Wall clock time and date at job start Tue Mar 31 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48509 * 109.47126 * 275.45342 * 3 2 1 5 5 H 1.48495 * 109.47359 * 35.45632 * 3 2 1 6 6 H 1.48499 * 109.47123 * 155.45871 * 3 2 1 7 7 C 1.38814 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99782 * 28.79297 * 7 2 1 9 9 N 1.36934 * 120.00045 * 208.79500 * 7 2 1 10 10 C 1.47159 * 120.97970 * 44.88005 * 9 7 2 11 11 C 1.53302 * 108.38055 * 129.48455 * 10 9 7 12 12 O 1.42963 * 109.22241 * 52.30633 * 11 10 9 13 13 C 1.42969 * 114.16280 * 297.41573 * 12 11 10 14 14 C 1.47146 * 120.98517 * 224.89942 * 9 7 2 15 15 H 1.09003 * 109.70846 * 110.77321 * 14 9 7 16 16 C 1.52997 * 109.68117 * 350.24346 * 14 9 7 17 17 N 1.46501 * 109.47530 * 60.77313 * 16 14 9 18 18 C 1.34777 * 120.00146 * 179.97438 * 17 16 14 19 19 O 1.21276 * 120.00140 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99758 * 180.02562 * 18 17 16 21 21 H 1.09004 * 115.56354 * 325.69954 * 20 18 17 22 22 C 1.53001 * 117.49821 * 111.39266 * 20 18 17 23 23 C 1.52995 * 117.49798 * 180.02562 * 20 18 17 24 24 C 1.52991 * 138.58633 * 23.40249 * 23 20 18 25 25 C 1.52996 * 138.58860 * 121.61593 * 23 20 18 26 26 H 0.97006 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.68369 * 9.76844 * 10 9 7 28 28 H 1.08990 * 109.71253 * 249.22227 * 10 9 7 29 29 H 1.09000 * 109.51523 * 292.37557 * 11 10 9 30 30 H 1.09000 * 109.54893 * 172.24737 * 11 10 9 31 31 H 1.08999 * 109.51051 * 302.65787 * 13 12 11 32 32 H 1.08997 * 109.55294 * 182.53259 * 13 12 11 33 33 H 1.09007 * 109.46828 * 300.77940 * 16 14 9 34 34 H 1.08997 * 109.47590 * 180.77670 * 16 14 9 35 35 H 0.97004 * 120.00032 * 0.02562 * 17 16 14 36 36 H 1.08996 * 117.49851 * 0.02562 * 22 20 18 37 37 H 1.08994 * 117.49573 * 214.97304 * 22 20 18 38 38 H 1.09002 * 117.49803 * 238.38145 * 24 23 20 39 39 H 1.08998 * 117.50270 * 23.40408 * 24 23 20 40 40 H 1.09004 * 117.49578 * 336.59728 * 25 23 20 41 41 H 1.08992 * 117.50037 * 121.59678 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3823 2.1130 -1.3938 5 1 1.5100 2.6167 0.8121 6 1 3.6006 1.4097 0.5815 7 6 2.0103 -1.2021 -0.0005 8 1 1.5705 -2.0794 -0.4514 9 7 3.2527 -1.2756 0.5706 10 6 3.5206 -0.6648 1.8824 11 6 4.1970 -1.7123 2.7743 12 8 5.3247 -2.2588 2.0862 13 6 4.9948 -2.9512 0.8796 14 6 4.3593 -1.9673 -0.1092 15 1 5.1037 -1.2399 -0.4331 16 6 3.8226 -2.7301 -1.3220 17 7 3.2101 -1.7865 -2.2606 18 6 2.6671 -2.2355 -3.4095 19 8 2.6850 -3.4207 -3.6662 20 6 2.0376 -1.2648 -4.3752 21 1 1.5352 -0.4099 -3.9224 22 6 2.7442 -1.0413 -5.7137 23 6 1.4379 -1.8365 -5.6614 24 6 0.8821 -3.1656 -6.1763 25 6 0.0878 -1.8739 -6.3801 26 1 -0.4851 0.8401 0.0004 27 1 2.5829 -0.3459 2.3373 28 1 4.1802 0.1942 1.7601 29 1 3.4885 -2.5086 3.0022 30 1 4.5282 -1.2433 3.7008 31 1 4.2892 -3.7520 1.1007 32 1 5.8995 -3.3735 0.4423 33 1 3.0756 -3.4535 -0.9948 34 1 4.6426 -3.2522 -1.8150 35 1 3.1960 -0.8385 -2.0554 36 1 3.6641 -1.5968 -5.8960 37 1 2.7067 -0.0396 -6.1415 38 1 1.3602 -3.6058 -7.0513 39 1 0.5086 -3.8749 -5.4377 40 1 -0.8083 -1.7334 -5.7755 41 1 0.0432 -1.4640 -7.3890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051135853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:35 Heat of formation + Delta-G solvation = 10.901556 kcal Electronic energy + Delta-G solvation = -22938.657137 eV Core-core repulsion = 19628.774133 eV Total energy + Delta-G solvation = -3309.883004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.55914 -38.68007 -37.14519 -35.31042 -33.49610 -32.44336 -31.74186 -30.87687 -27.56018 -25.91758 -23.41089 -23.27012 -22.21985 -21.84142 -20.05843 -19.87098 -18.71936 -17.00470 -16.36875 -15.96722 -15.74330 -15.14775 -15.03952 -14.83850 -14.42315 -14.32631 -14.09869 -13.87683 -13.56282 -13.05756 -12.68113 -12.24111 -12.07153 -11.84860 -11.65460 -11.40128 -11.27847 -10.92559 -10.82966 -10.76045 -10.35791 -10.01469 -9.94775 -9.86874 -9.78388 -9.64859 -9.38208 -9.06484 -8.57992 -8.23218 -6.78561 -6.20267 -3.63881 3.04807 3.21475 3.36247 3.40920 3.61020 3.98850 4.10685 4.33940 4.39399 4.53324 4.71667 5.01934 5.06543 5.10870 5.48641 5.51935 5.58862 5.64247 5.70489 5.75735 5.79156 5.82811 5.86740 5.89486 5.94999 5.96411 6.07227 6.09198 6.16695 6.21687 6.31141 6.35367 6.46584 6.64828 6.79854 7.17782 7.64012 7.86184 8.28393 8.29871 8.79131 8.93198 9.51287 10.00614 10.93615 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.006138 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.593856 B = 4560.319041 C = 5517.892310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.052 3.948 3 Si 0.838 3.162 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.253 1.253 7 C -0.274 4.274 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.107 3.893 11 C 0.043 3.957 12 O -0.390 6.390 13 C 0.056 3.944 14 C 0.120 3.880 15 H 0.043 0.957 16 C 0.141 3.859 17 N -0.688 5.688 18 C 0.540 3.460 19 O -0.559 6.559 20 C -0.133 4.133 21 H 0.125 0.875 22 C -0.106 4.106 23 C -0.199 4.199 24 C -0.113 4.113 25 C -0.133 4.133 26 H 0.265 0.735 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -1.207 -6.027 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.151 4.151 3 Si 0.664 3.336 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.402 4.402 8 H 0.096 0.904 9 N -0.326 5.326 10 C -0.019 4.019 11 C -0.035 4.035 12 O -0.308 6.308 13 C -0.023 4.023 14 C 0.014 3.986 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.338 5.338 18 C 0.326 3.674 19 O -0.438 6.438 20 C -0.154 4.154 21 H 0.143 0.857 22 C -0.143 4.143 23 C -0.200 4.200 24 C -0.150 4.150 25 C -0.170 4.170 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.922 -1.939 -6.113 8.729 hybrid contribution -0.058 1.681 0.194 1.693 sum 5.864 -0.258 -5.919 8.336 Atomic orbital electron populations 1.69983 1.06276 1.27029 1.48383 1.25674 0.94822 0.97571 0.97065 0.87447 0.82181 0.85688 0.78243 1.21275 1.21928 1.17769 1.18624 0.90097 0.94982 1.36486 0.90388 1.44338 1.07345 1.65128 1.15836 1.22035 0.99191 0.94163 0.86477 1.23123 0.88477 0.97048 0.94810 1.87817 1.32551 1.73298 1.37159 1.22872 0.99630 0.93963 0.85800 1.21577 0.91351 0.94107 0.91584 0.93947 1.21075 0.96737 0.92034 0.88537 1.45802 1.57717 1.12017 1.18270 1.19460 0.78022 0.88206 0.81693 1.90613 1.59402 1.16965 1.76863 1.21991 1.03417 1.01089 0.88931 0.85748 1.22631 0.94353 1.00288 0.97012 1.21091 0.95966 1.03071 0.99821 1.22538 1.00942 0.89845 1.01643 1.22739 0.92849 1.01244 1.00158 0.92528 0.90684 0.94657 0.93279 0.89948 0.93069 0.89593 0.91338 0.92405 0.75406 0.88364 0.88027 0.88933 0.88235 0.88511 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.97 55.49 0.78 -23.90 16 2 C 0.05 1.35 5.03 -17.43 -0.09 1.26 16 3 Si 0.84 19.39 27.28 -169.99 -4.64 14.76 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.25 -5.67 5.06 56.52 0.29 -5.38 16 7 C -0.27 -6.81 6.68 -15.06 -0.10 -6.91 16 8 H 0.08 2.20 6.81 -52.49 -0.36 1.84 16 9 N -0.60 -12.95 2.43 -164.31 -0.40 -13.35 16 10 C 0.11 2.16 4.75 -3.53 -0.02 2.14 16 11 C 0.04 0.76 6.98 37.31 0.26 1.02 16 12 O -0.39 -7.00 10.74 -35.23 -0.38 -7.38 16 13 C 0.06 0.93 6.29 37.31 0.23 1.17 16 14 C 0.12 2.23 3.21 -67.43 -0.22 2.01 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 16 C 0.14 2.61 4.48 -4.04 -0.02 2.59 16 17 N -0.69 -13.40 4.03 -60.29 -0.24 -13.64 16 18 C 0.54 10.69 7.61 -10.98 -0.08 10.60 16 19 O -0.56 -12.32 16.24 5.56 0.09 -12.23 16 20 C -0.13 -2.28 6.19 -91.77 -0.57 -2.85 16 21 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 22 C -0.11 -1.46 10.24 -26.72 -0.27 -1.73 16 23 C -0.20 -3.06 5.05 -154.51 -0.78 -3.84 16 24 C -0.11 -1.61 10.16 -26.73 -0.27 -1.88 16 25 C -0.13 -1.72 10.53 -26.73 -0.28 -2.01 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.07 1.60 7.33 -51.93 -0.38 1.22 16 28 H 0.04 0.73 6.39 -51.93 -0.33 0.40 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.42 7.54 -51.92 -0.39 1.03 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 8.19 7.33 -40.82 -0.30 7.89 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -29.68 330.73 -8.52 -38.20 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.51 Total: 10.99 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -2.20 Total: 1.57 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.13 Total: -50.89 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.29 Total: -19.61 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.64 Total: 14.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -8.52 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.106 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds