Wall clock time and date at job start Tue Mar 31 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47180 * 268.93556 * 3 2 1 5 5 H 1.48501 * 109.47070 * 28.93501 * 3 2 1 6 6 H 1.48500 * 109.47635 * 148.93556 * 3 2 1 7 7 C 1.38819 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00100 * 343.35707 * 7 2 1 9 9 N 1.36934 * 119.99842 * 163.35554 * 7 2 1 10 10 C 1.47156 * 120.98238 * 329.44071 * 9 7 2 11 11 C 1.53289 * 108.38526 * 230.51558 * 10 9 7 12 12 O 1.42962 * 109.22797 * 307.70171 * 11 10 9 13 13 C 1.42962 * 114.16539 * 62.57628 * 12 11 10 14 14 C 1.47148 * 120.98208 * 149.42526 * 9 7 2 15 15 H 1.08997 * 109.68582 * 249.23971 * 14 9 7 16 16 C 1.52999 * 109.68054 * 9.76117 * 14 9 7 17 17 N 1.46496 * 109.47043 * 299.24050 * 16 14 9 18 18 C 1.34775 * 120.00036 * 179.97438 * 17 16 14 19 19 O 1.21285 * 120.00237 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99998 * 180.02562 * 18 17 16 21 21 H 1.08994 * 115.55264 * 325.58680 * 20 18 17 22 22 C 1.52998 * 117.49834 * 111.25795 * 20 18 17 23 23 C 1.53001 * 117.49907 * 179.91631 * 20 18 17 24 24 C 1.52985 * 138.59163 * 121.59305 * 23 20 18 25 25 C 1.52993 * 138.58517 * 23.37346 * 23 20 18 26 26 H 0.97002 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.68109 * 350.24448 * 10 9 7 28 28 H 1.09010 * 109.68021 * 110.75781 * 10 9 7 29 29 H 1.08998 * 109.51478 * 67.62631 * 11 10 9 30 30 H 1.09011 * 109.51332 * 187.72304 * 11 10 9 31 31 H 1.09000 * 109.51001 * 177.49713 * 13 12 11 32 32 H 1.09000 * 109.50818 * 57.34864 * 13 12 11 33 33 H 1.09005 * 109.46891 * 179.24629 * 16 14 9 34 34 H 1.09000 * 109.47343 * 59.24895 * 16 14 9 35 35 H 0.97001 * 120.00205 * 0.02562 * 17 16 14 36 36 H 1.09004 * 117.50049 * 215.00224 * 22 20 18 37 37 H 1.08997 * 117.50066 * 0.02562 * 22 20 18 38 38 H 1.09002 * 117.49865 * 336.60055 * 24 23 20 39 39 H 1.08996 * 117.50053 * 121.61702 * 24 23 20 40 40 H 1.09003 * 117.50131 * 238.38277 * 25 23 20 41 41 H 1.08998 * 117.49999 * 23.41452 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5202 2.0334 -1.3998 5 1 1.4365 2.6591 0.6774 6 1 3.5363 1.4469 0.7224 7 6 2.0103 -1.2022 0.0005 8 1 1.5043 -2.1178 0.2688 9 7 3.3366 -1.2271 -0.3391 10 6 3.8914 -0.2581 -1.2976 11 6 4.6799 -1.0287 -2.3626 12 8 5.6186 -1.8940 -1.7192 13 6 5.0202 -2.8983 -0.8964 14 6 4.2492 -2.2234 0.2438 15 1 4.9485 -1.7302 0.9189 16 6 3.4436 -3.2725 1.0127 17 7 2.7029 -2.6216 2.0962 18 6 1.9186 -3.3543 2.9113 19 8 1.8263 -4.5526 2.7482 20 6 1.1562 -2.6847 4.0256 21 1 1.6570 -1.8382 4.4953 22 6 -0.3676 -2.6244 3.9021 23 6 0.2817 -3.5706 4.9151 24 6 0.1482 -3.9346 6.3950 25 6 0.1900 -5.0385 5.3365 26 1 -0.4850 0.8400 -0.0004 27 1 3.0805 0.2960 -1.7704 28 1 4.5546 0.4337 -0.7780 29 1 3.9928 -1.6217 -2.9663 30 1 5.2118 -0.3245 -3.0024 31 1 5.7978 -3.5392 -0.4807 32 1 4.3344 -3.4980 -1.4947 33 1 4.1217 -4.0160 1.4317 34 1 2.7428 -3.7606 0.3355 35 1 2.7764 -1.6632 2.2266 36 1 -0.8693 -1.7381 4.2907 37 1 -0.8187 -3.0693 3.0153 38 1 1.0283 -3.8084 7.0257 39 1 -0.8086 -3.7361 6.8778 40 1 -0.7395 -5.5664 5.1230 41 1 1.0975 -5.6386 5.2708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051135857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:43 Heat of formation + Delta-G solvation = 15.347365 kcal Electronic energy + Delta-G solvation = -22921.529385 eV Core-core repulsion = 19611.839165 eV Total energy + Delta-G solvation = -3309.690219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.58480 -38.74446 -37.14861 -35.37397 -33.61132 -32.40588 -31.66339 -30.94034 -27.58198 -25.95742 -23.55042 -23.22425 -22.24528 -21.97623 -20.01708 -19.83646 -18.72129 -17.06866 -16.28061 -16.10825 -15.84155 -15.19917 -15.02666 -14.82414 -14.54077 -14.47466 -14.00024 -13.82145 -13.65952 -13.10623 -12.58394 -12.21107 -12.02363 -11.88510 -11.63696 -11.41286 -11.29170 -11.14603 -10.78827 -10.56692 -10.35742 -9.94430 -9.85818 -9.82862 -9.74454 -9.64926 -9.45362 -9.09114 -8.70386 -8.24818 -7.04098 -6.05700 -3.49164 3.08925 3.20639 3.37907 3.38966 3.55838 3.99516 4.17010 4.29922 4.39687 4.56863 4.64425 5.05210 5.13625 5.19806 5.41901 5.46915 5.54536 5.63201 5.69185 5.73607 5.78029 5.82110 5.87509 5.89144 5.89930 6.01796 6.05782 6.09595 6.11354 6.23048 6.29723 6.33206 6.37443 6.49421 6.71403 7.14376 7.57857 7.79165 8.22119 8.28368 8.77091 8.91780 9.56589 9.93437 11.08184 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.005991 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.358514 B = 4672.642245 C = 5802.655984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.098 0.902 9 N -0.606 5.606 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.138 3.862 17 N -0.692 5.692 18 C 0.541 3.459 19 O -0.559 6.559 20 C -0.132 4.132 21 H 0.118 0.882 22 C -0.089 4.089 23 C -0.205 4.205 24 C -0.134 4.134 25 C -0.114 4.114 26 H 0.263 0.737 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.412 0.588 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -3.707 6.076 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.115 0.885 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.063 0.937 16 C 0.013 3.987 17 N -0.343 5.343 18 C 0.327 3.673 19 O -0.438 6.438 20 C -0.153 4.153 21 H 0.136 0.864 22 C -0.126 4.126 23 C -0.205 4.205 24 C -0.171 4.171 25 C -0.151 4.151 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.611 -4.436 5.933 8.725 hybrid contribution 0.181 1.747 -0.106 1.760 sum 4.791 -2.689 5.827 8.009 Atomic orbital electron populations 1.69790 1.05572 1.26571 1.52280 1.25327 0.95169 0.97356 0.99081 0.87029 0.79634 0.84769 0.77417 1.21544 1.23143 1.19673 1.19024 0.82637 0.94816 1.43023 0.88483 1.44434 1.06343 1.35390 1.47131 1.22060 0.97280 0.92797 0.91345 1.23065 0.92136 0.93158 0.94854 1.87825 1.33443 1.45659 1.63758 1.22912 0.97168 0.89954 0.92420 1.21450 0.92068 0.90838 0.93508 0.93673 1.21110 0.94568 0.94168 0.88821 1.45860 1.45982 1.12241 1.30173 1.19509 0.79058 0.86655 0.82125 1.90620 1.65038 1.14933 1.73227 1.21885 0.94701 1.00746 0.97969 0.86432 1.22607 0.92084 0.99119 0.98768 1.21207 1.05609 0.98069 0.95637 1.22708 1.02458 1.02567 0.89394 1.22515 1.02919 0.89519 1.00126 0.92649 0.90023 0.94840 0.93010 0.89764 0.89387 0.92917 0.92223 0.91255 0.75094 0.87886 0.87826 0.88934 0.88696 0.88869 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 13.97 55.49 0.78 -24.71 16 2 C 0.03 0.81 5.29 -17.43 -0.09 0.72 16 3 Si 0.88 20.77 24.28 -169.99 -4.13 16.64 16 4 H -0.29 -6.65 6.54 56.52 0.37 -6.28 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.30 6.64 56.52 0.38 -5.92 16 7 C -0.27 -6.65 7.54 -15.06 -0.11 -6.77 16 8 H 0.10 2.65 5.98 -52.49 -0.31 2.34 16 9 N -0.61 -13.15 2.78 -164.30 -0.46 -13.61 16 10 C 0.09 1.86 4.38 -3.53 -0.02 1.84 16 11 C 0.05 0.81 6.98 37.31 0.26 1.07 16 12 O -0.39 -6.93 10.74 -35.23 -0.38 -7.30 16 13 C 0.05 0.89 6.29 37.31 0.23 1.13 16 14 C 0.13 2.35 3.21 -67.42 -0.22 2.13 16 15 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.14 2.51 4.44 -4.04 -0.02 2.50 16 17 N -0.69 -13.15 3.77 -60.29 -0.23 -13.38 16 18 C 0.54 10.50 7.61 -10.99 -0.08 10.42 16 19 O -0.56 -12.22 16.24 5.55 0.09 -12.13 16 20 C -0.13 -2.20 6.19 -91.77 -0.57 -2.77 16 21 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 22 C -0.09 -1.44 10.24 -26.70 -0.27 -1.71 16 23 C -0.20 -3.11 5.06 -154.48 -0.78 -3.89 16 24 C -0.13 -1.60 10.53 -26.74 -0.28 -1.89 16 25 C -0.11 -1.57 10.16 -26.73 -0.27 -1.84 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.08 1.80 4.89 -51.93 -0.25 1.55 16 28 H 0.03 0.70 6.81 -51.92 -0.35 0.34 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.42 7.56 -51.93 -0.39 1.03 16 35 H 0.41 7.99 7.33 -40.82 -0.30 7.69 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.10 1.87 8.14 -51.93 -0.42 1.44 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -29.90 326.70 -7.92 -37.83 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.30 Total: 10.81 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.22 Total: 0.93 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.09 Total: -51.70 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.29 Total: -19.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.13 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.90 -7.92 -37.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051135857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.174 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds