Wall clock time and date at job start Tue Mar 31 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47177 * 269.99944 * 3 2 1 5 5 H 1.48497 * 109.47312 * 29.99998 * 3 2 1 6 6 H 1.48502 * 109.46928 * 150.00601 * 3 2 1 7 7 C 1.38811 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 169.09402 * 7 2 1 9 9 N 1.36936 * 120.00130 * 349.08643 * 7 2 1 10 10 C 1.47155 * 120.98263 * 329.00301 * 9 7 2 11 11 C 1.53292 * 108.41414 * 230.53787 * 10 9 7 12 12 O 1.42958 * 109.22474 * 307.67841 * 11 10 9 13 13 C 1.42961 * 114.16631 * 62.57656 * 12 11 10 14 14 C 1.47221 * 121.03031 * 149.01982 * 9 7 2 15 15 H 1.09004 * 109.67781 * 249.19517 * 14 9 7 16 16 C 1.52998 * 109.67060 * 9.73603 * 14 9 7 17 17 N 1.46492 * 109.47249 * 298.73166 * 16 14 9 18 18 C 1.34775 * 119.99936 * 179.97438 * 17 16 14 19 19 O 1.21280 * 120.00295 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00002 * 179.97438 * 18 17 16 21 21 H 1.09001 * 115.54858 * 34.28656 * 20 18 17 22 22 C 1.52996 * 117.50404 * 248.60740 * 20 18 17 23 23 C 1.52986 * 60.00073 * 252.51458 * 22 20 18 24 24 C 1.52995 * 138.59026 * 130.89781 * 23 22 20 25 25 C 1.53000 * 138.58570 * 229.10859 * 23 22 20 26 26 H 0.97002 * 119.99806 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.68402 * 110.79440 * 10 9 7 28 28 H 1.09007 * 109.68295 * 350.27957 * 10 9 7 29 29 H 1.09003 * 109.51161 * 67.60041 * 11 10 9 30 30 H 1.08996 * 109.51330 * 187.74944 * 11 10 9 31 31 H 1.09006 * 109.50925 * 57.35175 * 13 12 11 32 32 H 1.09002 * 109.51055 * 177.49409 * 13 12 11 33 33 H 1.09005 * 109.47004 * 58.73539 * 16 14 9 34 34 H 1.09003 * 109.46940 * 178.72949 * 16 14 9 35 35 H 0.96998 * 120.00437 * 359.97438 * 17 16 14 36 36 H 1.09008 * 117.49355 * 0.02562 * 22 20 18 37 37 H 1.09002 * 117.50077 * 144.99297 * 22 20 18 38 38 H 1.08997 * 117.49900 * 238.37788 * 24 23 22 39 39 H 1.09000 * 117.49787 * 23.39758 * 24 23 22 40 40 H 1.09003 * 117.49637 * 336.59348 * 25 23 22 41 41 H 1.08992 * 117.50070 * 121.61519 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0756 -1.2106 -0.1775 9 7 1.3441 -2.3774 0.2235 10 6 0.1541 -2.4208 1.0880 11 6 0.3409 -3.5452 2.1130 12 8 0.6720 -4.7558 1.4287 13 6 1.9034 -4.7008 0.7045 14 6 1.7967 -3.6356 -0.3927 15 1 1.0764 -3.9553 -1.1458 16 6 3.1655 -3.4271 -1.0436 17 7 3.0571 -2.4123 -2.0945 18 6 4.1455 -2.0623 -2.8081 19 8 5.2146 -2.5878 -2.5807 20 6 4.0338 -1.0187 -3.8896 21 1 3.3219 -0.2162 -3.6968 22 6 4.2011 -1.4817 -5.3382 23 6 5.3050 -0.6650 -4.6639 24 6 6.8214 -0.7258 -4.4694 25 6 6.1640 0.5664 -4.9584 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7315 -2.6181 0.4840 28 1 0.0409 -1.4678 1.6049 29 1 1.1466 -3.2825 2.7987 30 1 -0.5837 -3.6847 2.6731 31 1 2.7148 -4.4424 1.3851 32 1 2.1029 -5.6718 0.2512 33 1 3.8794 -3.0949 -0.2898 34 1 3.5075 -4.3660 -1.4790 35 1 2.2020 -1.9922 -2.2767 36 1 4.3915 -2.5414 -5.5090 37 1 3.5991 -0.9840 -6.0984 38 1 7.1973 -0.7434 -3.4465 39 1 7.3988 -1.3016 -5.1927 40 1 6.3090 0.8407 -6.0033 41 1 6.1074 1.3989 -4.2571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051135856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:40 Heat of formation + Delta-G solvation = 8.289902 kcal Electronic energy + Delta-G solvation = -22867.560591 eV Core-core repulsion = 19557.564337 eV Total energy + Delta-G solvation = -3309.996254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60612 -38.51821 -37.19494 -35.24007 -33.54834 -32.50901 -31.43667 -30.41649 -27.26686 -25.92186 -23.49738 -23.27519 -22.29703 -21.57837 -20.06031 -19.70300 -18.79774 -17.01991 -16.30109 -15.90230 -15.70546 -15.09802 -14.93294 -14.69251 -14.51968 -14.20576 -13.93391 -13.71531 -13.50023 -13.00753 -12.68275 -12.17748 -11.93751 -11.60260 -11.48615 -11.36398 -11.06844 -10.89068 -10.76111 -10.42483 -10.28092 -10.08432 -10.06188 -9.94389 -9.86047 -9.67567 -9.32203 -8.95380 -8.68392 -8.25550 -6.74761 -5.92607 -3.41925 2.97196 3.25492 3.34576 3.38124 3.53978 3.91409 4.06197 4.32588 4.45959 4.52808 4.94636 5.00129 5.13351 5.25079 5.45948 5.58245 5.59556 5.67462 5.69683 5.74192 5.75344 5.81903 5.86665 6.01106 6.01180 6.06636 6.14587 6.15912 6.23657 6.26939 6.32149 6.51295 6.75106 7.05841 7.13306 7.47429 7.68878 7.85420 8.24342 8.28503 8.86746 9.03982 9.64264 10.23525 11.13996 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.006248 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.813419 B = 4480.656993 C = 5703.726841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.137 3.863 17 N -0.691 5.691 18 C 0.536 3.464 19 O -0.559 6.559 20 C -0.136 4.136 21 H 0.125 0.875 22 C -0.102 4.102 23 C -0.201 4.201 24 C -0.113 4.113 25 C -0.134 4.134 26 H 0.255 0.745 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -2.851 -6.276 8.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.342 5.342 18 C 0.322 3.678 19 O -0.438 6.438 20 C -0.157 4.157 21 H 0.143 0.857 22 C -0.139 4.139 23 C -0.201 4.201 24 C -0.150 4.150 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.253 0.747 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.695 -3.240 -6.080 8.938 hybrid contribution -0.045 1.513 0.073 1.515 sum 5.650 -1.727 -6.007 8.426 Atomic orbital electron populations 1.69979 1.05166 1.25659 1.53589 1.25135 0.95297 0.98190 1.00439 0.86390 0.79286 0.83784 0.77980 1.21135 1.21487 1.20445 1.19222 0.91354 0.83289 1.44461 0.90928 1.44103 1.31982 1.02819 1.52760 1.21416 0.88877 0.96861 0.91025 1.23353 0.99131 0.86501 0.95336 1.87799 1.40282 1.35985 1.67053 1.22863 0.86670 0.98704 0.94055 1.21444 0.93732 0.89293 0.93772 0.94099 1.21146 0.97467 0.90360 0.89782 1.45929 1.12293 1.41153 1.34823 1.19516 0.84030 0.82331 0.81929 1.90622 1.28109 1.55752 1.69349 1.22008 0.99989 1.00781 0.92878 0.85736 1.22617 0.98542 0.99768 0.93016 1.21111 0.90125 1.03656 1.05241 1.22540 0.91326 0.98703 1.02402 1.22740 1.01290 0.91338 1.01692 0.93455 0.95269 0.88954 0.94127 0.90227 0.93519 0.89915 0.91574 0.92435 0.74694 0.88303 0.87904 0.88295 0.88841 0.88603 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 11.13 55.49 0.62 -23.47 16 2 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 3 Si 0.90 20.73 29.57 -169.99 -5.03 15.70 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.27 7.12 -15.06 -0.11 -6.37 16 8 H 0.07 1.84 5.81 -52.49 -0.31 1.54 16 9 N -0.59 -13.55 3.04 -164.25 -0.50 -14.05 16 10 C 0.14 3.25 5.38 -3.53 -0.02 3.23 16 11 C 0.03 0.67 6.98 37.31 0.26 0.93 16 12 O -0.39 -7.64 10.74 -35.23 -0.38 -8.02 16 13 C 0.06 1.00 6.29 37.31 0.23 1.23 16 14 C 0.12 2.44 3.20 -67.39 -0.22 2.22 16 15 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.14 2.55 4.44 -4.05 -0.02 2.54 16 17 N -0.69 -13.12 3.80 -60.30 -0.23 -13.35 16 18 C 0.54 10.17 7.61 -10.99 -0.08 10.08 16 19 O -0.56 -11.93 16.24 5.56 0.09 -11.84 16 20 C -0.14 -2.19 6.19 -91.78 -0.57 -2.76 16 21 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 22 C -0.10 -1.34 10.23 -26.74 -0.27 -1.62 16 23 C -0.20 -2.94 5.05 -154.52 -0.78 -3.72 16 24 C -0.11 -1.53 10.16 -26.73 -0.27 -1.81 16 25 C -0.13 -1.63 10.53 -26.73 -0.28 -1.92 16 26 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.42 8.20 7.38 -40.82 -0.30 7.90 16 36 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -28.85 333.42 -8.99 -37.85 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.38 Total: 9.98 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -2.21 Total: 2.18 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.11 Total: -50.87 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.29 Total: -19.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.85 -8.99 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.135 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds