Wall clock time and date at job start Tue Mar 31 2020 01:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99693 * 2 1 4 4 O 1.21282 * 120.00175 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99837 * 0.02562 * 3 2 1 6 6 N 1.46502 * 109.46953 * 179.97438 * 5 3 2 7 7 N 1.28886 * 125.44825 * 89.99577 * 6 5 3 8 8 C 1.31034 * 107.91542 * 180.02562 * 7 6 5 9 9 N 1.33315 * 106.90356 * 0.02562 * 8 7 6 10 10 N 1.28785 * 125.45257 * 270.00127 * 6 5 3 11 11 C 1.46502 * 120.00173 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.63751 * 181.69138 * 11 2 1 13 13 C 1.55158 * 110.71698 * 305.02008 * 11 2 1 14 14 C 1.54909 * 101.57876 * 153.86827 * 13 11 2 15 15 N 1.47433 * 104.83297 * 322.98841 * 14 13 11 16 16 C 1.36934 * 125.64997 * 204.16472 * 15 14 13 17 17 H 1.08000 * 119.99966 * 161.47904 * 16 15 14 18 18 C 1.38810 * 119.99775 * 341.47529 * 16 15 14 19 19 N 1.31620 * 119.99793 * 157.62064 * 18 16 15 20 20 Si 1.86802 * 120.00339 * 337.61851 * 18 16 15 21 21 H 1.48498 * 109.47198 * 84.53780 * 20 18 16 22 22 H 1.48502 * 109.47133 * 204.53979 * 20 18 16 23 23 H 1.48503 * 109.46828 * 324.53604 * 20 18 16 24 24 C 1.47021 * 108.70038 * 24.12960 * 15 14 13 25 25 H 1.09001 * 109.47176 * 90.00141 * 1 2 3 26 26 H 1.09010 * 109.46895 * 209.99694 * 1 2 3 27 27 H 1.08996 * 109.47440 * 329.99660 * 1 2 3 28 28 H 1.08999 * 109.47187 * 60.00382 * 5 3 2 29 29 H 1.08997 * 109.47055 * 299.99787 * 5 3 2 30 30 H 1.08006 * 126.55158 * 179.97438 * 8 7 6 31 31 H 1.08994 * 111.00401 * 271.93908 * 13 11 2 32 32 H 1.09000 * 111.00279 * 35.79293 * 13 11 2 33 33 H 1.09004 * 110.36800 * 204.15305 * 14 13 11 34 34 H 1.08995 * 110.46295 * 81.87598 * 14 13 11 35 35 H 0.97010 * 120.00204 * 179.97438 * 19 18 16 36 36 H 1.08994 * 109.88237 * 239.51924 * 24 15 14 37 37 H 1.09001 * 109.87989 * 118.35634 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 7 2.3372 3.5859 0.0011 7 7 2.8229 4.1545 -1.0486 8 6 3.6352 5.1037 -0.6535 9 7 3.6263 5.0914 0.6796 10 7 2.8226 4.1532 1.0504 11 6 2.1976 -1.2687 -0.0006 12 1 3.2726 -1.0916 0.0296 13 6 1.7508 -2.1610 1.1875 14 6 2.0639 -3.5785 0.6468 15 7 1.7325 -3.5167 -0.7884 16 6 1.3991 -4.5852 -1.5773 17 1 0.8906 -4.4251 -2.5165 18 6 1.7150 -5.8740 -1.1698 19 7 1.0472 -6.8995 -1.6541 20 14 3.0878 -6.1529 0.0660 21 1 2.5552 -5.9904 1.4426 22 1 3.6288 -7.5263 -0.0967 23 1 4.1709 -5.1636 -0.1658 24 6 1.8182 -2.1177 -1.2322 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 0.7589 2.5298 0.8908 29 1 0.7582 2.5302 -0.8891 30 1 4.2041 5.7685 -1.2867 31 1 2.3374 -1.9451 2.0804 32 1 0.6850 -2.0446 1.3844 33 1 1.4432 -4.3214 1.1478 34 1 3.1196 -3.8135 0.7825 35 1 1.2681 -7.8003 -1.3697 36 1 0.8541 -1.7931 -1.6235 37 1 2.5848 -2.0189 -2.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033078326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:55 Heat of formation + Delta-G solvation = 117.723677 kcal Electronic energy + Delta-G solvation = -21951.720789 eV Core-core repulsion = 18575.222347 eV Total energy + Delta-G solvation = -3376.498442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.34737 -41.43191 -39.34176 -36.50638 -36.03097 -34.35885 -34.08001 -31.80664 -30.53589 -29.40487 -27.89411 -26.24515 -24.97465 -24.39558 -22.79236 -22.17650 -20.41105 -19.21291 -19.03345 -18.69908 -17.82742 -17.30933 -17.02207 -16.90036 -16.24881 -15.84392 -15.43699 -15.04291 -14.93321 -14.52650 -14.39049 -14.03808 -13.82266 -13.70756 -13.23652 -13.04136 -12.98643 -12.97474 -12.54218 -12.49329 -12.24901 -12.12258 -12.03677 -11.71576 -11.68966 -11.49212 -10.99057 -10.84643 -9.82278 -9.11790 -8.21457 -5.48921 0.09413 0.81859 1.23694 1.26718 1.26835 1.37922 1.44927 1.77373 2.37401 2.99967 3.07722 3.17137 3.33896 3.47862 3.63497 3.73091 3.86906 3.98485 4.06160 4.22646 4.30259 4.37752 4.65897 4.71950 4.75818 4.78776 4.82809 4.91479 4.97398 4.98552 5.05663 5.13122 5.38371 5.62766 6.06540 6.15469 6.69981 6.81121 7.31105 7.48741 8.03502 8.97992 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.003650 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.358456 B = 7669.717895 C = 7815.035047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.586 5.586 3 C 0.503 3.497 4 O -0.581 6.581 5 C 0.110 3.890 6 N -0.125 5.125 7 N -0.318 5.318 8 C 0.148 3.852 9 N -0.313 5.313 10 N -0.071 5.071 11 C 0.139 3.861 12 H 0.086 0.914 13 C -0.121 4.121 14 C 0.102 3.898 15 N -0.623 5.623 16 C -0.234 4.234 17 H 0.064 0.936 18 C -0.031 4.031 19 N -0.952 5.952 20 Si 0.940 3.060 21 H -0.263 1.263 22 H -0.308 1.308 23 H -0.279 1.279 24 C 0.129 3.871 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.191 0.809 29 H 0.185 0.815 30 H 0.274 0.726 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.017 0.983 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 23.007 5.659 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.318 5.318 3 C 0.289 3.711 4 O -0.460 6.460 5 C -0.012 4.012 6 N -0.038 5.038 7 N -0.168 5.168 8 C -0.155 4.155 9 N -0.184 5.184 10 N -0.064 5.064 11 C 0.034 3.966 12 H 0.105 0.895 13 C -0.160 4.160 14 C -0.023 4.023 15 N -0.351 5.351 16 C -0.363 4.363 17 H 0.082 0.918 18 C -0.226 4.226 19 N -0.599 5.599 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.236 1.236 23 H -0.205 1.205 24 C 0.003 3.997 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.208 0.792 29 H 0.202 0.798 30 H 0.289 0.711 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.702 22.511 6.145 23.627 hybrid contribution 1.251 -0.875 -0.467 1.596 sum -2.451 21.636 5.678 22.503 Atomic orbital electron populations 1.22395 0.75856 1.06147 1.04410 1.47710 1.08947 1.03735 1.71370 1.20853 0.87716 0.86184 0.76298 1.90798 1.16062 1.87556 1.51580 1.22563 0.88055 0.77561 1.13010 1.49845 1.29549 1.23715 1.00671 1.74711 1.14832 1.11117 1.16093 1.28164 0.98468 0.97779 0.91056 1.75839 1.14974 1.14268 1.13270 1.78916 1.07871 1.04760 1.14887 1.21834 0.96904 0.82560 0.95285 0.89548 1.23039 1.03760 0.92132 0.97020 1.22061 0.97306 0.97997 0.84937 1.44812 1.81684 1.03202 1.05381 1.18571 1.30081 0.84437 1.03206 0.91774 1.25559 1.00991 0.95003 1.01023 1.69943 1.41602 0.99189 1.49122 0.86061 0.81515 0.75228 0.80337 1.18825 1.23615 1.20533 1.21675 0.99185 0.83809 0.95040 0.90465 0.89839 0.86161 0.79236 0.79809 0.71057 0.88918 0.87849 0.92915 0.96499 0.92739 0.92643 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 9.13 127.77 1.17 1.72 16 2 N -0.59 -11.87 2.88 -815.95 -2.35 -14.22 16 3 C 0.50 11.03 7.74 87.66 0.68 11.71 16 4 O -0.58 -19.56 15.80 -3.04 -0.05 -19.61 16 5 C 0.11 1.31 5.64 85.63 0.48 1.79 16 6 N -0.13 -2.59 3.49 -190.99 -0.67 -3.26 16 7 N -0.32 -6.86 12.13 -61.10 -0.74 -7.60 16 8 C 0.15 2.80 13.26 180.69 2.40 5.20 16 9 N -0.31 -7.66 12.50 -61.11 -0.76 -8.42 16 10 N -0.07 -1.74 13.25 37.02 0.49 -1.25 16 11 C 0.14 4.10 3.36 46.18 0.16 4.26 16 12 H 0.09 2.99 6.99 -2.39 -0.02 2.97 16 13 C -0.12 -3.39 6.61 31.99 0.21 -3.18 16 14 C 0.10 4.07 4.70 86.85 0.41 4.48 16 15 N -0.62 -28.73 3.21 -691.99 -2.22 -30.95 16 16 C -0.23 -13.15 10.57 84.03 0.89 -12.27 16 17 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 18 C -0.03 -1.78 5.43 84.86 0.46 -1.32 16 19 N -0.95 -59.03 13.97 21.65 0.30 -58.73 16 20 Si 0.94 46.53 24.27 68.60 1.66 48.19 16 21 H -0.26 -11.96 6.49 99.48 0.65 -11.31 16 22 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 23 H -0.28 -13.80 6.66 99.48 0.66 -13.14 16 24 C 0.13 4.74 6.88 86.73 0.60 5.33 16 25 H 0.08 0.75 7.89 -2.39 -0.02 0.73 16 26 H 0.08 1.07 6.08 -2.38 -0.01 1.05 16 27 H 0.12 0.10 6.44 -2.39 -0.02 0.09 16 28 H 0.19 0.56 7.40 -2.39 -0.02 0.54 16 29 H 0.18 0.80 8.11 -2.39 -0.02 0.78 16 30 H 0.27 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.10 2.40 6.09 -2.39 -0.01 2.38 16 33 H 0.05 2.22 6.64 -2.38 -0.02 2.21 16 34 H 0.02 0.73 5.57 -2.39 -0.01 0.72 16 35 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 36 H 0.06 1.86 6.94 -2.39 -0.02 1.84 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -84.30 303.92 4.11 -80.19 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: 1.00 Total: -2.07 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.44 Total: 17.73 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -5.95 Total: -124.43 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.66 Total: 48.19 kcal Total: -84.30 4.11 -80.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033078326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.911 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds