Wall clock time and date at job start Tue Mar 31 2020 02:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48494 * 109.47313 * 179.72456 * 3 2 1 5 5 H 1.48498 * 109.47337 * 299.72614 * 3 2 1 6 6 H 1.48503 * 109.46949 * 59.72643 * 3 2 1 7 7 C 1.38821 * 119.99631 * 179.72621 * 2 1 3 8 8 H 1.08005 * 119.99676 * 163.08082 * 7 2 1 9 9 N 1.36931 * 119.99883 * 343.07823 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.78208 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51527 * 57.39264 * 13 12 11 15 15 C 1.52999 * 109.51402 * 177.49519 * 13 12 11 16 16 N 1.46494 * 109.47407 * 299.99925 * 15 13 12 17 17 C 1.34773 * 120.00525 * 179.97438 * 16 15 13 18 18 O 1.21611 * 119.99979 * 0.02562 * 17 16 15 19 19 C 1.47101 * 120.00384 * 179.97438 * 17 16 15 20 20 C 1.32611 * 124.62398 * 180.02562 * 19 17 16 21 21 C 1.51110 * 110.76055 * 180.02562 * 20 19 17 22 22 C 1.54578 * 104.83938 * 16.60154 * 21 20 19 23 23 C 1.51116 * 124.61932 * 359.73706 * 19 17 16 24 24 C 1.47154 * 120.97887 * 153.49763 * 9 7 2 25 25 H 0.97003 * 119.99304 * 0.27043 * 1 2 3 26 26 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 27 27 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 28 28 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 29 29 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 30 30 H 1.09007 * 109.47061 * 59.99666 * 15 13 12 31 31 H 1.08997 * 109.47616 * 179.97438 * 15 13 12 32 32 H 0.97008 * 119.99727 * 359.97438 * 16 15 13 33 33 H 1.08004 * 124.62052 * 359.97438 * 20 19 17 34 34 H 1.09001 * 110.36663 * 135.44614 * 21 20 19 35 35 H 1.08999 * 110.36676 * 257.76247 * 21 20 19 36 36 H 1.09000 * 110.98047 * 93.07550 * 22 21 20 37 37 H 1.09004 * 110.98319 * 216.83598 * 22 21 20 38 38 H 1.09003 * 110.36282 * 282.23477 * 23 19 17 39 39 H 1.08998 * 110.36500 * 44.55205 * 23 19 17 40 40 H 1.08999 * 109.68106 * 249.21167 * 24 9 7 41 41 H 1.09001 * 109.68075 * 9.76662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0067 5 1 1.8967 2.3935 -1.2158 6 1 1.8866 2.3992 1.2092 7 6 2.0102 -1.2023 0.0057 8 1 3.0552 -1.2238 -0.2664 9 7 1.3699 -2.3607 0.3565 10 6 0.1974 -2.3390 1.2452 11 6 0.4242 -3.3556 2.3700 12 8 0.7647 -4.6212 1.7989 13 6 1.9810 -4.6162 1.0477 14 1 2.8002 -4.2805 1.6835 15 6 2.2741 -6.0295 0.5402 16 7 2.4086 -6.9397 1.6801 17 6 2.6692 -8.2456 1.4728 18 8 2.7932 -8.6684 0.3393 19 6 2.8048 -9.1594 2.6175 20 6 3.0603 -10.4570 2.5197 21 6 3.1332 -11.0933 3.8883 22 6 2.4647 -10.0714 4.8361 23 6 2.6781 -8.7463 4.0656 24 6 1.8304 -3.6636 -0.1493 25 1 -0.4849 0.8401 -0.0040 26 1 0.0770 -1.3425 1.6699 27 1 -0.6958 -2.6080 0.6813 28 1 1.2377 -3.0144 3.0103 29 1 -0.4867 -3.4548 2.9602 30 1 1.4553 -6.3638 -0.0970 31 1 3.2013 -6.0249 -0.0328 32 1 2.3101 -6.6024 2.5843 33 1 3.1968 -10.9870 1.5886 34 1 2.5850 -12.0353 3.8984 35 1 4.1719 -11.2549 4.1767 36 1 1.4039 -10.2897 4.9597 37 1 2.9707 -10.0449 5.8012 38 1 3.5901 -8.2518 4.4001 39 1 1.8187 -8.0892 4.1988 40 1 1.0990 -4.0643 -0.8511 41 1 2.7921 -3.5446 -0.6485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035334003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:29 Heat of formation + Delta-G solvation = -68.950763 kcal Electronic energy + Delta-G solvation = -21899.944927 eV Core-core repulsion = 18586.599266 eV Total energy + Delta-G solvation = -3313.345661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10469 -40.08490 -38.61794 -36.53758 -35.79257 -33.39671 -32.44697 -30.41428 -29.47961 -28.94658 -27.05213 -25.00836 -23.78979 -22.79470 -21.64033 -21.42729 -19.76992 -18.87438 -18.14381 -17.54636 -17.18594 -16.89851 -16.43418 -16.18843 -15.90380 -15.62374 -15.48912 -15.05404 -14.70253 -14.51958 -13.80255 -13.74829 -13.55113 -13.25178 -13.05440 -12.90584 -12.70541 -12.57356 -12.51548 -12.18436 -12.07560 -12.04071 -11.96709 -11.89328 -11.37318 -11.03998 -10.82182 -10.56362 -10.23440 -9.81133 -8.77687 -7.92913 -5.40641 0.38860 1.45526 1.47364 1.58223 2.15116 2.26786 2.47690 2.75884 3.22315 3.46873 3.55286 3.67286 3.95325 4.01871 4.11449 4.22163 4.24759 4.33827 4.45889 4.49402 4.59857 4.69735 4.73021 4.82956 4.84139 4.88036 4.93588 5.00196 5.03502 5.20386 5.22098 5.32484 5.38419 5.43817 5.53947 5.56292 5.59866 6.23279 6.31090 6.53361 7.04424 7.17945 7.72095 8.25963 9.13248 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037325 B = 0.003228 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.984565 B = 8673.343455 C = 8924.285477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.267 4.267 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.081 3.919 14 H 0.071 0.929 15 C 0.139 3.861 16 N -0.705 5.705 17 C 0.557 3.443 18 O -0.594 6.594 19 C -0.215 4.215 20 C -0.069 4.069 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.090 4.090 24 C 0.116 3.884 25 H 0.252 0.748 26 H 0.068 0.932 27 H -0.002 1.002 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.017 0.983 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -18.516 12.632 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.309 6.309 13 C 0.021 3.979 14 H 0.089 0.911 15 C 0.014 3.986 16 N -0.356 5.356 17 C 0.347 3.653 18 O -0.476 6.476 19 C -0.218 4.218 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.156 4.156 23 C -0.127 4.127 24 C -0.010 4.010 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.251 0.749 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.994 -18.787 11.862 23.013 hybrid contribution -0.011 1.708 -0.458 1.768 sum 5.984 -17.079 11.403 21.390 Atomic orbital electron populations 1.70202 1.06768 1.26043 1.55164 1.25858 0.96121 1.01704 1.00934 0.85131 0.78608 0.79392 0.76837 1.18911 1.22063 1.21338 1.19592 0.93033 0.85614 1.41391 0.90938 1.44385 1.33782 1.01865 1.53746 1.21317 0.87846 0.98497 0.90609 1.23170 1.00841 0.83457 0.94878 1.87794 1.41762 1.31976 1.69371 1.22716 0.87441 0.93984 0.93762 0.91130 1.21224 1.01897 0.86584 0.88849 1.45722 1.71273 1.07790 1.10797 1.18563 0.75579 0.82293 0.88864 1.90753 1.53579 1.77562 1.25746 1.21896 1.09337 0.95400 0.95195 1.24360 0.89959 0.94202 1.00390 1.21552 1.02976 0.99563 0.89847 1.22494 1.01745 0.92646 0.98724 1.21341 1.02937 0.99566 0.88900 1.21686 0.98774 0.86315 0.94232 0.93903 0.91349 0.98422 0.92913 0.87202 0.92171 0.89381 0.74926 0.85385 0.88723 0.88045 0.90547 0.88568 0.89302 0.90657 0.96511 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 11.14 21.65 0.24 -54.64 16 2 C -0.05 -2.79 4.95 84.86 0.42 -2.38 16 3 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.27 -14.49 9.65 84.04 0.81 -13.68 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 9 N -0.61 -30.86 3.04 -696.72 -2.12 -32.98 16 10 C 0.14 6.87 5.44 86.35 0.47 7.34 16 11 C 0.05 1.97 6.99 72.08 0.50 2.48 16 12 O -0.39 -13.92 10.13 -148.98 -1.51 -15.43 16 13 C 0.08 2.73 2.88 30.84 0.09 2.82 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.14 4.23 5.37 86.38 0.46 4.70 16 16 N -0.71 -18.92 5.44 -466.73 -2.54 -21.46 16 17 C 0.56 16.14 7.79 86.57 0.67 16.82 16 18 O -0.59 -21.90 16.77 -4.07 -0.07 -21.96 16 19 C -0.22 -4.58 6.09 -18.56 -0.11 -4.69 16 20 C -0.07 -1.25 10.43 24.66 0.26 -0.99 16 21 C -0.10 -1.07 6.80 30.51 0.21 -0.87 16 22 C -0.12 -1.19 7.17 31.73 0.23 -0.97 16 23 C -0.09 -1.31 6.04 30.58 0.18 -1.12 16 24 C 0.12 4.86 6.05 86.50 0.52 5.38 16 25 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.07 3.63 6.14 -2.39 -0.01 3.61 16 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.41 9.40 7.35 -92.70 -0.68 8.72 16 33 H 0.13 2.48 8.03 -2.91 -0.02 2.46 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.09 7.82 -2.39 -0.02 1.07 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 2.87 7.96 -2.39 -0.02 2.85 16 Total: -1.00 -69.64 334.27 1.09 -68.55 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.34 Total: 17.01 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 4.72 Total: 14.84 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -4.42 Total: -109.08 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.58 Total: -37.39 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.64 1.09 -68.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035334003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.402 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds