Wall clock time and date at job start Tue Mar 31 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47117 * 354.95756 * 3 2 1 5 5 H 1.48499 * 109.47068 * 114.95411 * 3 2 1 6 6 H 1.48495 * 109.47137 * 234.95337 * 3 2 1 7 7 C 1.38819 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 354.43764 * 7 2 1 9 9 N 1.36936 * 120.00090 * 174.43513 * 7 2 1 10 10 C 1.47172 * 135.99611 * 7.18141 * 9 7 2 11 11 C 1.53211 * 87.73378 * 153.40914 * 10 9 7 12 12 C 1.47170 * 135.99673 * 187.55437 * 9 7 2 13 13 C 1.52774 * 113.88557 * 139.44497 * 11 10 9 14 14 N 1.47355 * 108.05030 * 181.34280 * 13 11 10 15 15 C 1.34781 * 121.06166 * 131.72749 * 14 13 11 16 16 O 1.21283 * 119.99824 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00187 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.47364 * 179.97438 * 17 15 14 19 19 C 1.52994 * 117.49852 * 243.74680 * 18 17 15 20 20 C 1.52999 * 117.50052 * 175.08490 * 18 17 15 21 21 C 1.47127 * 117.87962 * 311.75068 * 14 13 11 22 22 C 1.53224 * 108.72692 * 52.29528 * 21 14 13 23 23 O 1.42358 * 114.54941 * 271.98515 * 11 10 9 24 24 H 0.96993 * 120.00150 * 174.90295 * 1 2 3 25 25 H 1.09001 * 113.49188 * 268.09530 * 10 9 7 26 26 H 1.08998 * 113.49232 * 38.61348 * 10 9 7 27 27 H 1.09000 * 113.48721 * 321.39031 * 12 9 7 28 28 H 1.09002 * 113.49092 * 91.83690 * 12 9 7 29 29 H 1.09002 * 109.74972 * 300.98534 * 13 11 10 30 30 H 1.09010 * 109.74738 * 61.70623 * 13 11 10 31 31 H 1.09003 * 109.47254 * 299.99833 * 17 15 14 32 32 H 1.09001 * 109.47427 * 60.00040 * 17 15 14 33 33 H 1.08997 * 115.54835 * 29.41550 * 18 17 15 34 34 H 1.09002 * 117.50027 * 359.97438 * 19 18 17 35 35 H 1.08997 * 117.49875 * 145.02110 * 19 18 17 36 36 H 1.08998 * 117.50045 * 214.97814 * 20 18 17 37 37 H 1.09005 * 117.49487 * 0.02562 * 20 18 17 38 38 H 1.08999 * 109.59596 * 292.52284 * 21 14 13 39 39 H 1.09000 * 109.59484 * 172.06504 * 21 14 13 40 40 H 1.08994 * 109.49085 * 185.84432 * 22 21 14 41 41 H 1.08998 * 109.49379 * 65.76228 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2901 2.7437 -0.1231 5 1 3.0094 1.7509 1.2694 6 1 3.1940 1.6443 -1.1462 7 6 2.0102 -1.2022 0.0005 8 1 1.4739 -2.1352 0.0916 9 7 3.3748 -1.2051 -0.1145 10 6 4.4383 -0.1880 -0.1258 11 6 5.3911 -1.2660 0.4010 12 6 4.4203 -2.2263 -0.2875 13 6 6.7806 -1.2269 -0.2329 14 7 7.5741 -2.3294 0.3381 15 6 8.2765 -3.1635 -0.4540 16 8 8.2622 -3.0127 -1.6574 17 6 9.0795 -4.2836 0.1554 18 6 9.7750 -5.0749 -0.9541 19 6 9.3731 -6.5400 -1.1353 20 6 10.7353 -6.1887 -0.5321 21 6 7.5749 -2.4909 1.8004 22 6 6.1241 -2.5403 2.2907 23 8 5.4246 -1.3839 1.8192 24 1 -0.4850 -0.8367 -0.0746 25 1 4.6916 0.1647 -1.1256 26 1 4.2685 0.6261 0.5789 27 1 4.2352 -3.1382 0.2802 28 1 4.6680 -2.4221 -1.3308 29 1 6.6967 -1.3540 -1.3123 30 1 7.2604 -0.2738 -0.0100 31 1 9.8283 -3.8685 0.8302 32 1 8.4159 -4.9454 0.7119 33 1 10.0255 -4.5072 -1.8503 34 1 8.6135 -6.9402 -0.4638 35 1 9.3595 -6.9362 -2.1506 36 1 11.6174 -6.3540 -1.1507 37 1 10.8713 -6.3579 0.5361 38 1 8.0880 -1.6468 2.2612 39 1 8.0820 -3.4187 2.0655 40 1 6.1088 -2.5553 3.3804 41 1 5.6409 -3.4389 1.9073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053122507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:05 Heat of formation + Delta-G solvation = -2.930579 kcal Electronic energy + Delta-G solvation = -22744.287213 eV Core-core repulsion = 19433.804403 eV Total energy + Delta-G solvation = -3310.482811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94512 -40.44539 -38.20744 -37.80084 -35.80025 -34.65426 -32.10717 -30.61864 -29.41974 -27.42454 -27.20703 -24.55783 -23.42291 -23.19112 -21.89693 -20.82611 -19.99848 -19.63117 -18.36118 -17.92072 -17.26824 -17.18015 -16.31878 -16.27577 -15.97086 -15.59699 -15.41183 -15.20824 -15.05229 -14.86193 -14.41742 -14.25921 -13.53568 -13.35896 -13.31027 -12.87737 -12.74507 -12.40091 -12.34814 -12.24481 -12.19846 -11.86142 -11.44994 -11.31613 -11.26061 -11.08707 -10.95858 -10.78284 -10.65962 -9.60676 -9.28614 -8.66216 -5.52697 1.37355 1.48094 1.59280 1.66889 1.82962 2.51154 2.52583 2.86065 2.92245 3.13662 3.33723 3.48945 3.70354 3.76453 3.93230 4.04411 4.10495 4.19249 4.22889 4.31902 4.44620 4.45820 4.49377 4.56476 4.58594 4.62922 4.65251 4.74380 4.82284 4.82567 4.88076 4.94173 5.06677 5.09377 5.27994 5.30552 5.37977 5.88472 6.23078 6.35233 6.63567 7.12106 7.25716 8.18684 8.85099 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032279 B = 0.004202 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.237766 B = 6661.799629 C = 6789.010141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.082 4.082 3 Si 1.107 2.893 4 H -0.300 1.300 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.293 4.293 8 H 0.047 0.953 9 N -0.651 5.651 10 C 0.102 3.898 11 C 0.089 3.911 12 C 0.103 3.897 13 C 0.109 3.891 14 N -0.616 5.616 15 C 0.513 3.487 16 O -0.584 6.584 17 C -0.099 4.099 18 C -0.160 4.160 19 C -0.190 4.190 20 C -0.158 4.158 21 C 0.077 3.923 22 C 0.035 3.965 23 O -0.364 6.364 24 H 0.246 0.754 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.478 -9.439 5.550 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.274 4.274 3 Si 0.932 3.068 4 H -0.228 1.228 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.420 4.420 8 H 0.065 0.935 9 N -0.379 5.379 10 C -0.022 4.022 11 C 0.047 3.953 12 C -0.023 4.023 13 C -0.016 4.016 14 N -0.349 5.349 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.138 4.138 18 C -0.178 4.178 19 C -0.227 4.227 20 C -0.195 4.195 21 C -0.045 4.045 22 C -0.042 4.042 23 O -0.283 6.283 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 25.950 -7.643 5.142 27.537 hybrid contribution -0.927 -2.110 -0.616 2.385 sum 25.023 -9.753 4.526 27.235 Atomic orbital electron populations 1.71020 1.06690 1.28341 1.55263 1.27139 0.96478 1.04653 0.99110 0.83322 0.73494 0.71730 0.78299 1.22828 1.19778 1.18011 1.19980 0.80297 0.94547 1.47208 0.93525 1.45904 1.00823 1.05001 1.86203 1.23006 0.86077 0.93848 0.99305 1.22627 0.92685 0.97346 0.82691 1.22986 0.87606 0.93750 0.97937 1.21884 0.88981 0.91325 0.99366 1.48339 1.47833 1.30423 1.08343 1.21361 0.79083 0.82821 0.86412 1.90677 1.65144 1.73749 1.16767 1.21303 0.99552 0.94626 0.98318 1.22000 1.04518 0.90988 1.00332 1.23133 0.99670 0.97393 1.02524 1.23099 0.93188 1.00574 1.02618 1.22682 0.97372 1.06287 0.78134 1.23311 0.91432 0.87808 1.01640 1.87933 1.76514 1.45633 1.18211 0.94535 0.90365 0.92155 0.94100 0.93234 0.89144 0.88530 0.85282 0.86657 0.89209 0.88015 0.89545 0.88281 0.86583 0.88274 0.84833 0.84778 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.65 13.70 21.65 0.30 -64.35 16 2 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 3 Si 1.11 55.01 25.16 68.60 1.73 56.73 16 4 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 5 H -0.27 -12.56 6.50 99.48 0.65 -11.91 16 6 H -0.26 -11.24 6.19 99.48 0.62 -10.62 16 7 C -0.29 -18.04 11.08 84.04 0.93 -17.11 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 N -0.65 -33.55 3.69 -738.66 -2.73 -36.28 16 10 C 0.10 4.32 5.12 83.42 0.43 4.75 16 11 C 0.09 3.08 1.29 -10.82 -0.01 3.07 16 12 C 0.10 4.30 7.90 83.33 0.66 4.96 16 13 C 0.11 2.99 5.83 86.14 0.50 3.50 16 14 N -0.62 -13.56 3.03 -818.02 -2.48 -16.04 16 15 C 0.51 11.96 7.71 87.65 0.68 12.64 16 16 O -0.58 -19.13 15.06 -3.04 -0.05 -19.18 16 17 C -0.10 -1.34 4.35 29.85 0.13 -1.21 16 18 C -0.16 -2.66 5.41 -10.79 -0.06 -2.72 16 19 C -0.19 -2.85 10.18 30.62 0.31 -2.54 16 20 C -0.16 -1.76 10.25 30.62 0.31 -1.45 16 21 C 0.08 1.10 6.50 86.33 0.56 1.66 16 22 C 0.03 0.73 6.90 72.06 0.50 1.23 16 23 O -0.36 -12.21 10.55 -148.98 -1.57 -13.78 16 24 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 25 H 0.08 3.04 7.58 -2.39 -0.02 3.02 16 26 H 0.06 2.62 4.76 -2.39 -0.01 2.61 16 27 H 0.04 1.71 7.36 -2.39 -0.02 1.69 16 28 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 29 H 0.09 2.79 6.90 -2.39 -0.02 2.77 16 30 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.13 0.95 7.99 -2.39 -0.02 0.93 16 32 H 0.12 1.12 7.42 -2.39 -0.02 1.10 16 33 H 0.09 2.02 7.31 -2.39 -0.02 2.00 16 34 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.13 0.82 6.03 -2.39 -0.01 0.81 16 40 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.06 7.30 -2.39 -0.02 1.04 16 Total: -1.00 -82.52 323.27 1.44 -81.09 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.83 Total: 9.69 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 5.40 Total: 2.12 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -4.91 Total: -116.68 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.62 Total: -32.96 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.73 Total: 56.73 kcal Total: -82.52 1.44 -81.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053122507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.157 kcal (2) G-P(sol) polarization free energy of solvation -82.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds