Wall clock time and date at job start Tue Mar 31 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99423 * 2 1 4 4 H 1.48501 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46894 * 299.99451 * 3 2 1 6 6 H 1.48497 * 109.47634 * 59.99617 * 3 2 1 7 7 C 1.38814 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00193 * 196.91982 * 7 2 1 9 9 N 1.36937 * 119.99542 * 16.92655 * 7 2 1 10 10 C 1.47158 * 120.98552 * 26.25117 * 9 7 2 11 11 C 1.53292 * 108.38235 * 129.44623 * 10 9 7 12 12 O 1.42957 * 109.26832 * 52.27623 * 11 10 9 13 13 C 1.42957 * 114.16925 * 297.50459 * 12 11 10 14 14 H 1.09005 * 109.51244 * 302.54140 * 13 12 11 15 15 C 1.53002 * 109.50842 * 182.44579 * 13 12 11 16 16 N 1.46498 * 109.47600 * 65.10354 * 15 13 12 17 17 C 1.34775 * 120.00385 * 180.02562 * 16 15 13 18 18 O 1.21611 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.47100 * 119.99892 * 179.97438 * 17 16 15 20 20 C 1.32884 * 124.57631 * 179.97438 * 19 17 16 21 21 C 1.51112 * 110.60799 * 179.97438 * 20 19 17 22 22 C 1.54571 * 104.93583 * 16.64330 * 21 20 19 23 23 C 1.51109 * 124.62384 * 359.97438 * 19 17 16 24 24 C 1.47153 * 120.97969 * 206.23369 * 9 7 2 25 25 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.67874 * 249.16824 * 10 9 7 27 27 H 1.08996 * 109.67725 * 9.68385 * 10 9 7 28 28 H 1.08998 * 109.51183 * 172.22621 * 11 10 9 29 29 H 1.09004 * 109.51153 * 292.37471 * 11 10 9 30 30 H 1.08996 * 109.47142 * 305.09492 * 15 13 12 31 31 H 1.09007 * 109.47207 * 185.09973 * 15 13 12 32 32 H 0.97000 * 119.99328 * 359.97438 * 16 15 13 33 33 H 1.07995 * 124.76554 * 359.94930 * 20 19 17 34 34 H 1.09004 * 110.36175 * 257.75127 * 21 20 19 35 35 H 1.08989 * 110.36744 * 135.54606 * 21 20 19 36 36 H 1.09004 * 110.98178 * 93.02382 * 22 21 20 37 37 H 1.08999 * 110.98525 * 216.77761 * 22 21 20 38 38 H 1.08999 * 110.36259 * 44.57209 * 23 19 17 39 39 H 1.08997 * 110.45906 * 282.30369 * 23 19 17 40 40 H 1.08997 * 109.68364 * 110.83036 * 24 9 7 41 41 H 1.09005 * 109.71350 * 350.29421 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2222 0.2727 9 7 1.3702 -2.3625 -0.3442 10 6 0.1981 -2.3455 -1.2338 11 6 0.4261 -3.3675 -2.3534 12 8 0.7674 -4.6304 -1.7771 13 6 1.9826 -4.6209 -1.0242 14 1 2.8025 -4.2877 -1.6605 15 6 2.2759 -6.0317 -0.5097 16 7 2.5331 -6.9218 -1.6445 17 6 2.8157 -8.2221 -1.4306 18 8 2.8578 -8.6564 -0.2954 19 6 3.0733 -9.1159 -2.5701 20 6 3.3602 -10.4091 -2.4644 21 6 3.5648 -11.0219 -3.8305 22 6 3.7784 -9.8198 -4.7784 23 6 3.0478 -8.6886 -4.0193 24 6 1.8343 -3.6633 0.1636 25 1 -0.4851 0.8400 -0.0004 26 1 -0.6952 -2.6128 -0.6691 27 1 0.0772 -1.3509 -1.6628 28 1 -0.4847 -3.4707 -2.9432 29 1 1.2397 -3.0291 -2.9950 30 1 1.4177 -6.3989 0.0530 31 1 3.1519 -6.0072 0.1386 32 1 2.4991 -6.5754 -2.5499 33 1 3.4373 -10.9486 -1.5321 34 1 2.6821 -11.5878 -4.1284 35 1 4.4445 -11.6653 -3.8297 36 1 4.8390 -9.5939 -4.8896 37 1 3.3163 -10.0010 -5.7489 38 1 3.5767 -7.7440 -4.1456 39 1 2.0203 -8.5973 -4.3715 40 1 1.1059 -4.0632 0.8689 41 1 2.7973 -3.5419 0.6598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035334001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:27 Heat of formation + Delta-G solvation = -47.906251 kcal Electronic energy + Delta-G solvation = -21882.979363 eV Core-core repulsion = 18570.546261 eV Total energy + Delta-G solvation = -3312.433102 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.01391 -38.61549 -37.73316 -34.90331 -34.28889 -31.63642 -30.80966 -29.55561 -28.66843 -27.41058 -25.46545 -23.23294 -22.42364 -21.67647 -20.84374 -19.83478 -18.69683 -17.33951 -16.88089 -16.18350 -15.89099 -15.70701 -15.09331 -14.69276 -14.52577 -14.37023 -13.81376 -13.34911 -13.13672 -13.06897 -12.87571 -12.74221 -12.40932 -12.20771 -11.91319 -11.57558 -11.49420 -11.44475 -11.15001 -10.88902 -10.72945 -10.42457 -10.27341 -10.01957 -9.92012 -9.66164 -9.19759 -9.09115 -8.88808 -8.57184 -6.78322 -5.86897 -3.30630 1.25988 3.26830 3.31668 3.32404 3.40149 3.42231 4.20902 4.25790 4.33969 4.41087 4.69212 4.84631 5.02716 5.12416 5.30473 5.35843 5.40317 5.47824 5.48342 5.50896 5.54344 5.66619 5.78497 5.84894 5.87857 6.00990 6.10854 6.15649 6.27214 6.33707 6.34783 6.46553 6.54943 6.73662 7.07927 7.49032 7.60846 7.68765 7.83375 8.28596 8.30759 9.08695 9.71373 10.28190 11.21249 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.003213 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.187903 B = 8711.610775 C = 8860.597832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.129 3.871 16 N -0.714 5.714 17 C 0.561 3.439 18 O -0.549 6.549 19 C -0.189 4.189 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.093 4.093 24 C 0.122 3.878 25 H 0.255 0.745 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -17.199 -10.379 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.349 3.651 18 O -0.428 6.428 19 C -0.192 4.192 20 C -0.099 4.099 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.130 4.130 24 C -0.006 4.006 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.238 0.762 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.048 0.952 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.569 -17.459 -9.567 20.673 hybrid contribution 0.383 1.412 -0.310 1.495 sum 5.953 -16.048 -9.877 19.762 Atomic orbital electron populations 1.70042 1.05284 1.25583 1.53761 1.25055 0.95354 0.98508 1.00765 0.86180 0.79317 0.83670 0.77354 1.20192 1.21474 1.21608 1.19241 0.92674 0.84433 1.42083 0.91275 1.44084 1.33623 1.01019 1.53100 1.21446 0.89134 0.98311 0.89750 1.23325 0.99006 0.84901 0.96594 1.87790 1.41315 1.32555 1.69246 1.22802 0.87527 0.93852 0.95291 0.92374 1.21436 1.01674 0.87894 0.88438 1.45862 1.70722 1.08978 1.10853 1.17978 0.76799 0.81915 0.88383 1.90784 1.52544 1.75933 1.23550 1.21951 1.06679 0.95753 0.94853 1.24094 0.92578 0.94389 0.98876 1.21472 1.02454 0.98343 0.92102 1.22427 1.00992 0.94323 0.98300 1.21257 1.01517 0.99383 0.90816 1.21444 0.98983 0.87202 0.92942 0.93527 0.95360 0.88749 0.90032 0.94116 0.90598 0.90071 0.76214 0.84455 0.89722 0.90335 0.90825 0.90516 0.90732 0.90048 0.95186 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.03 16 3 Si 0.91 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.26 -6.90 9.65 -15.06 -0.15 -7.05 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.83 3.05 -171.83 -0.52 -15.36 16 10 C 0.14 3.30 5.45 -3.53 -0.02 3.28 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.29 10.33 -35.23 -0.36 -7.66 16 13 C 0.07 1.14 2.81 -26.58 -0.07 1.07 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 2.01 5.34 -4.04 -0.02 1.99 16 16 N -0.71 -9.91 5.50 -61.49 -0.34 -10.25 16 17 C 0.56 8.25 7.79 -12.67 -0.10 8.15 16 18 O -0.55 -9.99 16.77 5.27 0.09 -9.90 16 19 C -0.19 -2.13 6.10 -102.68 -0.63 -2.76 16 20 C -0.08 -0.78 10.45 -35.95 -0.38 -1.16 16 21 C -0.11 -0.73 6.79 -26.86 -0.18 -0.91 16 22 C -0.12 -0.81 7.16 -25.07 -0.18 -0.99 16 23 C -0.09 -0.78 6.02 -26.85 -0.16 -0.94 16 24 C 0.12 2.54 6.02 -3.53 -0.02 2.52 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.44 6.14 -51.93 -0.32 2.13 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 32 H 0.40 4.89 7.48 -40.82 -0.31 4.59 16 33 H 0.14 1.37 8.04 -52.49 -0.42 0.95 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.28 7.96 -51.93 -0.41 0.86 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -31.85 334.57 -8.73 -40.57 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.49 Total: 2.35 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.73 Total: 4.17 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.24 Total: -50.85 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.28 Total: -17.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.85 -8.73 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035334001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.332 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds