Wall clock time and date at job start Tue Mar 31 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47249 * 299.99918 * 3 2 1 6 6 H 1.48504 * 109.47442 * 59.99964 * 3 2 1 7 7 C 1.38806 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00312 * 196.91226 * 7 2 1 9 9 N 1.36939 * 120.00202 * 16.91534 * 7 2 1 10 10 C 1.47153 * 120.98189 * 206.22374 * 9 7 2 11 11 C 1.53293 * 108.38481 * 230.55597 * 10 9 7 12 12 O 1.42963 * 109.21969 * 307.69670 * 11 10 9 13 13 C 1.42962 * 114.16795 * 62.58369 * 12 11 10 14 14 H 1.08996 * 109.51520 * 57.38776 * 13 12 11 15 15 C 1.52998 * 109.51682 * 177.49592 * 13 12 11 16 16 N 1.46507 * 109.46737 * 299.99593 * 15 13 12 17 17 C 1.34776 * 119.99710 * 179.97438 * 16 15 13 18 18 O 1.21274 * 120.00321 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99643 * 180.02562 * 17 16 15 20 20 H 1.08993 * 115.56292 * 325.69894 * 19 17 16 21 21 C 1.53002 * 117.50255 * 111.39501 * 19 17 16 22 22 C 1.52989 * 59.99963 * 107.48671 * 21 19 17 23 23 C 1.52994 * 138.58768 * 229.11040 * 22 21 19 24 24 C 1.52996 * 138.58921 * 130.89756 * 22 21 19 25 25 C 1.47150 * 120.98336 * 26.24218 * 9 7 2 26 26 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.68273 * 110.83069 * 10 9 7 28 28 H 1.09007 * 109.68370 * 350.27656 * 10 9 7 29 29 H 1.08994 * 109.51398 * 187.77536 * 11 10 9 30 30 H 1.09002 * 109.51446 * 67.61724 * 11 10 9 31 31 H 1.08997 * 109.47388 * 179.97438 * 15 13 12 32 32 H 1.09000 * 109.47227 * 59.99013 * 15 13 12 33 33 H 0.97000 * 120.00074 * 0.02562 * 16 15 13 34 34 H 1.09004 * 117.49479 * 359.97438 * 21 19 17 35 35 H 1.09000 * 117.50171 * 214.97579 * 21 19 17 36 36 H 1.09000 * 117.49709 * 336.59306 * 23 22 21 37 37 H 1.09005 * 117.50333 * 121.61896 * 23 22 21 38 38 H 1.09005 * 117.49910 * 238.38221 * 24 22 21 39 39 H 1.08997 * 117.49942 * 23.39982 * 24 22 21 40 40 H 1.09005 * 109.67957 * 9.71960 * 25 9 7 41 41 H 1.09004 * 109.68312 * 249.17246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2223 0.2726 9 7 1.3700 -2.3626 -0.3440 10 6 1.8343 -3.6633 0.1637 11 6 1.9823 -4.6211 -1.0240 12 8 0.7662 -4.6302 -1.7756 13 6 0.4254 -3.3676 -2.3529 14 1 1.2385 -3.0296 -2.9954 15 6 -0.8534 -3.5124 -3.1803 16 7 -0.6366 -4.4936 -4.2464 17 6 -1.6329 -4.7861 -5.1057 18 8 -2.7086 -4.2367 -4.9968 19 6 -1.4101 -5.7959 -6.2020 20 1 -0.4057 -5.8173 -6.6247 21 6 -2.1634 -7.1239 -6.1031 22 6 -2.5797 -6.0841 -7.1453 23 6 -3.8561 -5.3965 -7.6337 24 6 -2.8892 -6.0201 -8.6422 25 6 0.1977 -2.3457 -1.2332 26 1 -0.4851 0.8400 0.0004 27 1 1.1060 -4.0632 0.8693 28 1 2.7976 -3.5415 0.6592 29 1 2.1914 -5.6260 -0.6575 30 1 2.8014 -4.2872 -1.6611 31 1 -1.1128 -2.5492 -3.6198 32 1 -1.6664 -3.8486 -2.5369 33 1 0.2236 -4.9333 -4.3334 34 1 -2.8199 -7.2674 -5.2448 35 1 -1.6546 -8.0191 -6.4606 36 1 -4.8021 -5.9094 -7.4601 37 1 -3.8941 -4.3084 -7.5794 38 1 -2.2909 -5.3424 -9.2514 39 1 -3.1990 -6.9432 -9.1320 40 1 0.0770 -1.3511 -1.6627 41 1 -0.6955 -2.6129 -0.6683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035531883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:32 Heat of formation + Delta-G solvation = 2.634420 kcal Electronic energy + Delta-G solvation = -21905.375598 eV Core-core repulsion = 18595.134104 eV Total energy + Delta-G solvation = -3310.241494 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.92509 -38.59040 -37.45298 -34.75007 -34.28055 -32.78360 -31.36042 -30.83489 -27.48403 -25.91445 -23.71177 -23.22780 -22.53373 -21.60840 -20.52845 -19.74594 -19.07350 -17.12014 -16.92767 -16.03879 -15.73567 -15.32118 -15.15918 -14.85074 -14.43344 -14.32515 -14.25439 -13.86716 -13.26864 -13.01254 -12.82440 -12.54308 -12.28631 -11.78028 -11.61370 -11.53041 -11.12772 -10.87943 -10.73875 -10.43741 -10.36035 -10.26902 -10.25772 -10.15027 -10.04615 -9.70572 -9.60236 -9.08944 -8.81767 -8.57776 -6.78522 -5.87055 -3.30932 2.59537 3.13067 3.32420 3.40259 3.42271 3.59893 3.74673 4.15109 4.24490 4.41736 4.63931 4.70510 5.02521 5.17928 5.29032 5.33452 5.40955 5.44459 5.49062 5.51723 5.54784 5.62079 5.79752 5.80422 5.84483 5.91503 6.01896 6.03647 6.10463 6.23596 6.36013 6.48663 6.68528 6.75887 7.04388 7.45418 7.68495 7.71676 7.81958 8.30264 8.41422 9.08041 9.71098 10.28014 11.21029 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.003560 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.994855 B = 7864.224412 C = 8570.354280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.536 3.464 18 O -0.539 6.539 19 C -0.139 4.139 20 H 0.122 0.878 21 C -0.100 4.100 22 C -0.202 4.202 23 C -0.113 4.113 24 C -0.131 4.131 25 C 0.152 3.848 26 H 0.256 0.744 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 -13.224 -13.326 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.319 5.319 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.309 6.309 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.321 3.679 18 O -0.416 6.416 19 C -0.161 4.161 20 H 0.140 0.860 21 C -0.137 4.137 22 C -0.203 4.203 23 C -0.150 4.150 24 C -0.168 4.168 25 C 0.026 3.974 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.078 -12.802 -13.214 18.516 hybrid contribution 1.158 0.943 0.188 1.505 sum -0.920 -11.859 -13.026 17.640 Atomic orbital electron populations 1.70028 1.05253 1.25685 1.53551 1.25067 0.95366 0.98536 1.00682 0.86191 0.79278 0.83702 0.77403 1.20226 1.21421 1.21589 1.19227 0.92662 0.84452 1.42228 0.91297 1.44062 1.33748 1.01398 1.52660 1.21606 0.98614 0.87559 0.93984 1.23005 0.86183 0.99603 0.94001 1.87777 1.42174 1.31567 1.69430 1.23145 0.95008 0.86448 0.95804 0.92647 1.21413 0.97675 0.92306 0.87676 1.45915 1.15665 1.43924 1.31181 1.19640 0.84059 0.82285 0.81868 1.90692 1.25249 1.52498 1.73185 1.21974 0.97419 0.98378 0.98287 0.85978 1.22650 1.00788 0.91128 0.99178 1.21141 0.99506 1.04587 0.95018 1.22591 0.92257 1.00316 0.99845 1.22758 1.02377 1.02581 0.89107 1.21309 0.89473 0.97620 0.89018 0.93432 0.95546 0.91968 0.90004 0.93871 0.90070 0.90810 0.76361 0.88030 0.87684 0.88593 0.88145 0.88604 0.88451 0.88588 0.95060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 11.14 55.49 0.62 -25.24 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.40 16 9 N -0.59 -14.81 3.05 -171.82 -0.52 -15.33 16 10 C 0.11 2.25 6.73 -3.53 -0.02 2.22 16 11 C 0.05 0.87 6.99 37.31 0.26 1.13 16 12 O -0.39 -7.20 10.13 -35.23 -0.36 -7.56 16 13 C 0.06 1.05 2.87 -26.58 -0.08 0.97 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 15 C 0.13 2.30 5.37 -4.04 -0.02 2.28 16 16 N -0.72 -10.46 5.45 -60.29 -0.33 -10.79 16 17 C 0.54 8.10 7.61 -10.99 -0.08 8.02 16 18 O -0.54 -10.15 16.24 5.56 0.09 -10.06 16 19 C -0.14 -1.59 6.19 -91.77 -0.57 -2.16 16 20 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.10 -0.99 10.23 -26.74 -0.27 -1.27 16 22 C -0.20 -2.23 5.05 -154.52 -0.78 -3.01 16 23 C -0.11 -1.22 10.16 -26.73 -0.27 -1.49 16 24 C -0.13 -1.15 10.53 -26.73 -0.28 -1.43 16 25 C 0.15 3.60 4.73 -3.53 -0.02 3.58 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.21 7.96 -51.92 -0.41 0.80 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.40 5.03 8.35 -40.82 -0.34 4.69 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 2.49 6.14 -51.93 -0.32 2.18 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -31.77 340.62 -9.31 -41.07 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.54 Total: 4.70 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.37 Total: 1.76 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.23 Total: -51.36 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.27 Total: -17.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.77 -9.31 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035531883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.706 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds