Wall clock time and date at job start Tue Mar 31 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47177 * 269.99944 * 3 2 1 5 5 H 1.48497 * 109.47312 * 29.99998 * 3 2 1 6 6 H 1.48502 * 109.46928 * 150.00601 * 3 2 1 7 7 C 1.38811 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00202 * 169.09402 * 7 2 1 9 9 N 1.36936 * 120.00130 * 349.08643 * 7 2 1 10 10 C 1.47155 * 120.98263 * 329.00301 * 9 7 2 11 11 C 1.53292 * 108.41414 * 230.53787 * 10 9 7 12 12 O 1.42958 * 109.22474 * 307.67841 * 11 10 9 13 13 C 1.42961 * 114.16631 * 62.57656 * 12 11 10 14 14 C 1.47221 * 121.03031 * 149.01982 * 9 7 2 15 15 H 1.09004 * 109.67781 * 249.19517 * 14 9 7 16 16 C 1.52998 * 109.67060 * 9.73603 * 14 9 7 17 17 N 1.46492 * 109.47249 * 298.73166 * 16 14 9 18 18 C 1.34775 * 119.99936 * 179.97438 * 17 16 14 19 19 O 1.21280 * 120.00295 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00002 * 179.97438 * 18 17 16 21 21 H 1.09001 * 115.54858 * 34.28656 * 20 18 17 22 22 C 1.52996 * 117.50404 * 248.60740 * 20 18 17 23 23 C 1.52986 * 60.00073 * 252.51458 * 22 20 18 24 24 C 1.52995 * 138.59026 * 130.89781 * 23 22 20 25 25 C 1.53000 * 138.58570 * 229.10859 * 23 22 20 26 26 H 0.97002 * 119.99806 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.68402 * 110.79440 * 10 9 7 28 28 H 1.09007 * 109.68295 * 350.27957 * 10 9 7 29 29 H 1.09003 * 109.51161 * 67.60041 * 11 10 9 30 30 H 1.08996 * 109.51330 * 187.74944 * 11 10 9 31 31 H 1.09006 * 109.50925 * 57.35175 * 13 12 11 32 32 H 1.09002 * 109.51055 * 177.49409 * 13 12 11 33 33 H 1.09005 * 109.47004 * 58.73539 * 16 14 9 34 34 H 1.09003 * 109.46940 * 178.72949 * 16 14 9 35 35 H 0.96998 * 120.00437 * 359.97438 * 17 16 14 36 36 H 1.09008 * 117.49355 * 0.02562 * 22 20 18 37 37 H 1.09002 * 117.50077 * 144.99297 * 22 20 18 38 38 H 1.08997 * 117.49900 * 238.37788 * 24 23 22 39 39 H 1.09000 * 117.49787 * 23.39758 * 24 23 22 40 40 H 1.09003 * 117.49637 * 336.59348 * 25 23 22 41 41 H 1.08992 * 117.50070 * 121.61519 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0756 -1.2106 -0.1775 9 7 1.3441 -2.3774 0.2235 10 6 0.1541 -2.4208 1.0880 11 6 0.3409 -3.5452 2.1130 12 8 0.6720 -4.7558 1.4287 13 6 1.9034 -4.7008 0.7045 14 6 1.7967 -3.6356 -0.3927 15 1 1.0764 -3.9553 -1.1458 16 6 3.1655 -3.4271 -1.0436 17 7 3.0571 -2.4123 -2.0945 18 6 4.1455 -2.0623 -2.8081 19 8 5.2146 -2.5878 -2.5807 20 6 4.0338 -1.0187 -3.8896 21 1 3.3219 -0.2162 -3.6968 22 6 4.2011 -1.4817 -5.3382 23 6 5.3050 -0.6650 -4.6639 24 6 6.8214 -0.7258 -4.4694 25 6 6.1640 0.5664 -4.9584 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7315 -2.6181 0.4840 28 1 0.0409 -1.4678 1.6049 29 1 1.1466 -3.2825 2.7987 30 1 -0.5837 -3.6847 2.6731 31 1 2.7148 -4.4424 1.3851 32 1 2.1029 -5.6718 0.2512 33 1 3.8794 -3.0949 -0.2898 34 1 3.5075 -4.3660 -1.4790 35 1 2.2020 -1.9922 -2.2767 36 1 4.3915 -2.5414 -5.5090 37 1 3.5991 -0.9840 -6.0984 38 1 7.1973 -0.7434 -3.4465 39 1 7.3988 -1.3016 -5.1927 40 1 6.3090 0.8407 -6.0033 41 1 6.1074 1.3989 -4.2571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051135856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:40 Heat of formation + Delta-G solvation = -9.237826 kcal Electronic energy + Delta-G solvation = -22868.320650 eV Core-core repulsion = 19557.564337 eV Total energy + Delta-G solvation = -3310.756313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04699 -40.05493 -38.44368 -36.86896 -35.28119 -33.70923 -33.09708 -32.09572 -29.04169 -27.43465 -25.27768 -24.65209 -23.29242 -23.14268 -21.49150 -21.27193 -20.08513 -18.68325 -17.85118 -17.57863 -17.22232 -16.51262 -16.28035 -16.18003 -15.88695 -15.71768 -15.46120 -15.28787 -15.04502 -14.71384 -14.34516 -13.59046 -13.41766 -13.13974 -12.92270 -12.73120 -12.62414 -12.50602 -12.36435 -12.17063 -12.01862 -11.86689 -11.32051 -11.18243 -11.06939 -10.94527 -10.83415 -10.59644 -10.53017 -9.85087 -8.63113 -7.88484 -5.39035 1.38480 1.44157 1.50328 1.57504 2.22929 2.43840 2.75628 2.88964 3.03203 3.27603 3.35283 3.43626 3.81907 3.88838 4.02384 4.16876 4.21556 4.32677 4.46390 4.50022 4.56985 4.62160 4.63968 4.65767 4.73242 4.74346 4.76794 4.80486 4.99272 4.99979 5.04455 5.10503 5.26498 5.29185 5.57150 5.63718 5.67972 6.28344 6.36174 6.71642 7.09770 7.35149 7.75223 8.31489 9.15972 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.006248 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.813419 B = 4480.656993 C = 5703.726841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.032 4.032 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.038 0.962 16 C 0.143 3.857 17 N -0.694 5.694 18 C 0.534 3.466 19 O -0.587 6.587 20 C -0.162 4.162 21 H 0.121 0.879 22 C -0.076 4.076 23 C -0.225 4.225 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.250 0.750 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -3.383 -7.440 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.315 6.315 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.056 0.944 16 C 0.019 3.981 17 N -0.343 5.343 18 C 0.321 3.679 19 O -0.469 6.469 20 C -0.183 4.183 21 H 0.139 0.861 22 C -0.113 4.113 23 C -0.225 4.225 24 C -0.159 4.159 25 C -0.149 4.149 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.420 -3.789 -7.246 10.396 hybrid contribution -0.227 1.624 0.439 1.698 sum 6.193 -2.165 -6.808 9.454 Atomic orbital electron populations 1.70095 1.06063 1.25639 1.55338 1.25597 0.95772 1.00247 1.01237 0.85640 0.77827 0.81291 0.77910 1.20521 1.21997 1.21110 1.19227 0.90994 0.84085 1.42809 0.91709 1.44299 1.31822 1.03544 1.53402 1.21248 0.88105 0.97017 0.91315 1.23221 1.00527 0.85217 0.94220 1.87804 1.41027 1.35596 1.67117 1.22984 0.86099 0.99684 0.93305 1.21568 0.93796 0.88327 0.94341 0.94418 1.21090 0.96411 0.91185 0.89423 1.45975 1.12198 1.41234 1.34900 1.20009 0.83323 0.82397 0.82130 1.90596 1.28928 1.57050 1.70313 1.21960 1.01878 1.00563 0.93883 0.86136 1.22724 0.97353 0.99983 0.91197 1.21423 0.90226 1.06001 1.04886 1.22590 0.90977 1.00415 1.01886 1.22866 0.98520 0.90250 1.03261 0.94018 0.97456 0.91585 0.93896 0.87675 0.93378 0.86387 0.93515 0.90308 0.75221 0.88171 0.85086 0.90452 0.87066 0.85647 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.50 11.13 21.65 0.24 -50.26 16 2 C -0.03 -1.65 5.06 84.86 0.43 -1.22 16 3 Si 0.94 43.12 29.57 68.60 2.03 45.15 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.24 -12.02 7.12 84.03 0.60 -11.42 16 8 H 0.07 3.33 5.81 -2.91 -0.02 3.31 16 9 N -0.60 -27.81 3.04 -673.57 -2.04 -29.85 16 10 C 0.15 6.78 5.38 86.35 0.46 7.25 16 11 C 0.05 1.71 6.98 72.08 0.50 2.21 16 12 O -0.40 -14.60 10.74 -148.98 -1.60 -16.20 16 13 C 0.06 1.92 6.29 72.08 0.45 2.38 16 14 C 0.13 4.81 3.20 44.95 0.14 4.96 16 15 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 16 C 0.14 5.26 4.44 86.38 0.38 5.64 16 17 N -0.69 -26.33 3.80 -463.07 -1.76 -28.09 16 18 C 0.53 20.20 7.61 87.66 0.67 20.87 16 19 O -0.59 -25.11 16.24 -3.03 -0.05 -25.16 16 20 C -0.16 -5.12 6.19 -11.54 -0.07 -5.19 16 21 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 22 C -0.08 -1.82 10.23 30.59 0.31 -1.50 16 23 C -0.22 -6.19 5.05 -52.19 -0.26 -6.45 16 24 C -0.12 -3.15 10.16 30.59 0.31 -2.83 16 25 C -0.11 -2.47 10.53 30.59 0.32 -2.14 16 26 H 0.25 13.44 8.31 -92.71 -0.77 12.66 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 3.36 6.32 -2.38 -0.02 3.34 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.05 1.90 7.53 -2.38 -0.02 1.89 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 16.38 7.38 -92.71 -0.68 15.69 16 36 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -62.09 333.42 1.41 -60.68 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.34 Total: 31.18 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 4.25 Total: 12.54 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.56 Total: -108.19 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.65 Total: -41.36 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.09 1.41 -60.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.443 kcal (2) G-P(sol) polarization free energy of solvation -62.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds