24.15625 -23.38226 -21.32807 -20.78374 -19.30387 -18.38238 -17.90486 -17.06260 -16.81259 -16.27304 -15.92085 -15.45703 -15.23866 -14.45546 -14.07140 -13.72572 -13.65239 -13.57687 -13.02273 -12.99695 -12.62085 -12.34768 -12.18252 -11.97478 -11.52604 -11.36153 -11.26440 -11.17235 -11.12997 -10.88090 -10.76348 -10.22353 -10.10790 -10.00682 -9.52150 -8.86656 -8.71371 -7.15141 -6.02199 -3.33977 0.95996 1.51319 2.06517 2.13636 2.68093 3.28981 3.44747 3.46673 3.79234 3.87040 4.14305 4.33137 4.48092 4.62107 4.77805 4.87935 4.97442 5.09765 5.24504 5.27518 5.38977 5.48448 5.51110 5.55713 5.71143 5.78995 5.83613 6.10156 6.15127 6.38967 6.47617 6.55114 6.61975 7.07295 7.59407 7.72898 8.15319 8.22918 8.74092 9.60213 10.06503 11.13537 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.003650 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.358456 B = 7669.717895 C = 7815.035047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.592 5.592 3 C 0.504 3.496 4 O -0.523 6.523 5 C 0.112 3.888 6 N -0.126 5.126 7 N -0.300 5.300 8 C 0.144 3.856 9 N -0.286 5.286 10 N -0.050 5.050 11 C 0.126 3.874 12 H 0.108 0.892 13 C -0.140 4.140 14 C 0.111 3.889 15 N -0.606 5.606 16 C -0.245 4.245 17 H 0.093 0.907 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.276 1.276 24 C 0.129 3.871 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.236 0.764 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.039 0.961 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 20.558 4.319 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.324 5.324 3 C 0.288 3.712 4 O -0.398 6.398 5 C -0.013 4.013 6 N -0.038 5.038 7 N -0.150 5.150 8 C -0.159 4.159 9 N -0.157 5.157 10 N -0.044 5.044 11 C 0.023 3.977 12 H 0.126 0.874 13 C -0.179 4.179 14 C -0.014 4.014 15 N -0.334 5.334 16 C -0.371 4.371 17 H 0.111 0.889 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.711 3.289 21 H -0.211 1.211 22 H -0.229 1.229 23 H -0.202 1.202 24 C 0.003 3.997 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.252 0.748 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.640 20.013 4.774 20.743 hybrid contribution 0.980 -0.180 0.058 0.998 sum -1.660 19.833 4.832 20.480 Atomic orbital electron populations 1.22009 0.78853 1.03952 1.03069 1.47747 1.07392 1.05322 1.71971 1.20152 0.88231 0.84928 0.77902 1.90814 1.13323 1.86677 1.49001 1.22108 0.89010 0.81112 1.09047 1.49538 1.29600 1.23491 1.01121 1.74720 1.14102 1.10487 1.15642 1.27350 0.99125 0.98001 0.91417 1.75872 1.14316 1.13632 1.11920 1.78989 1.07212 1.04156 1.14078 1.22331 0.97455 0.80982 0.96973 0.87362 1.23131 1.01728 0.96171 0.96837 1.21968 0.98356 0.94765 0.86317 1.44729 1.81863 1.02580 1.04213 1.18612 1.31633 0.82989 1.03909 0.88931 1.24993 0.98976 0.95090 0.98400 1.69834 1.39809 0.98816 1.46510 0.87010 0.84486 0.76157 0.81200 1.21112 1.22871 1.20184 1.21580 0.98977 0.85382 0.93767 0.91325 0.89181 0.91150 0.83541 0.83559 0.74776 0.91080 0.90398 0.91741 0.95371 0.92583 0.94292 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 9.13 59.85 0.55 1.03 16 2 N -0.59 -6.94 2.88 -171.83 -0.50 -7.44 16 3 C 0.50 6.23 7.74 -10.98 -0.09 6.14 16 4 O -0.52 -9.06 15.80 5.56 0.09 -8.97 16 5 C 0.11 0.90 5.64 -5.19 -0.03 0.87 16 6 N -0.13 -1.47 3.49 -11.72 -0.04 -1.51 16 7 N -0.30 -3.57 12.13 29.34 0.36 -3.22 16 8 C 0.14 1.51 13.26 -91.59 -1.21 0.29 16 9 N -0.29 -3.71 12.50 29.33 0.37 -3.34 16 10 N -0.05 -0.67 13.25 60.35 0.80 0.13 16 11 C 0.13 1.96 3.36 -66.09 -0.22 1.74 16 12 H 0.11 1.90 6.99 -51.93 -0.36 1.53 16 13 C -0.14 -2.15 6.61 -24.58 -0.16 -2.31 16 14 C 0.11 2.30 4.70 -2.52 -0.01 2.29 16 15 N -0.61 -14.02 3.21 -170.07 -0.55 -14.57 16 16 C -0.24 -6.72 10.57 -15.06 -0.16 -6.88 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16 19 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 20 Si 0.88 22.19 24.27 -169.99 -4.13 18.06 16 21 H -0.28 -6.80 6.49 56.52 0.37 -6.43 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.28 -6.95 6.66 56.52 0.38 -6.57 16 24 C 0.13 2.42 6.88 -3.07 -0.02 2.40 16 25 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 26 H 0.09 0.78 6.08 -51.92 -0.32 0.46 16 27 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 28 H 0.15 0.65 7.40 -51.93 -0.38 0.26 16 29 H 0.15 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.24 1.30 8.06 -52.48 -0.42 0.87 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.06 6.09 -51.93 -0.32 0.74 16 33 H 0.06 1.41 6.64 -51.93 -0.34 1.06 16 34 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.04 0.68 6.94 -51.93 -0.36 0.32 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 303.92 15.07 4.58 4.58 Total: -1.00 -36.62 303.92 -4.12 -40.74 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -4.42 Total: -4.04 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.45 Total: 6.17 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 1.22 Total: -56.53 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.62 -4.12 -40.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033078326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.884 kcal (2) G-P(sol) polarization free energy of solvation -36.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds