Wall clock time and date at job start Tue Mar 31 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48509 * 109.47126 * 275.45342 * 3 2 1 5 5 H 1.48495 * 109.47359 * 35.45632 * 3 2 1 6 6 H 1.48499 * 109.47123 * 155.45871 * 3 2 1 7 7 C 1.38814 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99782 * 28.79297 * 7 2 1 9 9 N 1.36934 * 120.00045 * 208.79500 * 7 2 1 10 10 C 1.47159 * 120.97970 * 44.88005 * 9 7 2 11 11 C 1.53302 * 108.38055 * 129.48455 * 10 9 7 12 12 O 1.42963 * 109.22241 * 52.30633 * 11 10 9 13 13 C 1.42969 * 114.16280 * 297.41573 * 12 11 10 14 14 C 1.47146 * 120.98517 * 224.89942 * 9 7 2 15 15 H 1.09003 * 109.70846 * 110.77321 * 14 9 7 16 16 C 1.52997 * 109.68117 * 350.24346 * 14 9 7 17 17 N 1.46501 * 109.47530 * 60.77313 * 16 14 9 18 18 C 1.34777 * 120.00146 * 179.97438 * 17 16 14 19 19 O 1.21276 * 120.00140 * 0.02562 * 18 17 16 20 20 C 1.50705 * 119.99758 * 180.02562 * 18 17 16 21 21 H 1.09004 * 115.56354 * 325.69954 * 20 18 17 22 22 C 1.53001 * 117.49821 * 111.39266 * 20 18 17 23 23 C 1.52995 * 117.49798 * 180.02562 * 20 18 17 24 24 C 1.52991 * 138.58633 * 23.40249 * 23 20 18 25 25 C 1.52996 * 138.58860 * 121.61593 * 23 20 18 26 26 H 0.97006 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.68369 * 9.76844 * 10 9 7 28 28 H 1.08990 * 109.71253 * 249.22227 * 10 9 7 29 29 H 1.09000 * 109.51523 * 292.37557 * 11 10 9 30 30 H 1.09000 * 109.54893 * 172.24737 * 11 10 9 31 31 H 1.08999 * 109.51051 * 302.65787 * 13 12 11 32 32 H 1.08997 * 109.55294 * 182.53259 * 13 12 11 33 33 H 1.09007 * 109.46828 * 300.77940 * 16 14 9 34 34 H 1.08997 * 109.47590 * 180.77670 * 16 14 9 35 35 H 0.97004 * 120.00032 * 0.02562 * 17 16 14 36 36 H 1.08996 * 117.49851 * 0.02562 * 22 20 18 37 37 H 1.08994 * 117.49573 * 214.97304 * 22 20 18 38 38 H 1.09002 * 117.49803 * 238.38145 * 24 23 20 39 39 H 1.08998 * 117.50270 * 23.40408 * 24 23 20 40 40 H 1.09004 * 117.49578 * 336.59728 * 25 23 20 41 41 H 1.08992 * 117.50037 * 121.59678 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3823 2.1130 -1.3938 5 1 1.5100 2.6167 0.8121 6 1 3.6006 1.4097 0.5815 7 6 2.0103 -1.2021 -0.0005 8 1 1.5705 -2.0794 -0.4514 9 7 3.2527 -1.2756 0.5706 10 6 3.5206 -0.6648 1.8824 11 6 4.1970 -1.7123 2.7743 12 8 5.3247 -2.2588 2.0862 13 6 4.9948 -2.9512 0.8796 14 6 4.3593 -1.9673 -0.1092 15 1 5.1037 -1.2399 -0.4331 16 6 3.8226 -2.7301 -1.3220 17 7 3.2101 -1.7865 -2.2606 18 6 2.6671 -2.2355 -3.4095 19 8 2.6850 -3.4207 -3.6662 20 6 2.0376 -1.2648 -4.3752 21 1 1.5352 -0.4099 -3.9224 22 6 2.7442 -1.0413 -5.7137 23 6 1.4379 -1.8365 -5.6614 24 6 0.8821 -3.1656 -6.1763 25 6 0.0878 -1.8739 -6.3801 26 1 -0.4851 0.8401 0.0004 27 1 2.5829 -0.3459 2.3373 28 1 4.1802 0.1942 1.7601 29 1 3.4885 -2.5086 3.0022 30 1 4.5282 -1.2433 3.7008 31 1 4.2892 -3.7520 1.1007 32 1 5.8995 -3.3735 0.4423 33 1 3.0756 -3.4535 -0.9948 34 1 4.6426 -3.2522 -1.8150 35 1 3.1960 -0.8385 -2.0554 36 1 3.6641 -1.5968 -5.8960 37 1 2.7067 -0.0396 -6.1415 38 1 1.3602 -3.6058 -7.0513 39 1 0.5086 -3.8749 -5.4377 40 1 -0.8083 -1.7334 -5.7755 41 1 0.0432 -1.4640 -7.3890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051135853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:34 Heat of formation + Delta-G solvation = -8.356397 kcal Electronic energy + Delta-G solvation = -22939.492225 eV Core-core repulsion = 19628.774133 eV Total energy + Delta-G solvation = -3310.718092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04790 -40.14158 -38.43933 -36.90340 -35.20395 -33.79393 -33.46130 -32.38634 -29.25399 -27.40646 -25.10905 -24.72146 -23.32695 -23.28419 -21.64328 -21.29620 -20.07310 -18.72787 -17.94626 -17.53213 -17.24363 -16.68420 -16.54519 -15.99988 -15.91675 -15.81174 -15.55939 -15.40458 -15.08799 -14.62330 -14.54114 -13.90539 -13.46098 -13.43479 -13.09934 -12.71694 -12.63044 -12.58344 -12.36633 -12.25497 -12.09913 -11.59795 -11.31221 -11.18320 -11.06623 -10.98244 -10.90525 -10.64367 -10.44092 -9.86253 -8.58393 -8.23110 -5.63978 1.35076 1.45279 1.54140 1.58427 2.25046 2.44696 2.75000 2.82189 2.95679 3.02319 3.25844 3.36156 3.80810 3.88700 3.98050 4.14587 4.20185 4.26420 4.38279 4.45681 4.49784 4.57192 4.58146 4.65375 4.72824 4.73792 4.75684 4.80068 4.82395 4.96840 4.99860 5.03431 5.05512 5.25341 5.26891 5.62035 5.90496 6.22975 6.27292 6.70887 6.91910 7.36266 7.55611 8.08246 8.95333 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.006138 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.593856 B = 4560.319041 C = 5517.892310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.305 1.305 6 H -0.237 1.237 7 C -0.247 4.247 8 H 0.035 0.965 9 N -0.612 5.612 10 C 0.103 3.897 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.059 3.941 14 C 0.122 3.878 15 H 0.054 0.946 16 C 0.144 3.856 17 N -0.690 5.690 18 C 0.535 3.465 19 O -0.588 6.588 20 C -0.164 4.164 21 H 0.114 0.886 22 C -0.073 4.073 23 C -0.225 4.225 24 C -0.121 4.121 25 C -0.112 4.112 26 H 0.263 0.737 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.406 0.594 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 -0.358 -6.839 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.161 1.161 7 C -0.377 4.377 8 H 0.052 0.948 9 N -0.339 5.339 10 C -0.022 4.022 11 C -0.027 4.027 12 O -0.310 6.310 13 C -0.019 4.019 14 C 0.016 3.984 15 H 0.072 0.928 16 C 0.020 3.980 17 N -0.339 5.339 18 C 0.323 3.677 19 O -0.471 6.471 20 C -0.185 4.185 21 H 0.132 0.868 22 C -0.110 4.110 23 C -0.225 4.225 24 C -0.158 4.158 25 C -0.149 4.149 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.232 -1.092 -6.912 10.804 hybrid contribution -0.778 1.297 0.479 1.586 sum 7.454 0.205 -6.432 9.848 Atomic orbital electron populations 1.70095 1.08016 1.27531 1.51487 1.26107 0.95077 1.00421 0.97569 0.86474 0.81349 0.81404 0.78148 1.20804 1.23195 1.16060 1.18225 0.91079 0.93289 1.35080 0.94773 1.44434 1.07121 1.65495 1.16827 1.22082 0.98797 0.95215 0.86132 1.23085 0.88313 0.96072 0.95241 1.87830 1.32532 1.73229 1.37374 1.22954 1.00993 0.92982 0.85014 1.21712 0.90399 0.94475 0.91804 0.92788 1.21069 0.96499 0.91535 0.88880 1.45853 1.57735 1.11877 1.18412 1.19970 0.77459 0.88336 0.81985 1.90581 1.60668 1.18238 1.77569 1.21928 1.05912 1.00850 0.89771 0.86788 1.22749 0.93583 1.01483 0.93176 1.21425 0.98181 1.04395 0.98536 1.22580 1.01695 0.89720 1.01777 1.22856 0.91283 0.99527 1.01217 0.92803 0.92361 0.94256 0.93825 0.86689 0.93673 0.86043 0.94308 0.90045 0.75752 0.87866 0.85043 0.86804 0.90751 0.89166 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.97 21.65 0.30 -53.85 16 2 C 0.01 0.40 5.03 84.86 0.43 0.83 16 3 Si 0.90 40.44 27.28 68.60 1.87 42.31 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.24 -9.90 5.06 99.48 0.50 -9.39 16 7 C -0.25 -12.61 6.68 84.03 0.56 -12.05 16 8 H 0.03 2.05 6.81 -2.91 -0.02 2.03 16 9 N -0.61 -26.12 2.43 -673.75 -1.64 -27.76 16 10 C 0.10 3.99 4.75 86.35 0.41 4.40 16 11 C 0.05 1.64 6.98 72.08 0.50 2.15 16 12 O -0.39 -12.82 10.74 -148.98 -1.60 -14.42 16 13 C 0.06 1.82 6.29 72.08 0.45 2.27 16 14 C 0.12 4.34 3.21 44.96 0.14 4.48 16 15 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.14 5.36 4.48 86.38 0.39 5.74 16 17 N -0.69 -27.24 4.03 -463.06 -1.87 -29.11 16 18 C 0.54 21.63 7.61 87.66 0.67 22.29 16 19 O -0.59 -26.65 16.24 -3.02 -0.05 -26.70 16 20 C -0.16 -5.62 6.19 -11.54 -0.07 -5.69 16 21 H 0.11 4.09 8.14 -2.38 -0.02 4.07 16 22 C -0.07 -1.86 10.24 30.60 0.31 -1.55 16 23 C -0.22 -6.70 5.05 -52.18 -0.26 -6.96 16 24 C -0.12 -3.38 10.16 30.59 0.31 -3.07 16 25 C -0.11 -2.72 10.53 30.59 0.32 -2.40 16 26 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 27 H 0.06 2.45 7.33 -2.39 -0.02 2.43 16 28 H 0.04 1.52 6.39 -2.39 -0.02 1.50 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.04 1.66 7.54 -2.38 -0.02 1.65 16 34 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.41 16.36 7.33 -92.71 -0.68 15.68 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.95 330.73 1.33 -64.63 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.14 Total: 34.46 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.16 Total: 10.44 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.20 Total: -110.72 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.65 Total: -41.13 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.87 Total: 42.31 kcal Total: -65.95 1.33 -64.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.272 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds