Wall clock time and date at job start Tue Mar 31 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47073 * 239.99728 * 3 2 1 5 5 H 1.48504 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47233 * 119.99561 * 3 2 1 7 7 C 1.38819 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99752 * 189.40739 * 7 2 1 9 9 N 1.36942 * 119.99695 * 9.41359 * 7 2 1 10 10 C 1.47163 * 120.99120 * 31.45273 * 9 7 2 11 11 C 1.53296 * 108.41260 * 129.50947 * 10 9 7 12 12 O 1.42963 * 109.22410 * 52.27919 * 11 10 9 13 13 C 1.42962 * 114.16317 * 297.41927 * 12 11 10 14 14 C 1.47144 * 120.97770 * 211.43008 * 9 7 2 15 15 H 1.09000 * 109.68262 * 110.75300 * 14 9 7 16 16 C 1.53001 * 109.68553 * 350.23308 * 14 9 7 17 17 N 1.46502 * 109.46880 * 60.87643 * 16 14 9 18 18 C 1.34770 * 120.00041 * 180.02562 * 17 16 14 19 19 O 1.21618 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.47107 * 120.00054 * 179.97438 * 18 17 16 21 21 C 1.32618 * 124.61946 * 180.02562 * 20 18 17 22 22 C 1.51107 * 110.75651 * 180.02562 * 21 20 18 23 23 C 1.54582 * 104.84052 * 16.60172 * 22 21 20 24 24 C 1.51106 * 124.62074 * 359.72961 * 20 18 17 25 25 H 0.96998 * 120.00306 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.68668 * 9.76874 * 10 9 7 27 27 H 1.08996 * 109.64966 * 249.23137 * 10 9 7 28 28 H 1.09008 * 109.50827 * 292.35433 * 11 10 9 29 29 H 1.08998 * 109.51676 * 172.20692 * 11 10 9 30 30 H 1.09000 * 109.51779 * 302.65869 * 13 12 11 31 31 H 1.09001 * 109.55240 * 182.52853 * 13 12 11 32 32 H 1.08999 * 109.47002 * 180.87360 * 16 14 9 33 33 H 1.09001 * 109.47327 * 300.87987 * 16 14 9 34 34 H 0.97003 * 119.99759 * 0.02562 * 17 16 14 35 35 H 1.08000 * 124.62080 * 0.02562 * 21 20 18 36 36 H 1.09002 * 110.36649 * 135.43990 * 22 21 20 37 37 H 1.08998 * 110.36911 * 257.75849 * 22 21 20 38 38 H 1.08993 * 110.98581 * 93.07329 * 23 22 21 39 39 H 1.09007 * 110.97838 * 216.83667 * 23 22 21 40 40 H 1.09003 * 110.36500 * 282.23576 * 24 20 18 41 41 H 1.09000 * 110.37127 * 44.54980 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0794 -1.2083 0.1534 9 7 1.3394 -2.3802 -0.1929 10 6 0.1357 -2.4368 -1.0376 11 6 0.3047 -3.5795 -2.0454 12 8 0.6458 -4.7783 -1.3451 13 6 1.8890 -4.7118 -0.6423 14 6 1.8011 -3.6271 0.4374 15 1 1.0936 -3.9328 1.2081 16 6 3.1807 -3.4087 1.0619 17 7 3.0922 -2.3689 2.0901 18 6 4.1928 -2.0064 2.7784 19 8 5.2593 -2.5428 2.5463 20 6 4.1040 -0.9619 3.8104 21 6 5.1258 -0.5350 4.5402 22 6 4.6831 0.5421 5.5031 23 6 3.1429 0.4205 5.5523 24 6 2.8376 -0.2246 4.1790 25 1 -0.4850 0.8400 -0.0004 26 1 0.0156 -1.4930 -1.5695 27 1 -0.7401 -2.6223 -0.4158 28 1 1.0993 -3.3301 -2.7488 29 1 -0.6291 -3.7279 -2.5877 30 1 2.6893 -4.4665 -1.3405 31 1 2.0959 -5.6746 -0.1751 32 1 3.5261 -4.3384 1.5141 33 1 3.8840 -3.0971 0.2896 34 1 2.2415 -1.9413 2.2754 35 1 6.1365 -0.9066 4.4575 36 1 5.1092 0.3663 6.4909 37 1 4.9744 1.5250 5.1329 38 1 2.8284 -0.2265 6.3711 39 1 2.6763 1.4024 5.6320 40 1 2.6154 0.5423 3.4369 41 1 2.0043 -0.9219 4.2662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050870976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:32 Heat of formation + Delta-G solvation = -59.473085 kcal Electronic energy + Delta-G solvation = -23161.695207 eV Core-core repulsion = 19848.760529 eV Total energy + Delta-G solvation = -3312.934678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06910 -40.03586 -38.61595 -36.94028 -35.31792 -33.32116 -32.19642 -30.35806 -29.36791 -28.92274 -26.90526 -25.24650 -23.67252 -22.73499 -21.51585 -21.41310 -19.80078 -18.53994 -17.92316 -17.61832 -17.30075 -16.62349 -16.37937 -16.23534 -16.03931 -15.59322 -15.27434 -15.22635 -14.76835 -14.36995 -13.75516 -13.66733 -13.56660 -13.15267 -12.93406 -12.84461 -12.73979 -12.57982 -12.51239 -12.17122 -12.06507 -12.03703 -11.97700 -11.86896 -11.32799 -11.01040 -10.63976 -10.57197 -10.05198 -9.72638 -8.61853 -7.87382 -5.39007 0.42996 1.40438 1.44220 1.48849 2.27523 2.42121 2.47465 3.02566 3.28722 3.42810 3.57935 3.66846 4.01092 4.10787 4.18473 4.21626 4.31036 4.33739 4.46767 4.56925 4.62177 4.65033 4.70650 4.78845 4.81295 4.88094 4.96427 4.99727 5.10097 5.14640 5.29259 5.33634 5.39932 5.55882 5.58095 5.63997 5.67881 6.28646 6.36991 6.69182 7.10772 7.29563 7.75562 8.31899 9.16648 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.006905 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.304643 B = 4053.868502 C = 5164.935900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.604 5.604 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.140 3.860 17 N -0.690 5.690 18 C 0.552 3.448 19 O -0.599 6.599 20 C -0.213 4.213 21 C -0.071 4.071 22 C -0.100 4.100 23 C -0.115 4.115 24 C -0.092 4.092 25 H 0.251 0.749 26 H 0.067 0.933 27 H 0.007 0.993 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.412 0.588 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -1.804 7.809 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.224 4.224 3 Si 0.769 3.231 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.081 0.919 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.315 6.315 13 C -0.020 4.020 14 C 0.019 3.981 15 H 0.055 0.945 16 C 0.016 3.984 17 N -0.339 5.339 18 C 0.341 3.659 19 O -0.484 6.484 20 C -0.216 4.216 21 C -0.091 4.091 22 C -0.136 4.136 23 C -0.153 4.153 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.249 0.751 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.587 -2.209 7.628 9.170 hybrid contribution -0.051 1.465 -0.460 1.537 sum 4.536 -0.744 7.167 8.515 Atomic orbital electron populations 1.70072 1.06002 1.25696 1.55183 1.25572 0.95752 1.00089 1.00985 0.85779 0.77945 0.81123 0.78252 1.21728 1.21763 1.19785 1.19178 0.90679 0.83972 1.43523 0.91900 1.44266 1.30562 1.04001 1.54218 1.21261 0.87864 0.96894 0.91632 1.23230 1.00483 0.85459 0.94036 1.87803 1.39950 1.36379 1.67413 1.22975 0.85882 0.99486 0.93681 1.21554 0.93553 0.88579 0.94374 0.94546 1.21145 0.96579 0.90692 0.90005 1.45963 1.11937 1.39432 1.36532 1.18437 0.83356 0.82498 0.81569 1.90681 1.29608 1.58001 1.70062 1.21931 0.99493 1.00196 0.99997 1.24319 0.97974 0.93606 0.93198 1.21531 0.95717 0.97155 0.99207 1.22486 0.95586 1.01838 0.95350 1.21273 0.94673 0.98486 0.98476 0.93984 0.91431 0.97469 0.93900 0.87680 0.93300 0.86383 0.90180 0.93231 0.75087 0.84593 0.87566 0.88834 0.89431 0.89368 0.92187 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 11.08 21.65 0.24 -49.97 16 2 C -0.03 -1.40 5.09 84.86 0.43 -0.97 16 3 Si 0.94 42.98 29.56 68.60 2.03 45.01 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.24 -12.21 7.07 84.03 0.59 -11.61 16 8 H 0.06 3.26 5.82 -2.91 -0.02 3.25 16 9 N -0.60 -27.98 3.03 -673.71 -2.04 -30.03 16 10 C 0.15 6.81 5.37 86.35 0.46 7.28 16 11 C 0.05 1.71 6.99 72.08 0.50 2.21 16 12 O -0.40 -14.69 10.74 -148.98 -1.60 -16.29 16 13 C 0.06 1.96 6.29 72.08 0.45 2.41 16 14 C 0.13 4.88 3.20 44.97 0.14 5.02 16 15 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 16 C 0.14 5.28 4.44 86.38 0.38 5.66 16 17 N -0.69 -27.27 3.78 -466.70 -1.76 -29.03 16 18 C 0.55 21.99 7.79 86.57 0.67 22.67 16 19 O -0.60 -26.73 16.77 -4.09 -0.07 -26.80 16 20 C -0.21 -7.11 6.09 -18.57 -0.11 -7.22 16 21 C -0.07 -1.94 10.43 24.65 0.26 -1.68 16 22 C -0.10 -1.94 6.80 30.52 0.21 -1.73 16 23 C -0.12 -2.41 7.17 31.74 0.23 -2.19 16 24 C -0.09 -2.75 6.04 30.58 0.18 -2.56 16 25 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 26 H 0.07 3.44 6.31 -2.39 -0.02 3.42 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.05 2.04 7.55 -2.39 -0.02 2.03 16 34 H 0.41 17.03 6.34 -92.71 -0.59 16.44 16 35 H 0.14 3.62 8.03 -2.91 -0.02 3.59 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.06 7.82 -2.39 -0.02 2.04 16 Total: -1.00 -62.39 326.94 1.64 -60.75 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.44 Total: 29.06 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 4.41 Total: 17.29 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.57 Total: -109.02 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.67 Total: -43.08 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.39 1.64 -60.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050870976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.275 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds