Wall clock time and date at job start Tue Mar 31 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51527 * 57.39264 * 13 12 11 15 15 C 1.52999 * 109.51402 * 177.49519 * 13 12 11 16 16 N 1.46494 * 109.47407 * 299.99925 * 15 13 12 17 17 C 1.34773 * 120.00525 * 179.97438 * 16 15 13 18 18 O 1.21611 * 119.99979 * 0.02562 * 17 16 15 19 19 C 1.47101 * 120.00384 * 179.97438 * 17 16 15 20 20 C 1.32611 * 124.62398 * 180.02562 * 19 17 16 21 21 C 1.51110 * 110.76055 * 180.02562 * 20 19 17 22 22 C 1.54578 * 104.83938 * 16.60154 * 21 20 19 23 23 C 1.51116 * 124.61932 * 359.73706 * 19 17 16 24 24 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 25 25 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 26 26 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 27 27 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 28 28 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 29 29 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 30 30 H 1.09007 * 109.47061 * 59.99666 * 15 13 12 31 31 H 1.08997 * 109.47616 * 179.97438 * 15 13 12 32 32 H 0.97008 * 119.99727 * 359.97438 * 16 15 13 33 33 H 1.08004 * 124.62052 * 359.97438 * 20 19 17 34 34 H 1.09001 * 110.36663 * 135.44614 * 21 20 19 35 35 H 1.08999 * 110.36676 * 257.76247 * 21 20 19 36 36 H 1.09000 * 110.98047 * 93.07550 * 22 21 20 37 37 H 1.09004 * 110.98319 * 216.83598 * 22 21 20 38 38 H 1.09003 * 110.36282 * 282.23477 * 23 19 17 39 39 H 1.08998 * 110.36500 * 44.55205 * 23 19 17 40 40 H 1.08999 * 109.68106 * 249.21167 * 24 9 7 41 41 H 1.09001 * 109.68075 * 9.76662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8002 -4.2805 1.6835 15 6 2.2741 -6.0295 0.5402 16 7 2.4086 -6.9397 1.6801 17 6 2.6692 -8.2456 1.4728 18 8 2.7932 -8.6684 0.3393 19 6 2.8048 -9.1594 2.6175 20 6 3.0603 -10.4570 2.5197 21 6 3.1332 -11.0933 3.8883 22 6 2.4647 -10.0714 4.8361 23 6 2.6781 -8.7463 4.0656 24 6 1.8304 -3.6636 -0.1493 25 1 -0.4849 0.8401 -0.0040 26 1 0.0770 -1.3425 1.6699 27 1 -0.6958 -2.6080 0.6813 28 1 1.2377 -3.0144 3.0103 29 1 -0.4867 -3.4548 2.9602 30 1 1.4553 -6.3638 -0.0970 31 1 3.2013 -6.0249 -0.0328 32 1 2.3101 -6.6024 2.5843 33 1 3.1968 -10.9870 1.5886 34 1 2.5850 -12.0353 3.8984 35 1 4.1719 -11.2549 4.1767 36 1 1.4039 -10.2897 4.9597 37 1 2.9707 -10.0449 5.8012 38 1 3.5901 -8.2518 4.4001 39 1 1.8187 -8.0892 4.1988 40 1 1.0990 -4.0643 -0.8511 41 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035334003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:30 Heat of formation + Delta-G solvation = -47.712563 kcal Electronic energy + Delta-G solvation = -21899.023969 eV Core-core repulsion = 18586.599266 eV Total energy + Delta-G solvation = -3312.424703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01448 -38.60685 -37.72817 -34.90005 -34.27727 -31.62480 -30.80520 -29.55674 -28.64974 -27.41426 -25.45885 -23.23138 -22.41924 -21.66493 -20.83181 -19.83656 -18.69406 -17.33421 -16.87892 -16.08522 -16.06689 -15.57817 -15.09925 -14.74770 -14.51181 -14.33139 -13.81852 -13.36365 -13.16286 -13.02880 -12.88804 -12.73386 -12.40731 -12.19893 -11.89495 -11.55715 -11.50101 -11.42469 -11.15029 -10.88776 -10.72358 -10.42889 -10.27428 -10.01897 -9.92335 -9.65794 -9.20207 -9.09153 -8.87918 -8.57067 -6.78221 -5.87027 -3.30763 1.27359 3.27543 3.31793 3.32707 3.40131 3.42259 4.20225 4.26935 4.34866 4.41108 4.70716 4.85482 5.03435 5.13353 5.30382 5.36116 5.39978 5.47331 5.48497 5.52517 5.55120 5.67449 5.77765 5.85420 5.88146 6.01576 6.11453 6.16324 6.27743 6.34666 6.34905 6.46715 6.55336 6.73623 7.07868 7.49020 7.62139 7.68777 7.82950 8.29316 8.30930 9.08678 9.71299 10.28260 11.21046 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.003228 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.984565 B = 8673.343455 C = 8924.285477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.713 5.713 17 C 0.561 3.439 18 O -0.549 6.549 19 C -0.189 4.189 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.093 4.093 24 C 0.122 3.878 25 H 0.255 0.745 26 H 0.094 0.906 27 H 0.028 0.972 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.404 0.596 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -17.319 10.485 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.363 5.363 17 C 0.349 3.651 18 O -0.429 6.429 19 C -0.192 4.192 20 C -0.100 4.100 21 C -0.144 4.144 22 C -0.160 4.160 23 C -0.131 4.131 24 C -0.006 4.006 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.239 0.761 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.682 -17.570 9.681 20.600 hybrid contribution 0.396 1.418 0.289 1.500 sum 5.079 -16.152 9.970 19.649 Atomic orbital electron populations 1.70047 1.05291 1.25572 1.53755 1.25065 0.95360 0.98537 1.00736 0.86175 0.79319 0.83651 0.77350 1.20193 1.21613 1.21477 1.19245 0.92663 0.84545 1.41995 0.91270 1.44100 1.33669 1.01009 1.53040 1.21440 0.89115 0.98366 0.89709 1.23323 0.99011 0.84813 0.96653 1.87778 1.41242 1.32448 1.69463 1.22896 0.87477 0.93823 0.95306 0.92320 1.21448 1.02096 0.87435 0.88458 1.45835 1.71606 1.08034 1.10840 1.17983 0.76703 0.82023 0.88398 1.90782 1.51429 1.76881 1.23775 1.21884 1.06987 0.95448 0.94865 1.24020 0.92570 0.94511 0.98889 1.21475 1.01661 0.99154 0.92063 1.22462 1.01301 0.94076 0.98204 1.21307 1.02536 0.98451 0.90759 1.21534 0.98978 0.87208 0.92854 0.93531 0.88770 0.95373 0.94100 0.90032 0.90669 0.90132 0.76124 0.84515 0.90316 0.89753 0.90738 0.90568 0.90174 0.90530 0.95159 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.14 55.49 0.62 -25.23 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.91 9.65 -15.06 -0.15 -7.05 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 9 N -0.59 -14.82 3.04 -171.57 -0.52 -15.34 16 10 C 0.14 3.30 5.44 -3.53 -0.02 3.28 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.25 10.13 -35.23 -0.36 -7.61 16 13 C 0.06 1.13 2.88 -26.36 -0.08 1.06 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 2.01 5.37 -4.05 -0.02 1.99 16 16 N -0.71 -9.95 5.44 -61.50 -0.33 -10.28 16 17 C 0.56 8.27 7.79 -12.67 -0.10 8.17 16 18 O -0.55 -10.02 16.77 5.27 0.09 -9.93 16 19 C -0.19 -2.14 6.09 -102.73 -0.63 -2.77 16 20 C -0.08 -0.79 10.43 -36.01 -0.38 -1.17 16 21 C -0.11 -0.73 6.80 -26.85 -0.18 -0.91 16 22 C -0.12 -0.83 7.17 -24.97 -0.18 -1.01 16 23 C -0.09 -0.79 6.04 -26.75 -0.16 -0.95 16 24 C 0.12 2.54 6.05 -3.31 -0.02 2.52 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 4.96 7.35 -40.82 -0.30 4.66 16 33 H 0.14 1.37 8.03 -52.48 -0.42 0.95 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.64 7.82 -51.93 -0.41 0.24 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.28 7.96 -51.93 -0.41 0.86 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.79 334.27 -8.71 -40.50 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.48 Total: 2.44 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.73 Total: 4.13 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.24 Total: -50.86 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.27 Total: -17.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.79 -8.71 -40.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035334003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.214 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds