Wall clock time and date at job start Tue Mar 31 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00433 * 2 1 4 4 H 1.48497 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47059 * 300.00295 * 3 2 1 6 6 H 1.48497 * 109.47107 * 59.99869 * 3 2 1 7 7 C 1.38819 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 196.91993 * 7 2 1 9 9 N 1.36936 * 119.99774 * 16.91878 * 7 2 1 10 10 C 1.47144 * 120.98701 * 26.22317 * 9 7 2 11 11 C 1.53296 * 108.38731 * 129.47507 * 10 9 7 12 12 O 1.42969 * 109.21780 * 52.30464 * 11 10 9 13 13 C 1.42960 * 114.16469 * 297.41741 * 12 11 10 14 14 H 1.08990 * 109.51487 * 302.60672 * 13 12 11 15 15 C 1.53006 * 109.51083 * 182.50410 * 13 12 11 16 16 N 1.46501 * 109.46665 * 65.10277 * 15 13 12 17 17 C 1.34782 * 119.99835 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99843 * 180.02562 * 17 16 15 20 20 H 1.09001 * 115.56367 * 325.69822 * 19 17 16 21 21 C 1.53001 * 117.49926 * 111.39439 * 19 17 16 22 22 C 1.52999 * 60.03114 * 107.49857 * 21 19 17 23 23 C 1.52997 * 138.58597 * 229.09515 * 22 21 19 24 24 C 1.52996 * 138.59016 * 130.88457 * 22 21 19 25 25 C 1.47177 * 120.93895 * 206.20340 * 9 7 2 26 26 H 0.97003 * 119.99588 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.68365 * 9.75515 * 10 9 7 28 28 H 1.09002 * 109.71574 * 249.22163 * 10 9 7 29 29 H 1.08995 * 109.51167 * 292.38477 * 11 10 9 30 30 H 1.08996 * 109.51265 * 172.22493 * 11 10 9 31 31 H 1.09003 * 109.47245 * 305.10893 * 15 13 12 32 32 H 1.09001 * 109.47431 * 185.10114 * 15 13 12 33 33 H 0.97000 * 120.00317 * 359.97438 * 16 15 13 34 34 H 1.08998 * 117.49872 * 359.97438 * 21 19 17 35 35 H 1.09002 * 117.49422 * 214.99899 * 21 19 17 36 36 H 1.09000 * 117.49543 * 336.59633 * 23 22 21 37 37 H 1.08996 * 117.49549 * 121.61541 * 23 22 21 38 38 H 1.08994 * 117.49710 * 238.37814 * 24 22 21 39 39 H 1.08996 * 117.49768 * 23.37351 * 24 22 21 40 40 H 1.09004 * 109.64357 * 110.77572 * 25 9 7 41 41 H 1.09002 * 109.72668 * 350.21934 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2227 0.2717 9 7 1.3699 -2.3623 -0.3462 10 6 0.1974 -2.3445 -1.2350 11 6 0.4244 -3.3657 -2.3555 12 8 0.7650 -4.6289 -1.7790 13 6 1.9813 -4.6205 -1.0278 14 1 2.8005 -4.2875 -1.6650 15 6 2.2745 -6.0317 -0.5142 16 7 2.5294 -6.9214 -1.6498 17 6 2.8126 -8.2218 -1.4367 18 8 2.8559 -8.6554 -0.3049 19 6 3.0754 -9.1369 -2.6048 20 1 2.5022 -8.9242 -3.5072 21 6 4.5001 -9.6660 -2.7812 22 6 3.3914 -10.6028 -2.2976 23 6 3.1541 -11.6177 -1.1775 24 6 2.8361 -11.9899 -2.6271 25 6 1.8352 -3.6633 0.1606 26 1 -0.4850 0.8401 -0.0004 27 1 0.0769 -1.3496 -1.6640 28 1 -0.6961 -2.6114 -0.6705 29 1 1.2379 -3.0273 -2.9972 30 1 -0.4867 -3.4683 -2.9447 31 1 1.4167 -6.3987 0.0495 32 1 3.1514 -6.0080 0.1329 33 1 2.4944 -6.5747 -2.5550 34 1 5.2475 -9.3519 -2.0526 35 1 4.8643 -9.8010 -3.7997 36 1 4.0307 -12.0771 -0.7207 37 1 2.3130 -11.4402 -0.5074 38 1 1.7859 -12.0572 -2.9106 39 1 3.5033 -12.6939 -3.1243 40 1 1.1074 -4.0631 0.8668 41 1 2.7990 -3.5422 0.6551 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035531875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:24 Heat of formation + Delta-G solvation = -18.427894 kcal Electronic energy + Delta-G solvation = -21730.483980 eV Core-core repulsion = 18419.329155 eV Total energy + Delta-G solvation = -3311.154825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09025 -40.11000 -38.43134 -36.50175 -35.74074 -33.67855 -33.31258 -32.25491 -29.31736 -27.47855 -25.18360 -24.68057 -23.26795 -23.15873 -21.80128 -21.20303 -20.07688 -18.89498 -18.13109 -17.53772 -17.18099 -16.82577 -16.19829 -16.13241 -15.85487 -15.68780 -15.52895 -15.27177 -15.02490 -14.66730 -14.49188 -13.78042 -13.45434 -13.23797 -13.03517 -12.72966 -12.62454 -12.52465 -12.34619 -12.18977 -12.06836 -11.89277 -11.36445 -11.17986 -11.07612 -10.92754 -10.83788 -10.75591 -10.55305 -10.12277 -8.78097 -7.93115 -5.40764 1.45390 1.47155 1.47722 1.58043 2.03766 2.46589 2.73667 2.76875 2.89190 3.22126 3.35119 3.46856 3.78671 3.87366 3.96570 4.05049 4.12716 4.23922 4.45388 4.49997 4.51168 4.58623 4.64668 4.69520 4.75077 4.77212 4.79788 4.83683 4.87741 5.03135 5.03552 5.06137 5.22164 5.28655 5.38531 5.53575 5.59567 6.23562 6.30970 6.55578 7.04190 7.23751 7.71934 8.25576 9.13169 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.043195 B = 0.003017 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.074216 B = 9277.543141 C = 9438.652529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.081 3.919 14 H 0.072 0.928 15 C 0.141 3.859 16 N -0.709 5.709 17 C 0.534 3.466 18 O -0.582 6.582 19 C -0.147 4.147 20 H 0.148 0.852 21 C -0.084 4.084 22 C -0.227 4.227 23 C -0.134 4.134 24 C -0.106 4.106 25 C 0.116 3.884 26 H 0.252 0.748 27 H 0.068 0.932 28 H -0.002 1.002 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.415 0.585 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.016 0.984 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -19.034 -10.372 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.021 3.979 14 H 0.089 0.911 15 C 0.017 3.983 16 N -0.360 5.360 17 C 0.322 3.678 18 O -0.462 6.462 19 C -0.168 4.168 20 H 0.166 0.834 21 C -0.121 4.121 22 C -0.228 4.228 23 C -0.171 4.171 24 C -0.142 4.142 25 C -0.010 4.010 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.016 0.984 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.252 0.748 34 H 0.110 0.890 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.034 0.966 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.280 -19.337 -9.569 22.770 hybrid contribution -0.151 1.816 0.296 1.846 sum 7.129 -17.521 -9.273 21.066 Atomic orbital electron populations 1.70203 1.06779 1.26048 1.55203 1.25853 0.96116 1.01702 1.00982 0.85133 0.78616 0.79394 0.76838 1.18878 1.21340 1.22077 1.19594 0.93042 0.85521 1.41421 0.90910 1.44372 1.33677 1.01885 1.53864 1.21321 0.87864 0.98484 0.90643 1.23169 1.00833 0.83526 0.94828 1.87806 1.41826 1.32084 1.69242 1.22625 0.87448 0.94062 0.93730 0.91059 1.21157 1.01178 0.86982 0.89001 1.45792 1.70747 1.08662 1.10796 1.20288 0.75351 0.82222 0.89956 1.90672 1.53334 1.76340 1.25856 1.22025 1.03639 0.92793 0.98355 0.83430 1.22765 0.88586 0.97005 1.03710 1.21457 1.05056 0.88128 1.08169 1.22600 1.02888 0.99769 0.91864 1.22852 1.02068 0.92332 0.96951 1.21611 0.98729 0.86346 0.94359 0.93907 0.91345 0.98438 0.92868 0.87279 0.92374 0.89601 0.74842 0.88983 0.84588 0.87976 0.90309 0.87952 0.86164 0.96635 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 11.14 21.65 0.24 -54.68 16 2 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 3 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.27 -14.43 9.65 84.04 0.81 -13.62 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 9 N -0.61 -30.79 3.05 -697.48 -2.13 -32.92 16 10 C 0.14 6.84 5.44 86.36 0.47 7.31 16 11 C 0.05 1.97 6.99 72.08 0.50 2.47 16 12 O -0.39 -13.87 10.33 -148.98 -1.54 -15.41 16 13 C 0.08 2.70 2.81 30.69 0.09 2.78 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.14 4.18 5.34 86.38 0.46 4.65 16 16 N -0.71 -17.69 5.51 -463.03 -2.55 -20.24 16 17 C 0.53 14.31 7.61 87.66 0.67 14.98 16 18 O -0.58 -20.41 16.25 -3.03 -0.05 -20.46 16 19 C -0.15 -2.78 6.19 -11.52 -0.07 -2.85 16 20 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 21 C -0.08 -1.27 10.23 30.59 0.31 -0.96 16 22 C -0.23 -4.24 5.06 -52.16 -0.26 -4.51 16 23 C -0.13 -2.62 10.17 30.59 0.31 -2.31 16 24 C -0.11 -1.46 10.53 30.59 0.32 -1.14 16 25 C 0.12 4.81 6.02 86.35 0.52 5.33 16 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.07 3.63 6.14 -2.38 -0.01 3.61 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.42 8.42 8.47 -92.71 -0.79 7.64 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 Total: -1.00 -69.77 340.93 0.79 -68.98 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.24 Total: 18.98 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.55 Total: 9.74 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.44 Total: -107.83 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.59 Total: -35.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.77 0.79 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035531875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.549 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds