Wall clock time and date at job start Tue Mar 31 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99423 * 2 1 4 4 H 1.48501 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46894 * 299.99451 * 3 2 1 6 6 H 1.48497 * 109.47634 * 59.99617 * 3 2 1 7 7 C 1.38814 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00193 * 196.91982 * 7 2 1 9 9 N 1.36937 * 119.99542 * 16.92655 * 7 2 1 10 10 C 1.47158 * 120.98552 * 26.25117 * 9 7 2 11 11 C 1.53292 * 108.38235 * 129.44623 * 10 9 7 12 12 O 1.42957 * 109.26832 * 52.27623 * 11 10 9 13 13 C 1.42957 * 114.16925 * 297.50459 * 12 11 10 14 14 H 1.09005 * 109.51244 * 302.54140 * 13 12 11 15 15 C 1.53002 * 109.50842 * 182.44579 * 13 12 11 16 16 N 1.46498 * 109.47600 * 65.10354 * 15 13 12 17 17 C 1.34775 * 120.00385 * 180.02562 * 16 15 13 18 18 O 1.21611 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.47100 * 119.99892 * 179.97438 * 17 16 15 20 20 C 1.32884 * 124.57631 * 179.97438 * 19 17 16 21 21 C 1.51112 * 110.60799 * 179.97438 * 20 19 17 22 22 C 1.54571 * 104.93583 * 16.64330 * 21 20 19 23 23 C 1.51109 * 124.62384 * 359.97438 * 19 17 16 24 24 C 1.47153 * 120.97969 * 206.23369 * 9 7 2 25 25 H 0.96997 * 120.00444 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.67874 * 249.16824 * 10 9 7 27 27 H 1.08996 * 109.67725 * 9.68385 * 10 9 7 28 28 H 1.08998 * 109.51183 * 172.22621 * 11 10 9 29 29 H 1.09004 * 109.51153 * 292.37471 * 11 10 9 30 30 H 1.08996 * 109.47142 * 305.09492 * 15 13 12 31 31 H 1.09007 * 109.47207 * 185.09973 * 15 13 12 32 32 H 0.97000 * 119.99328 * 359.97438 * 16 15 13 33 33 H 1.07995 * 124.76554 * 359.94930 * 20 19 17 34 34 H 1.09004 * 110.36175 * 257.75127 * 21 20 19 35 35 H 1.08989 * 110.36744 * 135.54606 * 21 20 19 36 36 H 1.09004 * 110.98178 * 93.02382 * 22 21 20 37 37 H 1.08999 * 110.98525 * 216.77761 * 22 21 20 38 38 H 1.08999 * 110.36259 * 44.57209 * 23 19 17 39 39 H 1.08997 * 110.45906 * 282.30369 * 23 19 17 40 40 H 1.08997 * 109.68364 * 110.83036 * 24 9 7 41 41 H 1.09005 * 109.71350 * 350.29421 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0552 -1.2222 0.2727 9 7 1.3702 -2.3625 -0.3442 10 6 0.1981 -2.3455 -1.2338 11 6 0.4261 -3.3675 -2.3534 12 8 0.7674 -4.6304 -1.7771 13 6 1.9826 -4.6209 -1.0242 14 1 2.8025 -4.2877 -1.6605 15 6 2.2759 -6.0317 -0.5097 16 7 2.5331 -6.9218 -1.6445 17 6 2.8157 -8.2221 -1.4306 18 8 2.8578 -8.6564 -0.2954 19 6 3.0733 -9.1159 -2.5701 20 6 3.3602 -10.4091 -2.4644 21 6 3.5648 -11.0219 -3.8305 22 6 3.7784 -9.8198 -4.7784 23 6 3.0478 -8.6886 -4.0193 24 6 1.8343 -3.6633 0.1636 25 1 -0.4851 0.8400 -0.0004 26 1 -0.6952 -2.6128 -0.6691 27 1 0.0772 -1.3509 -1.6628 28 1 -0.4847 -3.4707 -2.9432 29 1 1.2397 -3.0291 -2.9950 30 1 1.4177 -6.3989 0.0530 31 1 3.1519 -6.0072 0.1386 32 1 2.4991 -6.5754 -2.5499 33 1 3.4373 -10.9486 -1.5321 34 1 2.6821 -11.5878 -4.1284 35 1 4.4445 -11.6653 -3.8297 36 1 4.8390 -9.5939 -4.8896 37 1 3.3163 -10.0010 -5.7489 38 1 3.5767 -7.7440 -4.1456 39 1 2.0203 -8.5973 -4.3715 40 1 1.1059 -4.0632 0.8689 41 1 2.7973 -3.5419 0.6598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035334001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:26 Heat of formation + Delta-G solvation = -69.265695 kcal Electronic energy + Delta-G solvation = -21883.905578 eV Core-core repulsion = 18570.546261 eV Total energy + Delta-G solvation = -3313.359317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10338 -40.09649 -38.61405 -36.53488 -35.81112 -33.40366 -32.45876 -30.40821 -29.48689 -28.95250 -27.05374 -25.01502 -23.79442 -22.80761 -21.65108 -21.41127 -19.77286 -18.87600 -18.14729 -17.56101 -17.16093 -16.90171 -16.52427 -16.12905 -15.86323 -15.66035 -15.49844 -15.05322 -14.69200 -14.52963 -13.78712 -13.76781 -13.55019 -13.25347 -13.04870 -12.91606 -12.70919 -12.58243 -12.52553 -12.18967 -12.07278 -12.03438 -11.97429 -11.89043 -11.36874 -11.04925 -10.82360 -10.56482 -10.24066 -9.80309 -8.77879 -7.92847 -5.40552 0.37921 1.45622 1.47401 1.58250 2.15058 2.26473 2.47552 2.75393 3.22327 3.46345 3.54843 3.67358 3.94734 4.02598 4.11209 4.22251 4.24636 4.33642 4.45758 4.49686 4.58777 4.69224 4.72091 4.82989 4.84677 4.87702 4.92372 5.00369 5.03379 5.20473 5.22121 5.32045 5.38395 5.43236 5.53805 5.55743 5.59797 6.23438 6.30990 6.52643 7.04382 7.17548 7.72068 8.25847 9.13441 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035652 B = 0.003213 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.187903 B = 8711.610775 C = 8860.597832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.081 3.919 14 H 0.071 0.929 15 C 0.139 3.861 16 N -0.706 5.706 17 C 0.557 3.443 18 O -0.593 6.593 19 C -0.216 4.216 20 C -0.069 4.069 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.090 4.090 24 C 0.116 3.884 25 H 0.252 0.748 26 H -0.002 1.002 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.017 0.983 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 -18.364 -12.506 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.021 3.979 14 H 0.089 0.911 15 C 0.015 3.985 16 N -0.357 5.357 17 C 0.347 3.653 18 O -0.476 6.476 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.140 4.140 22 C -0.155 4.155 23 C -0.127 4.127 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.087 0.913 28 H 0.128 0.872 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.147 0.853 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.984 -18.643 -11.729 23.107 hybrid contribution -0.060 1.690 0.433 1.745 sum 6.924 -16.954 -11.296 21.517 Atomic orbital electron populations 1.70198 1.06764 1.26057 1.55172 1.25848 0.96115 1.01681 1.00960 0.85134 0.78608 0.79399 0.76839 1.18902 1.21323 1.22078 1.19589 0.93046 0.85496 1.41478 0.90928 1.44369 1.33736 1.01881 1.53807 1.21321 0.87874 0.98460 0.90622 1.23173 1.00826 0.83528 0.94854 1.87805 1.41874 1.32105 1.69173 1.22627 0.87476 0.94004 0.93788 0.91147 1.21204 1.01383 0.87009 0.88934 1.45743 1.70351 1.08738 1.10834 1.18559 0.75727 0.82143 0.88834 1.90754 1.54678 1.76643 1.25533 1.21962 1.08901 0.95801 0.95203 1.24436 0.90014 0.94041 1.00367 1.21550 1.03826 0.98691 0.89939 1.22457 1.01257 0.93105 0.98719 1.21294 1.02168 1.00332 0.88929 1.21597 0.98796 0.86324 0.94288 0.93899 0.98400 0.91311 0.87238 0.92909 0.92091 0.89417 0.74965 0.85313 0.88239 0.88618 0.90332 0.88664 0.90385 0.89678 0.96516 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.90 11.14 21.65 0.24 -54.66 16 2 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 3 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.27 -14.48 9.65 84.03 0.81 -13.67 16 8 H 0.07 3.81 7.88 -2.92 -0.02 3.79 16 9 N -0.61 -30.88 3.05 -697.54 -2.13 -33.01 16 10 C 0.14 6.87 5.45 86.35 0.47 7.34 16 11 C 0.05 1.97 6.98 72.08 0.50 2.47 16 12 O -0.39 -14.04 10.33 -148.98 -1.54 -15.58 16 13 C 0.08 2.73 2.81 30.69 0.09 2.82 16 14 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 15 C 0.14 4.24 5.34 86.38 0.46 4.71 16 16 N -0.71 -18.84 5.50 -466.71 -2.57 -21.41 16 17 C 0.56 16.09 7.79 86.57 0.67 16.77 16 18 O -0.59 -21.85 16.77 -4.07 -0.07 -21.92 16 19 C -0.22 -4.56 6.10 -18.58 -0.11 -4.67 16 20 C -0.07 -1.23 10.45 24.64 0.26 -0.98 16 21 C -0.10 -1.08 6.79 30.51 0.21 -0.87 16 22 C -0.12 -1.15 7.16 31.67 0.23 -0.92 16 23 C -0.09 -1.29 6.02 30.52 0.18 -1.11 16 24 C 0.12 4.86 6.02 86.35 0.52 5.38 16 25 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.07 3.65 6.14 -2.39 -0.01 3.64 16 28 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.41 9.26 7.48 -92.71 -0.69 8.56 16 33 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 34 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.04 7.83 -2.39 -0.02 1.02 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 41 H 0.07 2.87 7.96 -2.38 -0.02 2.85 16 Total: -1.00 -69.73 334.57 1.00 -68.72 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.32 Total: 16.89 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 4.71 Total: 14.91 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.45 Total: -109.07 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.61 Total: -37.50 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.73 1.00 -68.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035334001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.544 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds