Wall clock time and date at job start Tue Mar 31 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47396 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47249 * 299.99918 * 3 2 1 6 6 H 1.48504 * 109.47442 * 59.99964 * 3 2 1 7 7 C 1.38806 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00312 * 196.91226 * 7 2 1 9 9 N 1.36939 * 120.00202 * 16.91534 * 7 2 1 10 10 C 1.47153 * 120.98189 * 206.22374 * 9 7 2 11 11 C 1.53293 * 108.38481 * 230.55597 * 10 9 7 12 12 O 1.42963 * 109.21969 * 307.69670 * 11 10 9 13 13 C 1.42962 * 114.16795 * 62.58369 * 12 11 10 14 14 H 1.08996 * 109.51520 * 57.38776 * 13 12 11 15 15 C 1.52998 * 109.51682 * 177.49592 * 13 12 11 16 16 N 1.46507 * 109.46737 * 299.99593 * 15 13 12 17 17 C 1.34776 * 119.99710 * 179.97438 * 16 15 13 18 18 O 1.21274 * 120.00321 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99643 * 180.02562 * 17 16 15 20 20 H 1.08993 * 115.56292 * 325.69894 * 19 17 16 21 21 C 1.53002 * 117.50255 * 111.39501 * 19 17 16 22 22 C 1.52989 * 59.99963 * 107.48671 * 21 19 17 23 23 C 1.52994 * 138.58768 * 229.11040 * 22 21 19 24 24 C 1.52996 * 138.58921 * 130.89756 * 22 21 19 25 25 C 1.47150 * 120.98336 * 26.24218 * 9 7 2 26 26 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.68273 * 110.83069 * 10 9 7 28 28 H 1.09007 * 109.68370 * 350.27656 * 10 9 7 29 29 H 1.08994 * 109.51398 * 187.77536 * 11 10 9 30 30 H 1.09002 * 109.51446 * 67.61724 * 11 10 9 31 31 H 1.08997 * 109.47388 * 179.97438 * 15 13 12 32 32 H 1.09000 * 109.47227 * 59.99013 * 15 13 12 33 33 H 0.97000 * 120.00074 * 0.02562 * 16 15 13 34 34 H 1.09004 * 117.49479 * 359.97438 * 21 19 17 35 35 H 1.09000 * 117.50171 * 214.97579 * 21 19 17 36 36 H 1.09000 * 117.49709 * 336.59306 * 23 22 21 37 37 H 1.09005 * 117.50333 * 121.61896 * 23 22 21 38 38 H 1.09005 * 117.49910 * 238.38221 * 24 22 21 39 39 H 1.08997 * 117.49942 * 23.39982 * 24 22 21 40 40 H 1.09005 * 109.67957 * 9.71960 * 25 9 7 41 41 H 1.09004 * 109.68312 * 249.17246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0553 -1.2223 0.2726 9 7 1.3700 -2.3626 -0.3440 10 6 1.8343 -3.6633 0.1637 11 6 1.9823 -4.6211 -1.0240 12 8 0.7662 -4.6302 -1.7756 13 6 0.4254 -3.3676 -2.3529 14 1 1.2385 -3.0296 -2.9954 15 6 -0.8534 -3.5124 -3.1803 16 7 -0.6366 -4.4936 -4.2464 17 6 -1.6329 -4.7861 -5.1057 18 8 -2.7086 -4.2367 -4.9968 19 6 -1.4101 -5.7959 -6.2020 20 1 -0.4057 -5.8173 -6.6247 21 6 -2.1634 -7.1239 -6.1031 22 6 -2.5797 -6.0841 -7.1453 23 6 -3.8561 -5.3965 -7.6337 24 6 -2.8892 -6.0201 -8.6422 25 6 0.1977 -2.3457 -1.2332 26 1 -0.4851 0.8400 0.0004 27 1 1.1060 -4.0632 0.8693 28 1 2.7976 -3.5415 0.6592 29 1 2.1914 -5.6260 -0.6575 30 1 2.8014 -4.2872 -1.6611 31 1 -1.1128 -2.5492 -3.6198 32 1 -1.6664 -3.8486 -2.5369 33 1 0.2236 -4.9333 -4.3334 34 1 -2.8199 -7.2674 -5.2448 35 1 -1.6546 -8.0191 -6.4606 36 1 -4.8021 -5.9094 -7.4601 37 1 -3.8941 -4.3084 -7.5794 38 1 -2.2909 -5.3424 -9.2514 39 1 -3.1990 -6.9432 -9.1320 40 1 0.0770 -1.3511 -1.6627 41 1 -0.6955 -2.6129 -0.6683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035531883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:32 Heat of formation + Delta-G solvation = -18.470418 kcal Electronic energy + Delta-G solvation = -21906.290772 eV Core-core repulsion = 18595.134104 eV Total energy + Delta-G solvation = -3311.156669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10031 -40.10482 -38.43615 -36.45930 -35.79905 -33.65301 -33.25986 -32.37968 -29.15805 -27.57938 -25.22933 -24.68800 -23.26750 -23.11126 -21.76521 -21.22951 -20.08345 -18.92517 -18.15656 -17.52641 -17.11725 -16.92730 -16.18548 -16.03448 -15.85545 -15.60975 -15.51222 -15.42499 -15.04002 -14.60172 -14.52851 -13.81460 -13.47487 -13.19401 -13.03115 -12.71846 -12.62913 -12.52259 -12.34767 -12.20054 -12.07794 -11.89883 -11.33761 -11.18195 -11.08154 -10.94318 -10.86983 -10.70921 -10.57119 -10.13739 -8.77931 -7.93277 -5.41039 1.44575 1.46604 1.47551 1.57242 2.01559 2.46140 2.73831 2.77774 2.88880 3.21956 3.35110 3.48160 3.79723 3.86141 4.02315 4.04440 4.13408 4.25033 4.43435 4.49535 4.50932 4.58220 4.62494 4.67606 4.76273 4.78498 4.81796 4.83135 4.95755 5.02986 5.05341 5.05623 5.20949 5.28478 5.36891 5.49980 5.58250 6.24363 6.30613 6.56255 7.03132 7.24153 7.72228 8.25847 9.12744 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.003560 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.994855 B = 7864.224412 C = 8570.354280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.615 5.615 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.066 0.934 15 C 0.144 3.856 16 N -0.705 5.705 17 C 0.531 3.469 18 O -0.584 6.584 19 C -0.145 4.145 20 H 0.152 0.848 21 C -0.085 4.085 22 C -0.226 4.226 23 C -0.137 4.137 24 C -0.102 4.102 25 C 0.159 3.841 26 H 0.251 0.749 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.066 0.934 41 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -15.272 -15.004 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.019 3.981 14 H 0.084 0.916 15 C 0.019 3.981 16 N -0.357 5.357 17 C 0.319 3.681 18 O -0.464 6.464 19 C -0.166 4.166 20 H 0.170 0.830 21 C -0.122 4.122 22 C -0.227 4.227 23 C -0.174 4.174 24 C -0.138 4.138 25 C 0.032 3.968 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 0.013 -14.901 -14.898 21.071 hybrid contribution 0.501 1.544 0.791 1.806 sum 0.514 -13.357 -14.107 19.434 Atomic orbital electron populations 1.70194 1.06807 1.26025 1.55194 1.25870 0.96091 1.01779 1.01036 0.85153 0.78718 0.79471 0.76769 1.18658 1.21620 1.22029 1.19597 0.93088 0.85490 1.41300 0.90700 1.44371 1.33694 1.02503 1.53383 1.21845 0.98568 0.86454 0.95576 1.23095 0.85804 1.00744 0.92404 1.87792 1.43085 1.30575 1.69400 1.22728 0.95800 0.85478 0.94138 0.91648 1.21063 0.96262 0.92688 0.88090 1.45753 1.16452 1.43226 1.30236 1.20396 0.83146 0.82305 0.82246 1.90675 1.27068 1.54294 1.74407 1.22004 0.99187 0.98095 0.97272 0.83017 1.22759 0.99813 0.91441 0.98201 1.21436 0.99224 1.05124 0.96896 1.22605 0.93114 0.99270 1.02428 1.22858 1.00089 1.03100 0.87761 1.21083 0.88262 0.97525 0.89895 0.93974 0.96732 0.90827 0.85963 0.92637 0.91022 0.92694 0.74708 0.89421 0.84341 0.88108 0.90376 0.87763 0.86078 0.91549 0.98363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.66 11.14 21.65 0.24 -55.42 16 2 C -0.05 -2.91 4.95 84.86 0.42 -2.49 16 3 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.27 -14.37 9.65 84.03 0.81 -13.56 16 8 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 9 N -0.61 -30.85 3.05 -697.52 -2.13 -32.97 16 10 C 0.10 4.06 6.73 86.35 0.58 4.64 16 11 C 0.06 1.79 6.99 72.08 0.50 2.30 16 12 O -0.39 -13.64 10.13 -148.98 -1.51 -15.15 16 13 C 0.08 2.94 2.87 30.69 0.09 3.03 16 14 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 15 C 0.14 5.08 5.37 86.38 0.46 5.54 16 16 N -0.71 -19.98 5.45 -463.06 -2.52 -22.50 16 17 C 0.53 15.82 7.61 87.66 0.67 16.48 16 18 O -0.58 -22.65 16.24 -3.01 -0.05 -22.70 16 19 C -0.14 -2.98 6.19 -11.54 -0.07 -3.05 16 20 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 21 C -0.09 -1.46 10.23 30.59 0.31 -1.15 16 22 C -0.23 -4.55 5.05 -52.19 -0.26 -4.82 16 23 C -0.14 -2.91 10.16 30.59 0.31 -2.59 16 24 C -0.10 -1.50 10.53 30.59 0.32 -1.18 16 25 C 0.16 7.77 4.73 86.35 0.41 8.18 16 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 2.75 7.96 -2.38 -0.02 2.74 16 29 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.42 9.44 8.35 -92.71 -0.77 8.66 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.14 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 3.62 6.14 -2.38 -0.01 3.61 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -71.17 340.62 0.86 -70.31 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.25 Total: 20.70 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 4.55 Total: 11.33 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.41 Total: -110.89 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.56 Total: -37.85 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.17 0.86 -70.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035531883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.838 kcal (2) G-P(sol) polarization free energy of solvation -71.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds