Wall clock time and date at job start Tue Mar 31 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47117 * 354.95756 * 3 2 1 5 5 H 1.48499 * 109.47068 * 114.95411 * 3 2 1 6 6 H 1.48495 * 109.47137 * 234.95337 * 3 2 1 7 7 C 1.38819 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 354.43764 * 7 2 1 9 9 N 1.36936 * 120.00090 * 174.43513 * 7 2 1 10 10 C 1.47172 * 135.99611 * 7.18141 * 9 7 2 11 11 C 1.53211 * 87.73378 * 153.40914 * 10 9 7 12 12 C 1.47170 * 135.99673 * 187.55437 * 9 7 2 13 13 C 1.52774 * 113.88557 * 139.44497 * 11 10 9 14 14 N 1.47355 * 108.05030 * 181.34280 * 13 11 10 15 15 C 1.34781 * 121.06166 * 131.72749 * 14 13 11 16 16 O 1.21283 * 119.99824 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00187 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47364 * 179.97438 * 17 15 14 19 19 C 1.52994 * 117.49852 * 243.74680 * 18 17 15 20 20 C 1.52999 * 117.50052 * 175.08490 * 18 17 15 21 21 C 1.47127 * 117.87962 * 311.75068 * 14 13 11 22 22 C 1.53224 * 108.72692 * 52.29528 * 21 14 13 23 23 O 1.42358 * 114.54941 * 271.98515 * 11 10 9 24 24 H 0.96993 * 120.00150 * 174.90295 * 1 2 3 25 25 H 1.09001 * 113.49188 * 268.09530 * 10 9 7 26 26 H 1.08998 * 113.49232 * 38.61348 * 10 9 7 27 27 H 1.09000 * 113.48721 * 321.39031 * 12 9 7 28 28 H 1.09002 * 113.49092 * 91.83690 * 12 9 7 29 29 H 1.09002 * 109.74972 * 300.98534 * 13 11 10 30 30 H 1.09010 * 109.74738 * 61.70623 * 13 11 10 31 31 H 1.09003 * 109.47254 * 299.99833 * 17 15 14 32 32 H 1.09001 * 109.47427 * 60.00040 * 17 15 14 33 33 H 1.08997 * 115.54835 * 29.41550 * 18 17 15 34 34 H 1.09002 * 117.50027 * 359.97438 * 19 18 17 35 35 H 1.08997 * 117.49875 * 145.02110 * 19 18 17 36 36 H 1.08998 * 117.50045 * 214.97814 * 20 18 17 37 37 H 1.09005 * 117.49487 * 0.02562 * 20 18 17 38 38 H 1.08999 * 109.59596 * 292.52284 * 21 14 13 39 39 H 1.09000 * 109.59484 * 172.06504 * 21 14 13 40 40 H 1.08994 * 109.49085 * 185.84432 * 22 21 14 41 41 H 1.08998 * 109.49379 * 65.76228 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2901 2.7437 -0.1231 5 1 3.0094 1.7509 1.2694 6 1 3.1940 1.6443 -1.1462 7 6 2.0102 -1.2022 0.0005 8 1 1.4739 -2.1352 0.0916 9 7 3.3748 -1.2051 -0.1145 10 6 4.4383 -0.1880 -0.1258 11 6 5.3911 -1.2660 0.4010 12 6 4.4203 -2.2263 -0.2875 13 6 6.7806 -1.2269 -0.2329 14 7 7.5741 -2.3294 0.3381 15 6 8.2765 -3.1635 -0.4540 16 8 8.2622 -3.0127 -1.6574 17 6 9.0795 -4.2836 0.1554 18 6 9.7750 -5.0749 -0.9541 19 6 9.3731 -6.5400 -1.1353 20 6 10.7353 -6.1887 -0.5321 21 6 7.5749 -2.4909 1.8004 22 6 6.1241 -2.5403 2.2907 23 8 5.4246 -1.3839 1.8192 24 1 -0.4850 -0.8367 -0.0746 25 1 4.6916 0.1647 -1.1256 26 1 4.2685 0.6261 0.5789 27 1 4.2352 -3.1382 0.2802 28 1 4.6680 -2.4221 -1.3308 29 1 6.6967 -1.3540 -1.3123 30 1 7.2604 -0.2738 -0.0100 31 1 9.8283 -3.8685 0.8302 32 1 8.4159 -4.9454 0.7119 33 1 10.0255 -4.5072 -1.8503 34 1 8.6135 -6.9402 -0.4638 35 1 9.3595 -6.9362 -2.1506 36 1 11.6174 -6.3540 -1.1507 37 1 10.8713 -6.3579 0.5361 38 1 8.0880 -1.6468 2.2612 39 1 8.0820 -3.4187 2.0655 40 1 6.1088 -2.5553 3.3804 41 1 5.6409 -3.4389 1.9073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053122507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:05 Heat of formation + Delta-G solvation = 23.474999 kcal Electronic energy + Delta-G solvation = -22743.142181 eV Core-core repulsion = 19433.804403 eV Total energy + Delta-G solvation = -3309.337779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71198 -39.24633 -37.29375 -36.60381 -34.65274 -32.48994 -30.81161 -29.72327 -27.92247 -25.87815 -25.60334 -23.46535 -22.64123 -21.82375 -20.83264 -19.47300 -18.97722 -17.50273 -17.40695 -16.58695 -16.19105 -15.88513 -15.16855 -15.10637 -14.75533 -14.36503 -14.14465 -13.81129 -13.72068 -13.24240 -13.14775 -13.03379 -12.52887 -12.32992 -11.78586 -11.75475 -11.55821 -11.38435 -11.12782 -10.79914 -10.62519 -10.50024 -10.43351 -10.28986 -9.90902 -9.75185 -9.16017 -9.08560 -8.89258 -8.47856 -7.15635 -6.26764 -3.20512 2.53941 2.76937 3.43252 3.48134 3.53869 3.65836 3.79887 4.25229 4.40914 4.59395 4.63101 4.64117 4.76497 4.80428 4.81805 4.85911 5.08177 5.11915 5.16016 5.22380 5.34730 5.37358 5.48461 5.54665 5.59973 5.64242 5.70489 5.84358 5.85482 6.02918 6.07332 6.14806 6.19270 6.25205 6.36960 6.49645 7.08607 7.27155 7.51048 8.07539 8.25438 8.99489 9.51459 10.36013 11.23313 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.004202 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.237766 B = 6661.799629 C = 6789.010141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.024 4.024 3 Si 1.068 2.932 4 H -0.294 1.294 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.300 4.300 8 H 0.082 0.918 9 N -0.618 5.618 10 C 0.114 3.886 11 C 0.058 3.942 12 C 0.106 3.894 13 C 0.101 3.899 14 N -0.614 5.614 15 C 0.518 3.482 16 O -0.537 6.537 17 C -0.109 4.109 18 C -0.140 4.140 19 C -0.178 4.178 20 C -0.181 4.181 21 C 0.073 3.927 22 C 0.045 3.955 23 O -0.335 6.335 24 H 0.260 0.740 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.645 -9.215 3.848 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.223 4.223 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.426 4.426 8 H 0.100 0.900 9 N -0.346 5.346 10 C -0.012 4.012 11 C 0.016 3.984 12 C -0.021 4.021 13 C -0.022 4.022 14 N -0.349 5.349 15 C 0.307 3.693 16 O -0.413 6.413 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.215 4.215 20 C -0.218 4.218 21 C -0.051 4.051 22 C -0.033 4.033 23 O -0.253 6.253 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.053 -7.369 3.415 23.501 hybrid contribution 0.254 -2.006 -0.109 2.025 sum 22.307 -9.375 3.306 24.421 Atomic orbital electron populations 1.70915 1.05390 1.29135 1.52245 1.25721 0.96443 1.00969 0.99120 0.83764 0.73935 0.76012 0.76312 1.22135 1.21732 1.21365 1.20124 0.77746 0.95879 1.48875 0.89984 1.45822 1.01420 1.01662 1.85695 1.22760 0.86460 0.93661 0.98307 1.23142 0.91910 1.01260 0.82095 1.22811 0.87940 0.93924 0.97406 1.22149 0.90436 0.89215 1.00399 1.48223 1.48539 1.31218 1.06882 1.20553 0.79387 0.82479 0.86919 1.90690 1.63540 1.72573 1.14524 1.21243 0.99180 0.96064 0.98362 1.22061 1.02578 0.90666 1.00572 1.23046 0.98124 0.97895 1.02407 1.23008 0.93952 1.03495 1.01358 1.22461 0.99034 1.03171 0.80390 1.22922 0.90192 0.90222 0.99943 1.87986 1.75036 1.43229 1.19022 0.92980 0.91995 0.91627 0.93653 0.93581 0.87733 0.90660 0.88532 0.88800 0.86388 0.88804 0.88708 0.88711 0.88808 0.90273 0.89015 0.87709 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.11 13.70 55.49 0.76 -29.35 16 2 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 3 Si 1.07 27.29 25.16 -169.99 -4.28 23.01 16 4 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 5 H -0.29 -7.07 6.50 56.52 0.37 -6.70 16 6 H -0.29 -6.74 6.19 56.52 0.35 -6.39 16 7 C -0.30 -8.95 11.08 -15.06 -0.17 -9.11 16 8 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.62 -15.85 3.69 -184.54 -0.68 -16.53 16 10 C 0.11 2.49 5.12 -8.04 -0.04 2.45 16 11 C 0.06 1.06 1.29 -90.67 -0.12 0.94 16 12 C 0.11 2.22 7.90 -8.19 -0.06 2.16 16 13 C 0.10 1.52 5.83 -3.69 -0.02 1.50 16 14 N -0.61 -7.80 3.03 -172.49 -0.52 -8.32 16 15 C 0.52 6.72 7.71 -10.99 -0.08 6.63 16 16 O -0.54 -8.99 15.06 5.56 0.08 -8.90 16 17 C -0.11 -0.96 4.35 -27.89 -0.12 -1.08 16 18 C -0.14 -1.32 5.41 -90.62 -0.49 -1.81 16 19 C -0.18 -1.50 10.18 -26.70 -0.27 -1.78 16 20 C -0.18 -1.31 10.25 -26.69 -0.27 -1.58 16 21 C 0.07 0.70 6.50 -3.58 -0.02 0.68 16 22 C 0.05 0.56 6.90 37.27 0.26 0.81 16 23 O -0.34 -6.01 10.55 -35.23 -0.37 -6.38 16 24 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 25 H 0.06 1.27 7.58 -51.93 -0.39 0.88 16 26 H 0.07 1.49 4.76 -51.93 -0.25 1.25 16 27 H 0.05 0.94 7.36 -51.93 -0.38 0.56 16 28 H 0.05 0.95 7.93 -51.93 -0.41 0.54 16 29 H 0.10 1.68 6.90 -51.93 -0.36 1.32 16 30 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.10 0.64 7.99 -51.93 -0.41 0.22 16 32 H 0.09 0.70 7.42 -51.93 -0.39 0.31 16 33 H 0.12 1.34 7.31 -51.93 -0.38 0.96 16 34 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.58 6.03 -51.93 -0.31 0.27 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.72 7.30 -51.93 -0.38 0.34 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -35.77 323.27 -7.93 -43.70 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.28 Total: -1.07 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.51 Total: -1.02 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.44 Total: -54.21 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.29 Total: -15.29 kcal Atomic # 14 Polarization: 27.29 SS G_CDS: -4.28 Total: 23.01 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.77 -7.93 -43.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053122507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.172 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds