Wall clock time and date at job start Tue Mar 31 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48497 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47059 * 300.00295 * 3 2 1 6 6 H 1.48497 * 109.47107 * 59.99869 * 3 2 1 7 7 C 1.38819 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 196.91993 * 7 2 1 9 9 N 1.36936 * 119.99774 * 16.91878 * 7 2 1 10 10 C 1.47144 * 120.98701 * 26.22317 * 9 7 2 11 11 C 1.53296 * 108.38731 * 129.47507 * 10 9 7 12 12 O 1.42969 * 109.21780 * 52.30464 * 11 10 9 13 13 C 1.42960 * 114.16469 * 297.41741 * 12 11 10 14 14 H 1.08990 * 109.51487 * 302.60672 * 13 12 11 15 15 C 1.53006 * 109.51083 * 182.50410 * 13 12 11 16 16 N 1.46501 * 109.46665 * 65.10277 * 15 13 12 17 17 C 1.34782 * 119.99835 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99843 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.56367 * 325.69822 * 19 17 16 21 21 C 1.53001 * 117.49926 * 111.39439 * 19 17 16 22 22 C 1.52999 * 60.03114 * 107.49857 * 21 19 17 23 23 C 1.52997 * 138.58597 * 229.09515 * 22 21 19 24 24 C 1.52996 * 138.59016 * 130.88457 * 22 21 19 25 25 C 1.47177 * 120.93895 * 206.20340 * 9 7 2 26 26 H 0.97003 * 119.99588 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.68365 * 9.75515 * 10 9 7 28 28 H 1.09002 * 109.71574 * 249.22163 * 10 9 7 29 29 H 1.08995 * 109.51167 * 292.38477 * 11 10 9 30 30 H 1.08996 * 109.51265 * 172.22493 * 11 10 9 31 31 H 1.09003 * 109.47245 * 305.10893 * 15 13 12 32 32 H 1.09001 * 109.47431 * 185.10114 * 15 13 12 33 33 H 0.97000 * 120.00317 * 359.97438 * 16 15 13 34 34 H 1.08998 * 117.49872 * 359.97438 * 21 19 17 35 35 H 1.09002 * 117.49422 * 214.99899 * 21 19 17 36 36 H 1.09000 * 117.49543 * 336.59633 * 23 22 21 37 37 H 1.08996 * 117.49549 * 121.61541 * 23 22 21 38 38 H 1.08994 * 117.49710 * 238.37814 * 24 22 21 39 39 H 1.08996 * 117.49768 * 23.37351 * 24 22 21 40 40 H 1.09004 * 109.64357 * 110.77572 * 25 9 7 41 41 H 1.09002 * 109.72668 * 350.21934 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2227 0.2717 9 7 1.3699 -2.3623 -0.3462 10 6 0.1974 -2.3445 -1.2350 11 6 0.4244 -3.3657 -2.3555 12 8 0.7650 -4.6289 -1.7790 13 6 1.9813 -4.6205 -1.0278 14 1 2.8005 -4.2875 -1.6650 15 6 2.2745 -6.0317 -0.5142 16 7 2.5294 -6.9214 -1.6498 17 6 2.8126 -8.2218 -1.4367 18 8 2.8559 -8.6554 -0.3049 19 6 3.0754 -9.1369 -2.6048 20 1 2.5022 -8.9242 -3.5072 21 6 4.5001 -9.6660 -2.7812 22 6 3.3914 -10.6028 -2.2976 23 6 3.1541 -11.6177 -1.1775 24 6 2.8361 -11.9899 -2.6271 25 6 1.8352 -3.6633 0.1606 26 1 -0.4850 0.8401 -0.0004 27 1 0.0769 -1.3496 -1.6640 28 1 -0.6961 -2.6114 -0.6705 29 1 1.2379 -3.0273 -2.9972 30 1 -0.4867 -3.4683 -2.9447 31 1 1.4167 -6.3987 0.0495 32 1 3.1514 -6.0080 0.1329 33 1 2.4944 -6.5747 -2.5550 34 1 5.2475 -9.3519 -2.0526 35 1 4.8643 -9.8010 -3.7997 36 1 4.0307 -12.0771 -0.7207 37 1 2.3130 -11.4402 -0.5074 38 1 1.7859 -12.0572 -2.9106 39 1 3.5033 -12.6939 -3.1243 40 1 1.1074 -4.0631 0.8668 41 1 2.7990 -3.5422 0.6551 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035531875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:25 Heat of formation + Delta-G solvation = 2.507960 kcal Electronic energy + Delta-G solvation = -21729.576133 eV Core-core repulsion = 18419.329155 eV Total energy + Delta-G solvation = -3310.246978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01629 -38.62009 -37.52015 -34.85423 -34.27258 -32.85050 -31.53361 -30.64225 -27.64653 -25.88990 -23.77448 -23.14744 -22.58600 -21.73168 -20.63047 -19.77758 -19.13481 -17.19094 -16.88116 -16.10477 -15.92576 -15.23762 -15.07684 -15.01993 -14.71292 -14.37237 -14.15852 -13.80709 -13.27712 -13.14032 -12.76312 -12.62755 -12.41311 -11.84009 -11.66899 -11.57813 -11.15538 -10.89640 -10.73484 -10.44328 -10.41426 -10.31719 -10.27545 -10.20622 -10.01517 -9.80002 -9.62233 -9.09419 -8.94834 -8.57578 -6.78889 -5.87380 -3.31076 2.49423 3.04839 3.31579 3.39624 3.41791 3.53150 3.66537 4.08100 4.22176 4.40506 4.56857 4.63605 4.95612 5.11655 5.23160 5.30114 5.35053 5.40268 5.43802 5.45964 5.47862 5.50076 5.73022 5.74377 5.78119 5.85283 5.98419 6.01938 6.13162 6.26950 6.34126 6.45887 6.54624 6.72839 7.07376 7.48522 7.59805 7.68214 7.82763 8.29542 8.30738 9.08251 9.70882 10.27636 11.20777 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.043195 B = 0.003017 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.074216 B = 9277.543141 C = 9438.652529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.131 3.869 16 N -0.717 5.717 17 C 0.538 3.462 18 O -0.540 6.540 19 C -0.140 4.140 20 H 0.124 0.876 21 C -0.101 4.101 22 C -0.202 4.202 23 C -0.113 4.113 24 C -0.131 4.131 25 C 0.121 3.879 26 H 0.255 0.745 27 H 0.094 0.906 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.030 0.970 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -17.956 -8.234 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.006 3.994 14 H 0.077 0.923 15 C 0.007 3.993 16 N -0.368 5.368 17 C 0.323 3.677 18 O -0.417 6.417 19 C -0.161 4.161 20 H 0.142 0.858 21 C -0.138 4.138 22 C -0.203 4.203 23 C -0.150 4.150 24 C -0.168 4.168 25 C -0.006 4.006 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.048 0.952 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.735 -18.237 -7.400 20.499 hybrid contribution 0.341 1.525 -0.456 1.627 sum 6.076 -16.712 -7.856 19.441 Atomic orbital electron populations 1.70047 1.05288 1.25581 1.53759 1.25058 0.95359 0.98519 1.00765 0.86177 0.79309 0.83659 0.77359 1.20196 1.21474 1.21602 1.19244 0.92667 0.84458 1.42070 0.91275 1.44087 1.33571 1.01005 1.53164 1.21444 0.89122 0.98327 0.89748 1.23328 0.99019 0.84883 0.96594 1.87791 1.41227 1.32587 1.69322 1.22798 0.87510 0.93850 0.95290 0.92349 1.21416 1.01564 0.87893 0.88430 1.45902 1.71156 1.08890 1.10821 1.19645 0.76502 0.82056 0.89451 1.90688 1.51495 1.75650 1.23868 1.21992 1.01708 0.93322 0.99116 0.85837 1.22657 0.89816 0.98927 1.02399 1.21157 1.03943 0.87605 1.07560 1.22593 1.03113 0.98396 0.90902 1.22761 1.01314 0.93629 0.99063 1.21451 0.98951 0.87218 0.92961 0.93526 0.88756 0.95363 0.94090 0.90033 0.90727 0.90197 0.76245 0.88060 0.87639 0.88581 0.88148 0.88546 0.88409 0.95223 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 N -0.59 -14.81 3.05 -171.81 -0.52 -15.33 16 10 C 0.14 3.29 5.44 -3.54 -0.02 3.28 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.26 10.33 -35.23 -0.36 -7.62 16 13 C 0.07 1.14 2.81 -26.58 -0.07 1.06 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.13 2.00 5.34 -4.04 -0.02 1.98 16 16 N -0.72 -9.56 5.51 -60.29 -0.33 -9.90 16 17 C 0.54 7.51 7.61 -10.98 -0.08 7.43 16 18 O -0.54 -9.44 16.25 5.56 0.09 -9.35 16 19 C -0.14 -1.49 6.19 -91.73 -0.57 -2.06 16 20 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 21 C -0.10 -0.91 10.23 -26.73 -0.27 -1.18 16 22 C -0.20 -2.09 5.06 -154.48 -0.78 -2.87 16 23 C -0.11 -1.14 10.17 -26.73 -0.27 -1.41 16 24 C -0.13 -1.07 10.53 -26.73 -0.28 -1.35 16 25 C 0.12 2.53 6.02 -3.52 -0.02 2.50 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.09 2.44 6.14 -51.92 -0.32 2.12 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.40 4.63 8.47 -40.82 -0.35 4.29 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -31.79 340.93 -9.32 -41.11 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.55 Total: 3.63 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.37 Total: 1.30 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.24 Total: -50.47 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.27 Total: -16.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -9.32 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035531875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.615 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds