Wall clock time and date at job start Tue Mar 31 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47073 * 239.99728 * 3 2 1 5 5 H 1.48504 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47233 * 119.99561 * 3 2 1 7 7 C 1.38819 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99752 * 189.40739 * 7 2 1 9 9 N 1.36942 * 119.99695 * 9.41359 * 7 2 1 10 10 C 1.47163 * 120.99120 * 31.45273 * 9 7 2 11 11 C 1.53296 * 108.41260 * 129.50947 * 10 9 7 12 12 O 1.42963 * 109.22410 * 52.27919 * 11 10 9 13 13 C 1.42962 * 114.16317 * 297.41927 * 12 11 10 14 14 C 1.47144 * 120.97770 * 211.43008 * 9 7 2 15 15 H 1.09000 * 109.68262 * 110.75300 * 14 9 7 16 16 C 1.53001 * 109.68553 * 350.23308 * 14 9 7 17 17 N 1.46502 * 109.46880 * 60.87643 * 16 14 9 18 18 C 1.34770 * 120.00041 * 180.02562 * 17 16 14 19 19 O 1.21618 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.47107 * 120.00054 * 179.97438 * 18 17 16 21 21 C 1.32618 * 124.61946 * 180.02562 * 20 18 17 22 22 C 1.51107 * 110.75651 * 180.02562 * 21 20 18 23 23 C 1.54582 * 104.84052 * 16.60172 * 22 21 20 24 24 C 1.51106 * 124.62074 * 359.72961 * 20 18 17 25 25 H 0.96998 * 120.00306 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.68668 * 9.76874 * 10 9 7 27 27 H 1.08996 * 109.64966 * 249.23137 * 10 9 7 28 28 H 1.09008 * 109.50827 * 292.35433 * 11 10 9 29 29 H 1.08998 * 109.51676 * 172.20692 * 11 10 9 30 30 H 1.09000 * 109.51779 * 302.65869 * 13 12 11 31 31 H 1.09001 * 109.55240 * 182.52853 * 13 12 11 32 32 H 1.08999 * 109.47002 * 180.87360 * 16 14 9 33 33 H 1.09001 * 109.47327 * 300.87987 * 16 14 9 34 34 H 0.97003 * 119.99759 * 0.02562 * 17 16 14 35 35 H 1.08000 * 124.62080 * 0.02562 * 21 20 18 36 36 H 1.09002 * 110.36649 * 135.43990 * 22 21 20 37 37 H 1.08998 * 110.36911 * 257.75849 * 22 21 20 38 38 H 1.08993 * 110.98581 * 93.07329 * 23 22 21 39 39 H 1.09007 * 110.97838 * 216.83667 * 23 22 21 40 40 H 1.09003 * 110.36500 * 282.23576 * 24 20 18 41 41 H 1.09000 * 110.37127 * 44.54980 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0794 -1.2083 0.1534 9 7 1.3394 -2.3802 -0.1929 10 6 0.1357 -2.4368 -1.0376 11 6 0.3047 -3.5795 -2.0454 12 8 0.6458 -4.7783 -1.3451 13 6 1.8890 -4.7118 -0.6423 14 6 1.8011 -3.6271 0.4374 15 1 1.0936 -3.9328 1.2081 16 6 3.1807 -3.4087 1.0619 17 7 3.0922 -2.3689 2.0901 18 6 4.1928 -2.0064 2.7784 19 8 5.2593 -2.5428 2.5463 20 6 4.1040 -0.9619 3.8104 21 6 5.1258 -0.5350 4.5402 22 6 4.6831 0.5421 5.5031 23 6 3.1429 0.4205 5.5523 24 6 2.8376 -0.2246 4.1790 25 1 -0.4850 0.8400 -0.0004 26 1 0.0156 -1.4930 -1.5695 27 1 -0.7401 -2.6223 -0.4158 28 1 1.0993 -3.3301 -2.7488 29 1 -0.6291 -3.7279 -2.5877 30 1 2.6893 -4.4665 -1.3405 31 1 2.0959 -5.6746 -0.1751 32 1 3.5261 -4.3384 1.5141 33 1 3.8840 -3.0971 0.2896 34 1 2.2415 -1.9413 2.2754 35 1 6.1365 -0.9066 4.4575 36 1 5.1092 0.3663 6.4909 37 1 4.9744 1.5250 5.1329 38 1 2.8284 -0.2265 6.3711 39 1 2.6763 1.4024 5.6320 40 1 2.6154 0.5423 3.4369 41 1 2.0043 -0.9219 4.2662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050870976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:33 Heat of formation + Delta-G solvation = -41.615790 kcal Electronic energy + Delta-G solvation = -23160.920856 eV Core-core repulsion = 19848.760529 eV Total energy + Delta-G solvation = -3312.160327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.59620 -38.49595 -37.34098 -35.29373 -33.56949 -31.60491 -30.48340 -29.18382 -28.19949 -27.18102 -25.39293 -23.46129 -22.11399 -21.34278 -20.38469 -19.70905 -18.32403 -17.01095 -16.39220 -15.96076 -15.71147 -15.40805 -14.88982 -14.61632 -14.31243 -14.08080 -13.68031 -13.64283 -13.03562 -12.71692 -12.61845 -12.40726 -11.96221 -11.72892 -11.57676 -11.47052 -11.18131 -10.99667 -10.98358 -10.87283 -10.74786 -10.42358 -10.27095 -10.06288 -9.68302 -9.45089 -8.97967 -8.76355 -8.64584 -8.22113 -6.73741 -5.91968 -3.42260 1.72277 3.26958 3.33540 3.36747 3.75937 3.90398 4.33023 4.52768 4.68606 4.78340 5.09596 5.13818 5.25404 5.32655 5.45137 5.59777 5.70117 5.74030 5.84348 5.85953 5.92577 5.99521 6.01660 6.06234 6.13818 6.15267 6.23673 6.32849 6.34350 6.51286 6.59200 6.75451 6.79312 7.06962 7.12556 7.48577 7.69037 7.86136 8.24977 8.29223 8.85069 9.04697 9.64462 10.23816 11.14357 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.006905 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.304643 B = 4053.868502 C = 5164.935900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.011 3.989 3 Si 0.894 3.106 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.135 3.865 17 N -0.687 5.687 18 C 0.556 3.444 19 O -0.567 6.567 20 C -0.172 4.172 21 C -0.097 4.097 22 C -0.103 4.103 23 C -0.122 4.122 24 C -0.094 4.094 25 H 0.256 0.744 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -1.617 6.572 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.723 3.277 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.010 3.990 17 N -0.338 5.338 18 C 0.344 3.656 19 O -0.449 6.449 20 C -0.175 4.175 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.131 4.131 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.254 0.746 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.718 -2.005 6.388 7.658 hybrid contribution 0.152 1.451 -0.110 1.463 sum 3.870 -0.554 6.278 7.396 Atomic orbital electron populations 1.69956 1.05131 1.25744 1.53559 1.25130 0.95286 0.98089 1.00313 0.86505 0.79008 0.83531 0.78608 1.20975 1.21517 1.20391 1.19190 0.91072 0.83159 1.44994 0.91007 1.44077 1.30689 1.03330 1.53566 1.21430 0.88649 0.96635 0.91446 1.23361 0.99054 0.86801 0.95130 1.87799 1.39204 1.36755 1.67367 1.22860 0.86429 0.98620 0.94378 1.21433 0.93575 0.89385 0.93855 0.94126 1.21177 0.97481 0.89932 0.90373 1.45929 1.12072 1.39317 1.36436 1.17942 0.84011 0.82300 0.81335 1.90717 1.28770 1.56599 1.68818 1.21935 0.97670 0.99013 0.98859 1.23889 0.98552 0.94653 0.94630 1.21424 0.96040 0.97976 0.98556 1.22456 0.95171 1.01107 0.97259 1.21319 0.95473 0.99325 0.96978 0.93397 0.88847 0.95283 0.94136 0.90244 0.93503 0.89901 0.92284 0.91467 0.74553 0.84822 0.90736 0.90116 0.91030 0.90796 0.89593 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.87 11.08 55.49 0.61 -23.26 16 2 C 0.01 0.29 5.09 -17.43 -0.09 0.20 16 3 Si 0.89 20.60 29.56 -169.99 -5.03 15.57 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.25 -6.28 7.07 -15.05 -0.11 -6.39 16 8 H 0.07 1.83 5.82 -52.49 -0.31 1.52 16 9 N -0.59 -13.56 3.03 -164.29 -0.50 -14.06 16 10 C 0.14 3.25 5.37 -3.53 -0.02 3.23 16 11 C 0.03 0.66 6.99 37.31 0.26 0.92 16 12 O -0.39 -7.65 10.74 -35.23 -0.38 -8.03 16 13 C 0.06 1.00 6.29 37.31 0.23 1.23 16 14 C 0.12 2.45 3.20 -67.42 -0.22 2.23 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.13 2.55 4.44 -4.04 -0.02 2.54 16 17 N -0.69 -13.41 3.78 -61.49 -0.23 -13.64 16 18 C 0.56 11.01 7.79 -12.67 -0.10 10.91 16 19 O -0.57 -12.59 16.77 5.26 0.09 -12.50 16 20 C -0.17 -2.91 6.09 -102.73 -0.63 -3.54 16 21 C -0.10 -1.42 10.43 -36.01 -0.38 -1.80 16 22 C -0.10 -1.19 6.80 -26.85 -0.18 -1.37 16 23 C -0.12 -1.45 7.17 -24.97 -0.18 -1.63 16 24 C -0.09 -1.43 6.04 -26.75 -0.16 -1.59 16 25 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.09 2.32 6.31 -51.93 -0.33 1.99 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.38 7.55 -51.93 -0.39 0.99 16 34 H 0.42 8.39 6.34 -40.82 -0.26 8.14 16 35 H 0.13 1.91 8.03 -52.49 -0.42 1.48 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -28.69 326.94 -8.40 -37.09 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.32 Total: 8.95 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.58 Total: 4.96 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.12 Total: -50.96 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.29 Total: -20.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.69 -8.40 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050870976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.526 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds